; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184256_2025-05-16.184256_DOHBqC/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices.tf -from tf -to tab -return counts -return sites -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184256_2025-05-16.184256_DOHBqC/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184256_2025-05-16.184256_DOHBqC/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices_links.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184256_2025-05-16.184256_DOHBqC/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices.tf
; Input format        	tf
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184256_2025-05-16.184256_DOHBqC/results/oligos_7nt_mkv1/peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices_links.txt
; Output format       	tab
; pseudo-weight       	1
a	2	2	33	54	0	0	0	53	2	0	1	55	53	0	3	4	50
c	34	49	22	1	0	51	53	1	3	52	52	0	0	2	47	48	1
g	18	2	0	0	52	4	1	1	50	2	2	0	2	52	3	1	3
t	1	2	0	0	3	0	1	0	0	1	0	0	0	1	2	2	1
//
; Sites	55
>site_0
TCAAGCCAGCCAAGCCA
>site_1
CCAAGCCAGCCAATCCA
>site_2
CCAATCCAGCCAAGGAA
>site_3
GCCAGCGAGCCAAGCCA
>site_4
CCAAGCCAGCCAAGACA
>site_5
CCCAGCCAGCCAAGCCA
>site_6
CCAAGCCAGCCAAGCCA
>site_7
AAAAGCCAACCAAGCAA
>site_8
CCCCGCCAGCGAAGCCA
>site_9
CGAAGCCAGCCAAGCCA
>site_10
CCAAGCCAGCCAAGCCA
>site_11
CCAAGCCAGCCAAGCCA
>site_12
GCCAGCCAGCCAAGCCA
>site_13
CCAAGCCAGCCAAGCCA
>site_14
CAAAGCCAGCCAAGCCA
>site_15
CCAAGCCAGCCAGGCCA
>site_16
GCCAGCCAGCCAAGGCA
>site_17
CCAAGGCAGCCAAGCCA
>site_18
GCCAGCCGGCCAAGCCA
>site_19
CCAAGCCAGCCAAGCCA
>site_20
GCCAGCCAGCCAAGCCA
>site_21
CCAAGCCAGGCAAGCCA
>site_22
GCAAGCCAGCCAAGCCA
>site_23
GCCAGCCAGCCAAGCCA
>site_24
ACCAGCCAGCCAAGTGG
>site_25
CCAAGGCAGCCAAGTCA
>site_26
GCCAGCCACCCAAGCTA
>site_27
CCAAGCTAGGCAAGACA
>site_28
CCCAGCCAGCCAAGCCA
>site_29
CCAAGCCAGCCAAGCCA
>site_30
GCCAGCCAGCCAAGCCA
>site_31
CCAAGCCACCCAAGACA
>site_32
GCCAGCCAGCCAAGCCA
>site_33
CCAAGCCAGCCAAGCCA
>site_34
CCAAGCCAGCCAAGCCA
>site_35
CCCAGCCAGCCAACGAG
>site_36
CTAAGCCAGCCAGCCAA
>site_37
GCCAGCCAGCCAAGCCA
>site_38
GCCAGCCAGCCAAGCCC
>site_39
CCAAGCCCGCCAAGCCA
>site_40
CCCAGCCAGCCAAGCCA
>site_41
GCCAGCCAGCGAAGCCA
>site_42
CGAAGCCAGTCAAGCCA
>site_43
CCAATCCAGCCAAGCCA
>site_44
GCAAGCCACCCAAGCCA
>site_45
CCAAGCCAGCCAAGCCA
>site_46
CTAAGCCAGCCAAGCCA
>site_47
GCCATCCAGCCAAGCCT
>site_48
GCAAGGCAGCCAAGCCA
>site_49
GCCAGCCAGCCAAGCCA
>site_50
CCAAGCCAGCCAAGCCA
>site_51
CCAAGGCAGCCAAGCTG
>site_52
CCAAGCCAGCAAAGCCA
>site_53
CCCAGCCAACCAAGCCA
>site_54
GCCAGCCAGCCAAGCCA
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184256_2025-05-16.184256_DOHBqC/results/oligos_7nt_mkv1//peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184256_2025-05-16.184256_DOHBqC/results/oligos_7nt_mkv1//peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices_logo_m1_rc.png
;
a	2	2	0	7	0	7	0	7	0	3	2
c	0	1	7	0	0	0	0	0	0	1	2
g	3	3	0	0	7	0	7	0	6	2	2
t	2	1	0	0	0	0	0	0	1	1	1
//
; Sites	7
>site_0
TGCAGAGAGAA
>site_1
AACAGAGAGGC
>site_2
GGCAGAGAGGG
>site_3
GCCAGAGAGCC
>site_4
GTCAGAGAGAA
>site_5
TGCAGAGATTT
>site_6
AACAGAGAGAG
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184256_2025-05-16.184256_DOHBqC/results/oligos_7nt_mkv1//peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184256_2025-05-16.184256_DOHBqC/results/oligos_7nt_mkv1//peak-motifs_oligos-2str-noov_7nt_mkv1_pssm_count_matrices_logo_m2_rc.png
;
; Host name	rsat
; Job started	2025-05-16.184311
; Job done	2025-05-16.184312
; Seconds	0.12
;	user	0.12
;	system	0.03
;	cuser	0.53
;	csystem	0.08
