One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184320_2025-05-16.184320_WEQUPM/results/discovered_motifs/peak-motifs_motifs_discovered.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184320_2025-05-16.184320_WEQUPM/results/discovered_vs_db/peak-motifs_motifs_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv1_m1_shift1 ; 32 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv1_m1_shift1 (oligos_7nt_mkv1_m1)
; oligos_7nt_mkv1_m1; m=0 (reference); ncol1=13; shift=1; ncol=14; -csGCCCCGCCCyv ; Alignment reference a 0 10 7 1 2 0 1 2 3 2 1 0 5 15 c 0 28 18 5 50 56 53 53 1 51 55 50 26 20 g 0 8 27 47 3 0 1 0 50 3 1 3 10 18 t 0 11 5 4 2 1 2 2 3 1 0 4 16 4

MA1961.2_rc_shift3 (PATZ1_rc)
; oligos_7nt_mkv1_m1 versus MA1961.2_rc (PATZ1_rc); m=1/31; ncol2=11; w=0; offset=2; strand=R; shift=3; score=0.77469; ---sCCCCkCCCCs ; cor=; Ncor= a 0 0 0 34.0 1.0 1.0 1.0 1.0 155.0 1.0 1.0 1.0 24.0 44.0 c 0 0 0 523.0 944.0 964.0 957.0 997.0 1.0 997.0 997.0 727.0 680.0 543.0 g 0 0 0 392.0 1.0 34.0 41.0 1.0 489.0 1.0 1.0 78.0 228.0 288.0 t 0 0 0 51.0 54.0 1.0 1.0 1.0 355.0 1.0 1.0 195.0 68.0 125.0

MA0599.1_shift3 (KLF5)
; oligos_7nt_mkv1_m1 versus MA0599.1 (KLF5); m=2/31; ncol2=10; w=0; offset=2; strand=D; shift=3; score=0.713773; ---gCCMCrCCCh- ; cor=; Ncor= a 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 c 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 g 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 t 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0

MA0746.3_shift3 (SP3)
; oligos_7nt_mkv1_m1 versus MA0746.3 (SP3); m=3/31; ncol2=11; w=0; offset=2; strand=D; shift=3; score=0.708476; ---rCCACGCCCmC ; cor=; Ncor= a 0 0 0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 c 0 0 0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 g 0 0 0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 t 0 0 0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0

MA0741.1_shift3 (KLF16)
; oligos_7nt_mkv1_m1 versus MA0741.1 (KLF16); m=4/31; ncol2=11; w=0; offset=2; strand=D; shift=3; score=0.692232; ---gmCMCgCCCMC ; cor=; Ncor= a 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 c 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 g 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 t 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0

MA0742.2_rc_shift4 (KLF12_rc)
; oligos_7nt_mkv1_m1 versus MA0742.2_rc (KLF12_rc); m=5/31; ncol2=9; w=0; offset=3; strand=R; shift=4; score=0.675347; ----CCCCGCCCC- ; cor=; Ncor= a 0 0 0 0 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 0 c 0 0 0 0 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 0 g 0 0 0 0 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 0 t 0 0 0 0 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948 0

MA0516.3_rc_shift4 (SP2_rc)
; oligos_7nt_mkv1_m1 versus MA0516.3_rc (SP2_rc); m=6/31; ncol2=9; w=0; offset=3; strand=R; shift=4; score=0.669652; ----cCCCGCCCC- ; cor=; Ncor= a 0 0 0 0 18.3284 0.733138 24.1935 0.733138 0.733138 0.733138 0.733138 0.733138 79.912 0 c 0 0 0 0 610.704 877.566 974.34 997.801 0.733138 997.801 997.801 830.645 766.129 0 g 0 0 0 0 164.956 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 0.733138 0 t 0 0 0 0 206.012 120.968 0.733138 0.733138 112.17 0.733138 0.733138 167.889 153.226 0

MA1511.2_rc_shift4 (KLF10_rc)
; oligos_7nt_mkv1_m1 versus MA1511.2_rc (KLF10_rc); m=7/31; ncol2=9; w=0; offset=3; strand=R; shift=4; score=0.665934; ----CCMCGCCCC- ; cor=; Ncor= a 0 0 0 0 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 0 c 0 0 0 0 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 0 g 0 0 0 0 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 0 t 0 0 0 0 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427 0

MA0685.2_rc_shift4 (SP4_rc)
; oligos_7nt_mkv1_m1 versus MA0685.2_rc (SP4_rc); m=8/31; ncol2=9; w=0; offset=3; strand=R; shift=4; score=0.663334; ----CyCCKCCCc- ; cor=; Ncor= a 0 0 0 0 0.686813 50.1374 77.6099 0.686813 0.686813 0.686813 0.686813 0.686813 195.742 0 c 0 0 0 0 997.94 660.027 921.016 997.94 0.686813 997.94 997.94 997.94 654.533 0 g 0 0 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 t 0 0 0 0 0.686813 289.148 0.686813 0.686813 275.412 0.686813 0.686813 0.686813 149.038 0

MA0740.2_rc_shift4 (KLF14_rc)
; oligos_7nt_mkv1_m1 versus MA0740.2_rc (KLF14_rc); m=9/31; ncol2=9; w=0; offset=3; strand=R; shift=4; score=0.662486; ----CCMCGCCCm- ; cor=; Ncor= a 0 0 0 0 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 0 c 0 0 0 0 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 0 g 0 0 0 0 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 0 t 0 0 0 0 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158 0

MA1564.2_shift4 (SP9)
; oligos_7nt_mkv1_m1 versus MA1564.2 (SP9); m=10/31; ncol2=10; w=0; offset=3; strand=D; shift=4; score=0.657019; ----cCmCGCCCmc ; cor=; Ncor= a 0 0 0 0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 c 0 0 0 0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 g 0 0 0 0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 t 0 0 0 0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0

