/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184320_2025-05-16.184320_WEQUPM/results/discovered_motifs/oligos_6nt_mkv1_m1/peak-motifs_oligos_6nt_mkv1_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184320_2025-05-16.184320_WEQUPM/results/discovered_motifs/oligos_6nt_mkv1_m1/peak-motifs_oligos_6nt_mkv1_m1.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184320_2025-05-16.184320_WEQUPM/results/discovered_motifs/oligos_6nt_mkv1_m1/peak-motifs_oligos_6nt_mkv1_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184320_2025-05-16.184320_WEQUPM/results/discovered_motifs/oligos_6nt_mkv1_m1/peak-motifs_oligos_6nt_mkv1_m1.tf
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
 Output files
	match_table_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184320_2025-05-16.184320_WEQUPM/results/discovered_motifs/oligos_6nt_mkv1_m1/peak-motifs_oligos_6nt_mkv1_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html
	prefix       	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184320_2025-05-16.184320_WEQUPM/results/discovered_motifs/oligos_6nt_mkv1_m1/peak-motifs_oligos_6nt_mkv1_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184320_2025-05-16.184320_WEQUPM/results/discovered_motifs/oligos_6nt_mkv1_m1/peak-motifs_oligos_6nt_mkv1_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184320_2025-05-16.184320_WEQUPM/results/discovered_motifs/oligos_6nt_mkv1_m1/peak-motifs_oligos_6nt_mkv1_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab
	html_index   	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184320_2025-05-16.184320_WEQUPM/results/discovered_motifs/oligos_6nt_mkv1_m1/peak-motifs_oligos_6nt_mkv1_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184320_2025-05-16.184320_WEQUPM/results/discovered_motifs/oligos_6nt_mkv1_m1/peak-motifs_oligos_6nt_mkv1_m1_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184320_2025-05-16.184320_WEQUPM/results/discovered_motifs/oligos_6nt_mkv1_m1/peak-motifs_oligos_6nt_mkv1_m1.tf
		file1	1	14	47
	file2	879 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
		file2		1		6		20
		file2		2		14		43
		file2		3		10		25
		file2		4		15		10
		file2		5		10		17
		file2		6		10		18
		file2		7		17		25
		file2		8		15		33
		file2		9		14		16
		file2		10		6		16
		file2		11		15		1369
		...	869 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv1_m1 MA1961.2 oligos_6nt_mkv1_m1 PATZ1 0.918 0.722 14 11 11 14 0.7857 0.7857 1.0000 R 2
oligos_6nt_mkv1_m1 MA0599.1 oligos_6nt_mkv1_m1 KLF5 0.903 0.645 14 10 10 14 0.7143 0.7143 1.0000 D 2
oligos_6nt_mkv1_m1 MA0746.3 oligos_6nt_mkv1_m1 SP3 0.819 0.644 14 11 11 14 0.7857 0.7857 1.0000 D 2
oligos_6nt_mkv1_m1 MA0741.1 oligos_6nt_mkv1_m1 KLF16 0.792 0.623 14 11 11 14 0.7857 0.7857 1.0000 D 2
oligos_6nt_mkv1_m1 MA0742.2 oligos_6nt_mkv1_m1 KLF12 0.953 0.612 14 9 9 14 0.6429 0.6429 1.0000 R 3
