/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184320_2025-05-16.184320_WEQUPM/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab 
 compare-matrices  -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184320_2025-05-16.184320_WEQUPM/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184320_2025-05-16.184320_WEQUPM/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184320_2025-05-16.184320_WEQUPM/results/discovered_motifs/peak-motifs_motifs_discovered.tf
	file1 	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184320_2025-05-16.184320_WEQUPM/results/discovered_motifs/peak-motifs_motifs_discovered.tf
 Output files
	html_index   	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184320_2025-05-16.184320_WEQUPM/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184320_2025-05-16.184320_WEQUPM/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184320_2025-05-16.184320_WEQUPM/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab
	match_table_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184320_2025-05-16.184320_WEQUPM/results/discovered_motifs/peak-motifs_motifs_disco_compa.html
	prefix       	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184320_2025-05-16.184320_WEQUPM/results/discovered_motifs/peak-motifs_motifs_disco_compa
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184320_2025-05-16.184320_WEQUPM/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html
 Matrices
	file1	10 matrices	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184320_2025-05-16.184320_WEQUPM/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file1	1	14	47
		file1	2	10	23
		file1	3	13	18
		file1	4	10	37
		file1	5	10	34
		file1	6	13	57
		file1	7	12	22
		file1	8	12	16
		file1	9	12	34
		file1	10	11	22
	file2	10 matrices	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184320_2025-05-16.184320_WEQUPM/results/discovered_motifs/peak-motifs_motifs_discovered.tf
		file2		1		14		47
		file2		2		10		23
		file2		3		13		18
		file2		4		10		37
		file2		5		10		34
		file2		6		13		57
		file2		7		12		22
		file2		8		12		16
		file2		9		12		34
		file2		10		11		22
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv1_m3 oligos_6nt_mkv1_m3 oligos_6nt_mkv1_m3 oligos_6nt_mkv1_m3 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv1_m4 oligos_6nt_mkv1_m4 oligos_6nt_mkv1_m4 oligos_6nt_mkv1_m4 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv1_m2 oligos_7nt_mkv1_m2 oligos_7nt_mkv1_m2 oligos_7nt_mkv1_m2 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv1_m4 oligos_7nt_mkv1_m4 oligos_7nt_mkv1_m4 oligos_7nt_mkv1_m4 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv1_m5 oligos_7nt_mkv1_m5 oligos_7nt_mkv1_m5 oligos_7nt_mkv1_m5 1.000 1.000 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv1_m3 oligos_7nt_mkv1_m3 oligos_7nt_mkv1_m3 oligos_7nt_mkv1_m3 1.000 1.000 12 12 12 12 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv1_m1 oligos_6nt_mkv1_m1 oligos_6nt_mkv1_m1 oligos_6nt_mkv1_m1 1.000 1.000 14 14 14 14 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv1_m1 oligos_7nt_mkv1_m1 oligos_7nt_mkv1_m1 oligos_7nt_mkv1_m1 1.000 1.000 13 13 13 13 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv1_m2 oligos_6nt_mkv1_m2 oligos_6nt_mkv1_m2 oligos_6nt_mkv1_m2 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv1_m5 oligos_6nt_mkv1_m5 oligos_6nt_mkv1_m5 oligos_6nt_mkv1_m5 1.000 1.000 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv1_m3 oligos_7nt_mkv1_m2 oligos_6nt_mkv1_m3 oligos_7nt_mkv1_m2 0.997 0.921 13 12 12 13 0.9231 0.9231 1.0000 D 0
oligos_7nt_mkv1_m2 oligos_6nt_mkv1_m3 oligos_7nt_mkv1_m2 oligos_6nt_mkv1_m3 0.997 0.921 12 13 12 13 0.9231 1.0000 0.9231 D 0
oligos_7nt_mkv1_m1 oligos_6nt_mkv1_m1 oligos_7nt_mkv1_m1 oligos_6nt_mkv1_m1 0.970 0.900 13 14 13 14 0.9286 1.0000 0.9286 D 0
oligos_6nt_mkv1_m1 oligos_7nt_mkv1_m1 oligos_6nt_mkv1_m1 oligos_7nt_mkv1_m1 0.970 0.900 14 13 13 14 0.9286 0.9286 1.0000 D 0
oligos_7nt_mkv1_m5 oligos_6nt_mkv1_m5 oligos_7nt_mkv1_m5 oligos_6nt_mkv1_m5 0.711 0.646 11 10 10 11 0.9091 0.9091 1.0000 D 0
oligos_6nt_mkv1_m5 oligos_7nt_mkv1_m5 oligos_6nt_mkv1_m5 oligos_7nt_mkv1_m5 0.711 0.646 10 11 10 11 0.9091 1.0000 0.9091 D 0
oligos_7nt_mkv1_m1 oligos_6nt_mkv1_m5 oligos_7nt_mkv1_m1 oligos_6nt_mkv1_m5 0.726 0.559 13 10 10 13 0.7692 0.7692 1.0000 D 2
oligos_6nt_mkv1_m5 oligos_7nt_mkv1_m1 oligos_6nt_mkv1_m5 oligos_7nt_mkv1_m1 0.726 0.559 10 13 10 13 0.7692 1.0000 0.7692 D -2
oligos_6nt_mkv1_m1 oligos_6nt_mkv1_m5 oligos_6nt_mkv1_m1 oligos_6nt_mkv1_m5 0.744 0.532 14 10 10 14 0.7143 0.7143 1.0000 D 2
oligos_6nt_mkv1_m5 oligos_6nt_mkv1_m1 oligos_6nt_mkv1_m5 oligos_6nt_mkv1_m1 0.744 0.532 10 14 10 14 0.7143 1.0000 0.7143 D -2
oligos_7nt_mkv1_m2 oligos_7nt_mkv1_m3 oligos_7nt_mkv1_m2 oligos_7nt_mkv1_m3 0.707 0.424 12 12 9 15 0.6000 0.7500 0.7500 D 3
oligos_7nt_mkv1_m3 oligos_7nt_mkv1_m2 oligos_7nt_mkv1_m3 oligos_7nt_mkv1_m2 0.707 0.424 12 12 9 15 0.6000 0.7500 0.7500 D -3 
 Host name	rsat
 Job started	2025-05-16.184341
 Job done	2025-05-16.184345
 Seconds	0.25
	user	0.25
	system	0.09
	cuser	3.94
;	csystem	0.61