MA1653.2_shift4 (ZNF148)
; oligos_7nt_mkv1_m1 versus MA1653.2 (ZNF148); m=11/31; ncol2=10; w=0; offset=3; strand=D; shift=4; score=0.650517; ----CCCCTCCCcc ; cor=; Ncor= a 0 0 0 0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 c 0 0 0 0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 g 0 0 0 0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 t 0 0 0 0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0

MA0079.5_rc_shift4 (SP1_rc)
; oligos_7nt_mkv1_m1 versus MA0079.5_rc (SP1_rc); m=12/31; ncol2=9; w=0; offset=3; strand=R; shift=4; score=0.647842; ----CyCCKCCCC- ; cor=; Ncor= a 0 0 0 0 1.05485 34.8101 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 47.4684 0 c 0 0 0 0 836.498 659.283 912.447 996.835 1.05485 996.835 996.835 996.835 950.422 0 g 0 0 0 0 1.05485 51.6878 85.443 1.05485 731.013 1.05485 1.05485 1.05485 1.05485 0 t 0 0 0 0 161.392 254.219 1.05485 1.05485 266.878 1.05485 1.05485 1.05485 1.05485 0

MA1630.3_rc_shift4 (ZNF281_rc)
; oligos_7nt_mkv1_m1 versus MA1630.3_rc (ZNF281_rc); m=13/31; ncol2=10; w=0; offset=3; strand=R; shift=4; score=0.636719; ----CCCCTCCCCC ; cor=; Ncor= a 0 0 0 0 7.0 18.0 1.0 105.0 96.0 1.0 1.0 1.0 1.0 1.0 c 0 0 0 0 920.0 940.0 998.0 772.0 1.0 998.0 998.0 963.0 998.0 998.0 g 0 0 0 0 27.0 1.0 1.0 1.0 183.0 1.0 1.0 1.0 1.0 1.0 t 0 0 0 0 47.0 41.0 1.0 122.0 720.0 1.0 1.0 35.0 1.0 1.0

MA1516.2_shift2 (KLF3)
; oligos_7nt_mkv1_m1 versus MA1516.2 (KLF3); m=14/31; ncol2=10; w=0; offset=1; strand=D; shift=2; score=0.631385; --grCCrCGCCC-- ; cor=; Ncor= a 0 0 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 0 0 c 0 0 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 0 0 g 0 0 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 0 0 t 0 0 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 0 0

MA1512.2_shift4 (KLF11)
; oligos_7nt_mkv1_m1 versus MA1512.2 (KLF11); m=15/31; ncol2=10; w=0; offset=3; strand=D; shift=4; score=0.604526; ----cCACGCCCmC ; cor=; Ncor= a 0 0 0 0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 c 0 0 0 0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 g 0 0 0 0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 t 0 0 0 0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0

MA1513.2_shift4 (KLF15)
; oligos_7nt_mkv1_m1 versus MA1513.2 (KLF15); m=16/31; ncol2=8; w=0; offset=3; strand=D; shift=4; score=0.603973; ----cCCCGCCC-- ; cor=; Ncor= a 0 0 0 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 0 c 0 0 0 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 0 g 0 0 0 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 0 t 0 0 0 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0 0

MA1959.2_rc_shift4 (KLF7_rc)
; oligos_7nt_mkv1_m1 versus MA1959.2_rc (KLF7_rc); m=17/31; ncol2=8; w=0; offset=3; strand=R; shift=4; score=0.59256; ----CcMCGCCC-- ; cor=; Ncor= a 0 0 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 0 c 0 0 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 0 g 0 0 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 0 t 0 0 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0 0

MA0753.3_shift4 (ZNF740)
; oligos_7nt_mkv1_m1 versus MA0753.3 (ZNF740); m=18/31; ncol2=10; w=0; offset=3; strand=D; shift=4; score=0.592226; ----CCCCCCCCAc ; cor=; Ncor= a 0 0 0 0 60.0 110.0 18.0 22.0 23.0 10.0 2.0 115.0 1055.0 207.0 c 0 0 0 0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 239.0 1055.0 g 0 0 0 0 37.0 14.0 4.0 7.0 3.0 7.0 3.0 6.0 68.0 54.0 t 0 0 0 0 49.0 1.0 16.0 15.0 11.0 6.0 3.0 4.0 134.0 246.0

MA2328.1_shift0 (ZBED4)
; oligos_7nt_mkv1_m1 versus MA2328.1 (ZBED4); m=19/31; ncol2=10; w=-1; offset=-1; strand=D; shift=0; score=0.586544; CcCGCyCCGC---- ; cor=; Ncor= a 41.0 26.0 29.0 17.0 6.0 11.0 14.0 12.0 22.0 19.0 0 0 0 0 c 479.0 419.0 549.0 14.0 621.0 391.0 598.0 604.0 19.0 589.0 0 0 0 0 g 80.0 65.0 62.0 608.0 26.0 28.0 34.0 23.0 580.0 35.0 0 0 0 0 t 60.0 150.0 20.0 21.0 7.0 230.0 14.0 21.0 39.0 17.0 0 0 0 0

MA0493.3_rc_shift4 (KLF1_rc)
; oligos_7nt_mkv1_m1 versus MA0493.3_rc (KLF1_rc); m=20/31; ncol2=8; w=0; offset=3; strand=R; shift=4; score=0.586312; ----CCmCrCCC-- ; cor=; Ncor= a 0 0 0 0 1.0 21.0 324.0 1.0 346.0 1.0 1.0 1.0 0 0 c 0 0 0 0 998.0 896.0 675.0 998.0 1.0 998.0 998.0 998.0 0 0 g 0 0 0 0 1.0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 0 0 t 0 0 0 0 1.0 82.0 1.0 1.0 125.0 1.0 1.0 1.0 0 0