oligos_6nt_mkv1_m1 MA0516.3 oligos_6nt_mkv1_m1 SP2 0.939 0.604 14 9 9 14 0.6429 0.6429 1.0000 R 3
oligos_6nt_mkv1_m1 MA0740.2 oligos_6nt_mkv1_m1 KLF14 0.936 0.602 14 9 9 14 0.6429 0.6429 1.0000 R 3
oligos_6nt_mkv1_m1 MA0685.2 oligos_6nt_mkv1_m1 SP4 0.934 0.601 14 9 9 14 0.6429 0.6429 1.0000 R 3
oligos_6nt_mkv1_m1 MA1511.2 oligos_6nt_mkv1_m1 KLF10 0.934 0.601 14 9 9 14 0.6429 0.6429 1.0000 R 3
oligos_6nt_mkv1_m1 MA1564.2 oligos_6nt_mkv1_m1 SP9 0.838 0.599 14 10 10 14 0.7143 0.7143 1.0000 D 3
oligos_6nt_mkv1_m1 MA0747.2 oligos_6nt_mkv1_m1 SP8 0.752 0.591 14 11 11 14 0.7857 0.7857 1.0000 D 3
oligos_6nt_mkv1_m1 MA1516.2 oligos_6nt_mkv1_m1 KLF3 0.824 0.589 14 10 10 14 0.7143 0.7143 1.0000 D 1
oligos_6nt_mkv1_m1 MA1653.2 oligos_6nt_mkv1_m1 ZNF148 0.821 0.587 14 10 10 14 0.7143 0.7143 1.0000 D 3
oligos_6nt_mkv1_m1 MA0079.5 oligos_6nt_mkv1_m1 SP1 0.906 0.582 14 9 9 14 0.6429 0.6429 1.0000 R 3
oligos_6nt_mkv1_m1 MA2328.1 oligos_6nt_mkv1_m1 ZBED4 0.811 0.579 14 10 10 14 0.7143 0.7143 1.0000 D 4
oligos_6nt_mkv1_m1 MA1630.3 oligos_6nt_mkv1_m1 ZNF281 0.792 0.566 14 10 10 14 0.7143 0.7143 1.0000 R 3
oligos_6nt_mkv1_m1 MA1513.2 oligos_6nt_mkv1_m1 KLF15 0.983 0.562 14 8 8 14 0.5714 0.5714 1.0000 D 3
oligos_6nt_mkv1_m1 MA1512.2 oligos_6nt_mkv1_m1 KLF11 0.770 0.550 14 10 10 14 0.7143 0.7143 1.0000 D 3
oligos_6nt_mkv1_m1 MA1959.2 oligos_6nt_mkv1_m1 KLF7 0.961 0.549 14 8 8 14 0.5714 0.5714 1.0000 R 3
oligos_6nt_mkv1_m1 MA0753.3 oligos_6nt_mkv1_m1 ZNF740 0.757 0.541 14 10 10 14 0.7143 0.7143 1.0000 D 3
oligos_6nt_mkv1_m1 MA0493.3 oligos_6nt_mkv1_m1 KLF1 0.944 0.539 14 8 8 14 0.5714 0.5714 1.0000 R 3
oligos_6nt_mkv1_m1 MA1515.2 oligos_6nt_mkv1_m1 KLF2 0.881 0.503 14 8 8 14 0.5714 0.5714 1.0000 D 3
oligos_6nt_mkv1_m1 MA1517.2 oligos_6nt_mkv1_m1 KLF6 0.780 0.501 14 9 9 14 0.6429 0.6429 1.0000 D 3
oligos_6nt_mkv1_m1 MA0039.5 oligos_6nt_mkv1_m1 KLF4 0.850 0.486 14 8 8 14 0.5714 0.5714 1.0000 D 3
oligos_6nt_mkv1_m1 MA1522.2 oligos_6nt_mkv1_m1 MAZ 0.802 0.458 14 8 8 14 0.5714 0.5714 1.0000 D 3
oligos_6nt_mkv1_m1 MA0471.3 oligos_6nt_mkv1_m1 E2F6 0.788 0.451 14 8 8 14 0.5714 0.5714 1.0000 R 2
oligos_6nt_mkv1_m1 MA0162.5 oligos_6nt_mkv1_m1 EGR1 0.745 0.447 14 10 9 15 0.6000 0.6429 0.9000 D 5
oligos_6nt_mkv1_m1 MA0733.2 oligos_6nt_mkv1_m1 EGR4 0.763 0.429 14 11 9 16 0.5625 0.6429 0.8182 D 5
oligos_6nt_mkv1_m1 MA1122.2 oligos_6nt_mkv1_m1 TFDP1 0.739 0.423 14 8 8 14 0.5714 0.5714 1.0000 R 2
oligos_6nt_mkv1_m1 MA0732.2 oligos_6nt_mkv1_m1 EGR3 0.745 0.419 14 11 9 16 0.5625 0.6429 0.8182 D 5
oligos_6nt_mkv1_m1 MA1615.2 oligos_6nt_mkv1_m1 Plagl1 0.705 0.403 14 8 8 14 0.5714 0.5714 1.0000 R 0 
 Host name	rsat
 Job started	2025-05-16.184346
 Job done	2025-05-16.184358
 Seconds	1.76
	user	1.76
	system	0.52
	cuser	9.33
;	csystem	0.86