MA0747.2_shift4 (SP8)
; oligos_7nt_mkv1_m1 versus MA0747.2 (SP8); m=21/31; ncol2=11; w=0; offset=3; strand=D; shift=4; score=0.568042; ----mCACgCCCmC ; cor=; Ncor= a 0 0 0 0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 13.0 c 0 0 0 0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 167.0 g 0 0 0 0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 21.0 t 0 0 0 0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0 39.0

MA1517.2_shift4 (KLF6)
; oligos_7nt_mkv1_m1 versus MA1517.2 (KLF6); m=22/31; ncol2=9; w=0; offset=3; strand=D; shift=4; score=0.552877; ----cCACRCCCm- ; cor=; Ncor= a 0 0 0 0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 0 c 0 0 0 0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 0 g 0 0 0 0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 0 t 0 0 0 0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0 0

MA1515.2_shift4 (KLF2)
; oligos_7nt_mkv1_m1 versus MA1515.2 (KLF2); m=23/31; ncol2=8; w=0; offset=3; strand=D; shift=4; score=0.548037; ----CCmCrCCC-- ; cor=; Ncor= a 0 0 0 0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 0 0 c 0 0 0 0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 0 0 g 0 0 0 0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 0 0 t 0 0 0 0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 0 0

MA0039.5_shift4 (KLF4)
; oligos_7nt_mkv1_m1 versus MA0039.5 (KLF4); m=24/31; ncol2=8; w=0; offset=3; strand=D; shift=4; score=0.533589; ----CCCCACCC-- ; cor=; Ncor= a 0 0 0 0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 0 0 c 0 0 0 0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 0 0 g 0 0 0 0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 0 0 t 0 0 0 0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 0 0

MA1522.2_shift4 (MAZ)
; oligos_7nt_mkv1_m1 versus MA1522.2 (MAZ); m=25/31; ncol2=8; w=0; offset=3; strand=D; shift=4; score=0.507034; ----CCCCTCCc-- ; cor=; Ncor= a 0 0 0 0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 0 0 c 0 0 0 0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 0 0 g 0 0 0 0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 0 0 t 0 0 0 0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 0 0

MA0657.2_shift2 (KLF13)
; oligos_7nt_mkv1_m1 versus MA0657.2 (KLF13); m=26/31; ncol2=17; w=0; offset=1; strand=D; shift=2; score=0.481261; --tRmCACGCCCCY ; cor=; Ncor= a 0 0 733.0 1891.0 496.0 75.0 2384.0 0.0 24.0 0.0 4.0 1.0 509.0 3.0 c 0 0 46.0 0.0 923.0 924.0 0.0 1353.0 2.0 1596.0 1469.0 1760.0 1766.0 638.0 g 0 0 796.0 4630.0 58.0 2.0 11.0 7.0 3028.0 0.0 0.0 0.0 0.0 3.0 t 0 0 1766.0 59.0 102.0 61.0 0.0 3.0 9.0 7.0 0.0 16.0 10.0 1403.0

MA1615.2_rc_shift1 (Plagl1_rc)
; oligos_7nt_mkv1_m1 versus MA1615.2_rc (Plagl1_rc); m=27/31; ncol2=8; w=0; offset=0; strand=R; shift=1; score=0.467223; -TGGCCCCa----- ; cor=; Ncor= a 0 371.0 398.0 321.0 142.0 183.0 323.0 118.0 9425.0 0 0 0 0 0 c 0 1032.0 422.0 313.0 13495.0 13517.0 12261.0 13595.0 1338.0 0 0 0 0 0 g 0 686.0 13152.0 12737.0 336.0 266.0 356.0 243.0 1471.0 0 0 0 0 0 t 0 12064.0 181.0 782.0 180.0 187.0 1213.0 197.0 1919.0 0 0 0 0 0

MA0471.3_rc_shift3 (E2F6_rc)
; oligos_7nt_mkv1_m1 versus MA0471.3_rc (E2F6_rc); m=28/31; ncol2=8; w=0; offset=2; strand=R; shift=3; score=0.446819; ---TTCCCGCC--- ; cor=; Ncor= a 0 0 0 757.0 268.0 296.0 353.0 813.0 2125.0 205.0 453.0 0 0 0 c 0 0 0 5021.0 2322.0 31614.0 31973.0 30573.0 693.0 31790.0 29387.0 0 0 0 g 0 0 0 1595.0 1171.0 834.0 434.0 539.0 26424.0 837.0 1148.0 0 0 0 t 0 0 0 25725.0 29337.0 354.0 338.0 1173.0 3856.0 266.0 2110.0 0 0 0

MA1548.2_shift1 (PLAGL2)
; oligos_7nt_mkv1_m1 versus MA1548.2 (PLAGL2); m=29/31; ncol2=8; w=0; offset=0; strand=D; shift=1; score=0.440867; -GGGCCCCC----- ; cor=; Ncor= a 0 39.0 0.0 0.0 0.0 0.0 0.0 0.0 90.0 0 0 0 0 0 c 0 39.0 0.0 151.0 799.0 999.0 999.0 925.0 684.0 0 0 0 0 0 g 0 813.0 999.0 848.0 200.0 0.0 0.0 0.0 25.0 0 0 0 0 0 t 0 107.0 0.0 0.0 0.0 0.0 0.0 74.0 198.0 0 0 0 0 0

MA0162.5_shift6 (EGR1)
; oligos_7nt_mkv1_m1 versus MA0162.5 (EGR1); m=30/31; ncol2=10; w=0; offset=5; strand=D; shift=6; score=0.41133; ------mCGCCCAC ; cor=; Ncor= a 0 0 0 0 0 0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 c 0 0 0 0 0 0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 g 0 0 0 0 0 0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 t 0 0 0 0 0 0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0

MA0732.2_shift6 (EGR3)
; oligos_7nt_mkv1_m1 versus MA0732.2 (EGR3); m=31/31; ncol2=11; w=0; offset=5; strand=D; shift=6; score=0.400628; ------mCGCCCMC ; cor=; Ncor= a 0 0 0 0 0 0 1031.0 2.0 66.0 0.0 0.0 0.0 1159.0 0.0 c 0 0 0 0 0 0 701.0 1855.0 32.0 1856.0 1858.0 1823.0 455.0 1875.0 g 0 0 0 0 0 0 10.0 0.0 2158.0 2.0 0.0 7.0 11.0 7.0 t 0 0 0 0 0 0 20.0 13.0 36.0 0.0 10.0 80.0 4.0 2.0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv1_m4_shift4 ; 9 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv1_m4_shift4 (oligos_6nt_mkv1_m4)
; oligos_6nt_mkv1_m4; m=0 (reference); ncol1=10; shift=4; ncol=14; ----csAGGCTGgs ; Alignment reference a 0 0 0 0 6 9 37 0 0 0 0 0 8 2 c 0 0 0 0 20 17 0 2 0 37 0 0 9 10 g 0 0 0 0 6 10 0 35 37 0 0 36 16 20 t 0 0 0 0 5 1 0 0 0 0 37 1 4 5

MA2341.1_rc_shift6 (FEZF2_rc)
; oligos_6nt_mkv1_m4 versus MA2341.1_rc (FEZF2_rc); m=1/8; ncol2=8; w=0; offset=2; strand=R; shift=6; score=0.766204; ------AGGCTGGG ; cor=; Ncor= a 0 0 0 0 0 0 233.0 9.0 5.0 0.0 5.0 3.0 45.0 36.0 c 0 0 0 0 0 0 8.0 2.0 28.0 251.0 14.0 0.0 9.0 10.0 g 0 0 0 0 0 0 10.0 247.0 224.0 8.0 15.0 258.0 206.0 202.0 t 0 0 0 0 0 0 14.0 7.0 8.0 6.0 231.0 4.0 5.0 17.0

MA2121.1_shift2 (ZNF213)
; oligos_6nt_mkv1_m4 versus MA2121.1 (ZNF213); m=2/8; ncol2=12; w=-2; offset=-2; strand=D; shift=2; score=0.709605; --gCCCAGGCwGsr ; cor=; Ncor= a 0 0 119.0 26.0 18.0 15.0 577.0 10.0 12.0 16.0 229.0 42.0 61.0 216.0 c 0 0 89.0 581.0 603.0 630.0 34.0 13.0 25.0 642.0 97.0 76.0 319.0 86.0 g 0 0 403.0 52.0 34.0 34.0 54.0 661.0 639.0 22.0 124.0 519.0 260.0 330.0 t 0 0 76.0 28.0 32.0 8.0 22.0 3.0 11.0 7.0 237.0 50.0 47.0 55.0

MA2099.1_rc_shift4 (ZNF770_rc)
; oligos_6nt_mkv1_m4 versus MA2099.1_rc (ZNF770_rc); m=3/8; ncol2=8; w=0; offset=0; strand=R; shift=4; score=0.59786; ----kGAGGCyG-- ; cor=; Ncor= a 0 0 0 0 724.0 56.0 13889.0 65.0 156.0 126.0 387.0 1052.0 0 0 c 0 0 0 0 485.0 86.0 215.0 133.0 681.0 13947.0 9119.0 374.0 0 0 g 0 0 0 0 3865.0 14154.0 140.0 14096.0 13393.0 79.0 857.0 12613.0 0 0 t 0 0 0 0 9257.0 35.0 87.0 37.0 101.0 179.0 3968.0 292.0 0 0

MA2125.1_rc_shift7 (Zfp809_rc)
; oligos_6nt_mkv1_m4 versus MA2125.1_rc (Zfp809_rc); m=4/8; ncol2=9; w=0; offset=3; strand=R; shift=7; score=0.514538; -------gGCTGGG ; cor=; Ncor= a 0 0 0 0 0 0 0 242.0 61.0 26.0 37.0 18.0 21.0 25.0 c 0 0 0 0 0 0 0 115.0 99.0 1572.0 73.0 16.0 14.0 18.0 g 0 0 0 0 0 0 0 1091.0 1218.0 35.0 26.0 1621.0 1610.0 1607.0 t 0 0 0 0 0 0 0 217.0 287.0 32.0 1529.0 10.0 20.0 15.0

MA1973.2_shift3 (ZKSCAN3)
; oligos_6nt_mkv1_m4 versus MA1973.2 (ZKSCAN3); m=5/8; ncol2=14; w=-1; offset=-1; strand=D; shift=3; score=0.514229; ---CCcAGGCTAGC ; cor=; Ncor= a 0 0 0 23.0 17.0 36.0 188.0 6.0 0.0 5.0 2.0 197.0 3.0 36.0 c 0 0 0 149.0 152.0 115.0 2.0 1.0 5.0 183.0 6.0 3.0 6.0 168.0 g 0 0 0 17.0 15.0 38.0 19.0 201.0 203.0 4.0 2.0 8.0 188.0 4.0 t 0 0 0 21.0 26.0 21.0 1.0 2.0 2.0 18.0 200.0 2.0 13.0 2.0

MA1655.2_rc_shift7 (ZNF341_rc)
; oligos_6nt_mkv1_m4 versus MA1655.2_rc (ZNF341_rc); m=6/8; ncol2=8; w=0; offset=3; strand=R; shift=7; score=0.46591; -------gGCTGTT ; cor=; Ncor= a 0 0 0 0 0 0 0 2411.0 228.0 229.0 234.0 581.0 241.0 186.0 c 0 0 0 0 0 0 0 2289.0 270.0 17972.0 468.0 1033.0 576.0 513.0 g 0 0 0 0 0 0 0 10946.0 18003.0 359.0 399.0 16813.0 211.0 955.0 t 0 0 0 0 0 0 0 3082.0 227.0 168.0 17627.0 301.0 17700.0 17074.0

MA1596.1_rc_shift0 (ZNF460_rc)
; oligos_6nt_mkv1_m4 versus MA1596.1_rc (ZNF460_rc); m=7/8; ncol2=16; w=-4; offset=-4; strand=R; shift=0; score=0.465279; CyyGGGAGGCkGAG ; cor=; Ncor= a 64.0 29.0 56.0 40.0 9.0 10.0 1570.0 6.0 11.0 35.0 85.0 29.0 1284.0 66.0 c 1147.0 421.0 930.0 27.0 15.0 15.0 17.0 9.0 7.0 1493.0 181.0 47.0 83.0 67.0 g 158.0 175.0 110.0 1533.0 1583.0 1584.0 12.0 1596.0 1588.0 23.0 495.0 1519.0 218.0 1460.0 t 243.0 987.0 516.0 12.0 5.0 3.0 13.0 1.0 6.0 61.0 851.0 17.0 27.0 19.0

MA0812.2_shift1 (TFAP2B)
; oligos_6nt_mkv1_m4 versus MA0812.2 (TFAP2B); m=8/8; ncol2=9; w=-3; offset=-3; strand=D; shift=1; score=0.428088; -GCCysAGGC---- ; cor=; Ncor= a 0 36.0 0.0 0.0 16.0 576.0 3480.0 235.0 6.0 47.0 0 0 0 0 c 0 609.0 4549.0 4549.0 1204.0 2126.0 608.0 4.0 10.0 4250.0 0 0 0 0 g 0 3940.0 4.0 1.0 612.0 1498.0 446.0 4549.0 4549.0 299.0 0 0 0 0 t 0 30.0 0.0 158.0 2716.0 348.0 14.0 2.0 1.0 25.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv1_m1_shift0 ; 32 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv1_m1_shift0 (oligos_6nt_mkv1_m1)
; oligos_6nt_mkv1_m1; m=0 (reference); ncol1=14; shift=0; ncol=14; yskCCCCGCCCsss ; Alignment reference a 8 8 3 0 0 0 0 1 3 1 1 4 10 8 c 20 14 11 42 46 44 44 0 42 43 43 14 18 23 g 7 20 21 3 0 2 2 45 2 2 3 19 14 13 t 12 5 12 2 1 1 1 1 0 1 0 10 5 3

MA1961.2_rc_shift2 (PATZ1_rc)
; oligos_6nt_mkv1_m1 versus MA1961.2_rc (PATZ1_rc); m=1/31; ncol2=11; w=0; offset=2; strand=R; shift=2; score=0.72153; --sCCCCkCCCCs- ; cor=; Ncor= a 0 0 34.0 1.0 1.0 1.0 1.0 155.0 1.0 1.0 1.0 24.0 44.0 0 c 0 0 523.0 944.0 964.0 957.0 997.0 1.0 997.0 997.0 727.0 680.0 543.0 0 g 0 0 392.0 1.0 34.0 41.0 1.0 489.0 1.0 1.0 78.0 228.0 288.0 0 t 0 0 51.0 54.0 1.0 1.0 1.0 355.0 1.0 1.0 195.0 68.0 125.0 0

MA0599.1_shift2 (KLF5)
; oligos_6nt_mkv1_m1 versus MA0599.1 (KLF5); m=2/31; ncol2=10; w=0; offset=2; strand=D; shift=2; score=0.64479; --gCCMCrCCCh-- ; cor=; Ncor= a 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 c 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 g 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 t 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0

MA0746.3_shift2 (SP3)
; oligos_6nt_mkv1_m1 versus MA0746.3 (SP3); m=3/31; ncol2=11; w=0; offset=2; strand=D; shift=2; score=0.64382; --rCCACGCCCmC- ; cor=; Ncor= a 0 0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 0 c 0 0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 0 g 0 0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 0 t 0 0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0 0

MA0741.1_shift2 (KLF16)
; oligos_6nt_mkv1_m1 versus MA0741.1 (KLF16); m=4/31; ncol2=11; w=0; offset=2; strand=D; shift=2; score=0.622579; --gmCMCgCCCMC- ; cor=; Ncor= a 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 0 c 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 0 g 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 0 t 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0 0

MA0742.2_rc_shift3 (KLF12_rc)
; oligos_6nt_mkv1_m1 versus MA0742.2_rc (KLF12_rc); m=5/31; ncol2=9; w=0; offset=3; strand=R; shift=3; score=0.612492; ---CCCCGCCCC-- ; cor=; Ncor= a 0 0 0 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 0 0 c 0 0 0 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 0 0 g 0 0 0 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 0 0 t 0 0 0 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948 0 0

MA0516.3_rc_shift3 (SP2_rc)
; oligos_6nt_mkv1_m1 versus MA0516.3_rc (SP2_rc); m=6/31; ncol2=9; w=0; offset=3; strand=R; shift=3; score=0.603578; ---cCCCGCCCC-- ; cor=; Ncor= a 0 0 0 18.3284 0.733138 24.1935 0.733138 0.733138 0.733138 0.733138 0.733138 79.912 0 0 c 0 0 0 610.704 877.566 974.34 997.801 0.733138 997.801 997.801 830.645 766.129 0 0 g 0 0 0 164.956 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 0.733138 0 0 t 0 0 0 206.012 120.968 0.733138 0.733138 112.17 0.733138 0.733138 167.889 153.226 0 0

MA0740.2_rc_shift3 (KLF14_rc)
; oligos_6nt_mkv1_m1 versus MA0740.2_rc (KLF14_rc); m=7/31; ncol2=9; w=0; offset=3; strand=R; shift=3; score=0.601575; ---CCMCGCCCm-- ; cor=; Ncor= a 0 0 0 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 0 0 c 0 0 0 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 0 0 g 0 0 0 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 0 0 t 0 0 0 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158 0 0

MA0685.2_rc_shift3 (SP4_rc)
; oligos_6nt_mkv1_m1 versus MA0685.2_rc (SP4_rc); m=8/31; ncol2=9; w=0; offset=3; strand=R; shift=3; score=0.600611; ---CyCCKCCCc-- ; cor=; Ncor= a 0 0 0 0.686813 50.1374 77.6099 0.686813 0.686813 0.686813 0.686813 0.686813 195.742 0 0 c 0 0 0 997.94 660.027 921.016 997.94 0.686813 997.94 997.94 997.94 654.533 0 0 g 0 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 0 t 0 0 0 0.686813 289.148 0.686813 0.686813 275.412 0.686813 0.686813 0.686813 149.038 0 0

MA1511.2_rc_shift3 (KLF10_rc)
; oligos_6nt_mkv1_m1 versus MA1511.2_rc (KLF10_rc); m=9/31; ncol2=9; w=0; offset=3; strand=R; shift=3; score=0.60052; ---CCMCGCCCC-- ; cor=; Ncor= a 0 0 0 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 0 0 c 0 0 0 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 0 0 g 0 0 0 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 0 0 t 0 0 0 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427 0 0

MA1564.2_shift3 (SP9)
; oligos_6nt_mkv1_m1 versus MA1564.2 (SP9); m=10/31; ncol2=10; w=0; offset=3; strand=D; shift=3; score=0.598853; ---cCmCGCCCmc- ; cor=; Ncor= a 0 0 0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 0 c 0 0 0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 0 g 0 0 0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 0 t 0 0 0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0 0

MA0747.2_shift3 (SP8)
; oligos_6nt_mkv1_m1 versus MA0747.2 (SP8); m=11/31; ncol2=11; w=0; offset=3; strand=D; shift=3; score=0.591059; ---mCACgCCCmCy ; cor=; Ncor= a 0 0 0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 13.0 31.0 c 0 0 0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 167.0 52.0 g 0 0 0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 21.0 1.0 t 0 0 0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0 39.0 82.0

MA1516.2_shift1 (KLF3)
; oligos_6nt_mkv1_m1 versus MA1516.2 (KLF3); m=12/31; ncol2=10; w=0; offset=1; strand=D; shift=1; score=0.588635; -grCCrCGCCC--- ; cor=; Ncor= a 0 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 0 0 0 c 0 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 0 0 0 g 0 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 0 0 0 t 0 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 0 0 0

MA1653.2_shift3 (ZNF148)
; oligos_6nt_mkv1_m1 versus MA1653.2 (ZNF148); m=13/31; ncol2=10; w=0; offset=3; strand=D; shift=3; score=0.586619; ---CCCCTCCCcc- ; cor=; Ncor= a 0 0 0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 c 0 0 0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 g 0 0 0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 t 0 0 0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0

MA0079.5_rc_shift3 (SP1_rc)
; oligos_6nt_mkv1_m1 versus MA0079.5_rc (SP1_rc); m=14/31; ncol2=9; w=0; offset=3; strand=R; shift=3; score=0.582296; ---CyCCKCCCC-- ; cor=; Ncor= a 0 0 0 1.05485 34.8101 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 47.4684 0 0 c 0 0 0 836.498 659.283 912.447 996.835 1.05485 996.835 996.835 996.835 950.422 0 0 g 0 0 0 1.05485 51.6878 85.443 1.05485 731.013 1.05485 1.05485 1.05485 1.05485 0 0 t 0 0 0 161.392 254.219 1.05485 1.05485 266.878 1.05485 1.05485 1.05485 1.05485 0 0

MA2328.1_shift4 (ZBED4)
; oligos_6nt_mkv1_m1 versus MA2328.1 (ZBED4); m=15/31; ncol2=10; w=0; offset=4; strand=D; shift=4; score=0.579418; ----CcCGCyCCGC ; cor=; Ncor= a 0 0 0 0 41.0 26.0 29.0 17.0 6.0 11.0 14.0 12.0 22.0 19.0 c 0 0 0 0 479.0 419.0 549.0 14.0 621.0 391.0 598.0 604.0 19.0 589.0 g 0 0 0 0 80.0 65.0 62.0 608.0 26.0 28.0 34.0 23.0 580.0 35.0 t 0 0 0 0 60.0 150.0 20.0 21.0 7.0 230.0 14.0 21.0 39.0 17.0

MA1630.3_rc_shift3 (ZNF281_rc)
; oligos_6nt_mkv1_m1 versus MA1630.3_rc (ZNF281_rc); m=16/31; ncol2=10; w=0; offset=3; strand=R; shift=3; score=0.566028; ---CCCCTCCCCC- ; cor=; Ncor= a 0 0 0 7.0 18.0 1.0 105.0 96.0 1.0 1.0 1.0 1.0 1.0 0 c 0 0 0 920.0 940.0 998.0 772.0 1.0 998.0 998.0 963.0 998.0 998.0 0 g 0 0 0 27.0 1.0 1.0 1.0 183.0 1.0 1.0 1.0 1.0 1.0 0 t 0 0 0 47.0 41.0 1.0 122.0 720.0 1.0 1.0 35.0 1.0 1.0 0

MA1513.2_shift3 (KLF15)
; oligos_6nt_mkv1_m1 versus MA1513.2 (KLF15); m=17/31; ncol2=8; w=0; offset=3; strand=D; shift=3; score=0.561569; ---cCCCGCCC--- ; cor=; Ncor= a 0 0 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 0 0 c 0 0 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 0 0 g 0 0 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 0 0 t 0 0 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0 0 0

MA1512.2_shift3 (KLF11)
; oligos_6nt_mkv1_m1 versus MA1512.2 (KLF11); m=18/31; ncol2=10; w=0; offset=3; strand=D; shift=3; score=0.550106; ---cCACGCCCmC- ; cor=; Ncor= a 0 0 0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 0 c 0 0 0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 0 g 0 0 0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 0 t 0 0 0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0 0

MA1959.2_rc_shift3 (KLF7_rc)
; oligos_6nt_mkv1_m1 versus MA1959.2_rc (KLF7_rc); m=19/31; ncol2=8; w=0; offset=3; strand=R; shift=3; score=0.548888; ---CcMCGCCC--- ; cor=; Ncor= a 0 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 0 0 c 0 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 0 0 g 0 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 0 0 t 0 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0 0 0

MA0753.3_shift3 (ZNF740)
; oligos_6nt_mkv1_m1 versus MA0753.3 (ZNF740); m=20/31; ncol2=10; w=0; offset=3; strand=D; shift=3; score=0.540579; ---CCCCCCCCAc- ; cor=; Ncor= a 0 0 0 60.0 110.0 18.0 22.0 23.0 10.0 2.0 115.0 1055.0 207.0 0 c 0 0 0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 239.0 1055.0 0 g 0 0 0 37.0 14.0 4.0 7.0 3.0 7.0 3.0 6.0 68.0 54.0 0 t 0 0 0 49.0 1.0 16.0 15.0 11.0 6.0 3.0 4.0 134.0 246.0 0

MA0493.3_rc_shift3 (KLF1_rc)
; oligos_6nt_mkv1_m1 versus MA0493.3_rc (KLF1_rc); m=21/31; ncol2=8; w=0; offset=3; strand=R; shift=3; score=0.539308; ---CCmCrCCC--- ; cor=; Ncor= a 0 0 0 1.0 21.0 324.0 1.0 346.0 1.0 1.0 1.0 0 0 0 c 0 0 0 998.0 896.0 675.0 998.0 1.0 998.0 998.0 998.0 0 0 0 g 0 0 0 1.0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 0 0 0 t 0 0 0 1.0 82.0 1.0 1.0 125.0 1.0 1.0 1.0 0 0 0

MA1515.2_shift3 (KLF2)
; oligos_6nt_mkv1_m1 versus MA1515.2 (KLF2); m=22/31; ncol2=8; w=0; offset=3; strand=D; shift=3; score=0.503425; ---CCmCrCCC--- ; cor=; Ncor= a 0 0 0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 0 0 0 c 0 0 0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 0 0 0 g 0 0 0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 0 0 0 t 0 0 0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 0 0 0

MA1517.2_shift3 (KLF6)
; oligos_6nt_mkv1_m1 versus MA1517.2 (KLF6); m=23/31; ncol2=9; w=0; offset=3; strand=D; shift=3; score=0.501415; ---cCACRCCCm-- ; cor=; Ncor= a 0 0 0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 0 0 c 0 0 0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 0 0 g 0 0 0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 0 0 t 0 0 0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0 0 0

MA0039.5_shift3 (KLF4)
; oligos_6nt_mkv1_m1 versus MA0039.5 (KLF4); m=24/31; ncol2=8; w=0; offset=3; strand=D; shift=3; score=0.485787; ---CCCCACCC--- ; cor=; Ncor= a 0 0 0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 0 0 0 c 0 0 0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 0 0 0 g 0 0 0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 0 0 0 t 0 0 0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 0 0 0

MA1522.2_shift3 (MAZ)
; oligos_6nt_mkv1_m1 versus MA1522.2 (MAZ); m=25/31; ncol2=8; w=0; offset=3; strand=D; shift=3; score=0.45843; ---CCCCTCCc--- ; cor=; Ncor= a 0 0 0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 0 0 0 c 0 0 0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 0 0 0 g 0 0 0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 0 0 0 t 0 0 0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 0 0 0

MA0471.3_rc_shift2 (E2F6_rc)
; oligos_6nt_mkv1_m1 versus MA0471.3_rc (E2F6_rc); m=26/31; ncol2=8; w=0; offset=2; strand=R; shift=2; score=0.450567; --TTCCCGCC---- ; cor=; Ncor= a 0 0 757.0 268.0 296.0 353.0 813.0 2125.0 205.0 453.0 0 0 0 0 c 0 0 5021.0 2322.0 31614.0 31973.0 30573.0 693.0 31790.0 29387.0 0 0 0 0 g 0 0 1595.0 1171.0 834.0 434.0 539.0 26424.0 837.0 1148.0 0 0 0 0 t 0 0 25725.0 29337.0 354.0 338.0 1173.0 3856.0 266.0 2110.0 0 0 0 0

MA0162.5_shift5 (EGR1)
; oligos_6nt_mkv1_m1 versus MA0162.5 (EGR1); m=27/31; ncol2=10; w=0; offset=5; strand=D; shift=5; score=0.447086; -----mCGCCCACg ; cor=; Ncor= a 0 0 0 0 0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 c 0 0 0 0 0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 g 0 0 0 0 0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 t 0 0 0 0 0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0

MA0733.2_shift5 (EGR4)
; oligos_6nt_mkv1_m1 versus MA0733.2 (EGR4); m=28/31; ncol2=11; w=0; offset=5; strand=D; shift=5; score=0.429239; -----mCGCCCACG ; cor=; Ncor= a 0 0 0 0 0 2745.0 101.0 556.0 11.0 120.0 0.0 4500.0 44.0 233.0 c 0 0 0 0 0 1924.0 4466.0 475.0 4447.0 4448.0 4403.0 1055.0 4402.0 1793.0 g 0 0 0 0 0 151.0 150.0 7053.0 63.0 107.0 110.0 348.0 114.0 6862.0 t 0 0 0 0 0 158.0 319.0 707.0 88.0 76.0 131.0 363.0 245.0 253.0

MA1122.2_rc_shift2 (TFDP1_rc)
; oligos_6nt_mkv1_m1 versus MA1122.2_rc (TFDP1_rc); m=29/31; ncol2=8; w=0; offset=2; strand=R; shift=2; score=0.422569; --TTCCCGCs---- ; cor=; Ncor= a 0 0 55.0 30.0 29.0 26.0 7.0 71.0 26.0 120.0 0 0 0 0 c 0 0 137.0 98.0 1919.0 1865.0 1932.0 22.0 1862.0 940.0 0 0 0 0 g 0 0 170.0 24.0 32.0 80.0 54.0 1886.0 71.0 684.0 0 0 0 0 t 0 0 1645.0 1855.0 27.0 36.0 14.0 28.0 48.0 263.0 0 0 0 0

MA0732.2_shift5 (EGR3)
; oligos_6nt_mkv1_m1 versus MA0732.2 (EGR3); m=30/31; ncol2=11; w=0; offset=5; strand=D; shift=5; score=0.418872; -----mCGCCCMCG ; cor=; Ncor= a 0 0 0 0 0 1031.0 2.0 66.0 0.0 0.0 0.0 1159.0 0.0 39.0 c 0 0 0 0 0 701.0 1855.0 32.0 1856.0 1858.0 1823.0 455.0 1875.0 28.0 g 0 0 0 0 0 10.0 0.0 2158.0 2.0 0.0 7.0 11.0 7.0 2152.0 t 0 0 0 0 0 20.0 13.0 36.0 0.0 10.0 80.0 4.0 2.0 26.0

MA1615.2_rc_shift0 (Plagl1_rc)
; oligos_6nt_mkv1_m1 versus MA1615.2_rc (Plagl1_rc); m=31/31; ncol2=8; w=0; offset=0; strand=R; shift=0; score=0.402698; TGGCCCCa------ ; cor=; Ncor= a 371.0 398.0 321.0 142.0 183.0 323.0 118.0 9425.0 0 0 0 0 0 0 c 1032.0 422.0 313.0 13495.0 13517.0 12261.0 13595.0 1338.0 0 0 0 0 0 0 g 686.0 13152.0 12737.0 336.0 266.0 356.0 243.0 1471.0 0 0 0 0 0 0 t 12064.0 181.0 782.0 180.0 187.0 1213.0 197.0 1919.0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv1_m3_shift1 ; 11 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv1_m3_shift1 (oligos_7nt_mkv1_m3)
; oligos_7nt_mkv1_m3; m=0 (reference); ncol1=12; shift=1; ncol=13; -ssCACACGCmss ; Alignment reference a 0 1 2 0 12 0 14 0 0 0 9 3 2 c 0 8 8 15 1 14 2 16 0 16 4 4 7 g 0 5 5 1 3 1 0 0 16 0 2 7 6 t 0 2 1 0 0 1 0 0 0 0 1 2 1

MA1107.3_shift1 (KLF9)
; oligos_7nt_mkv1_m3 versus MA1107.3 (KLF9); m=1/10; ncol2=11; w=0; offset=0; strand=D; shift=1; score=0.673001; -gCCACACCCAC- ; cor=; Ncor= a 0 2862.0 4664.0 287.0 21899.0 221.0 19187.0 224.0 2428.0 146.0 18837.0 792.0 0 c 0 4342.0 17839.0 24709.0 2559.0 24863.0 1070.0 24365.0 22117.0 24682.0 4339.0 20644.0 0 g 0 16852.0 1660.0 291.0 708.0 353.0 4340.0 735.0 605.0 205.0 852.0 1778.0 0 t 0 1523.0 1416.0 292.0 413.0 142.0 982.0 255.0 429.0 546.0 1551.0 2365.0 0

MA0472.2_shift0 (EGR2)
; oligos_7nt_mkv1_m3 versus MA0472.2 (EGR2); m=2/10; ncol2=11; w=-1; offset=-1; strand=D; shift=0; score=0.598681; mCGCCCACGCa-- ; cor=; Ncor= a 1157.0 0.0 295.0 6.0 24.0 0.0 2147.0 0.0 106.0 4.0 1731.0 0 0 c 679.0 1551.0 0.0 1558.0 1554.0 1468.0 110.0 1573.0 0.0 1585.0 157.0 0 0 g 94.0 28.0 3731.0 25.0 15.0 38.0 26.0 2.0 4034.0 20.0 542.0 0 0 t 142.0 73.0 222.0 29.0 13.0 277.0 2.0 23.0 171.0 115.0 430.0 0 0

MA0733.2_shift0 (EGR4)
; oligos_7nt_mkv1_m3 versus MA0733.2 (EGR4); m=3/10; ncol2=11; w=-1; offset=-1; strand=D; shift=0; score=0.595092; mCGCCCACGCA-- ; cor=; Ncor= a 2745.0 101.0 556.0 11.0 120.0 0.0 4500.0 44.0 233.0 10.0 4608.0 0 0 c 1924.0 4466.0 475.0 4447.0 4448.0 4403.0 1055.0 4402.0 1793.0 4354.0 839.0 0 0 g 151.0 150.0 7053.0 63.0 107.0 110.0 348.0 114.0 6862.0 183.0 829.0 0 0 t 158.0 319.0 707.0 88.0 76.0 131.0 363.0 245.0 253.0 219.0 483.0 0 0

MA0732.2_shift0 (EGR3)
; oligos_7nt_mkv1_m3 versus MA0732.2 (EGR3); m=4/10; ncol2=11; w=-1; offset=-1; strand=D; shift=0; score=0.592922; mCGCCCMCGCA-- ; cor=; Ncor= a 1031.0 2.0 66.0 0.0 0.0 0.0 1159.0 0.0 39.0 2.0 1262.0 0 0 c 701.0 1855.0 32.0 1856.0 1858.0 1823.0 455.0 1875.0 28.0 1899.0 54.0 0 0 g 10.0 0.0 2158.0 2.0 0.0 7.0 11.0 7.0 2152.0 1.0 168.0 0 0 t 20.0 13.0 36.0 0.0 10.0 80.0 4.0 2.0 26.0 21.0 80.0 0 0

MA0162.5_shift0 (EGR1)
; oligos_7nt_mkv1_m3 versus MA0162.5 (EGR1); m=5/10; ncol2=10; w=-1; offset=-1; strand=D; shift=0; score=0.530631; mCGCCCACgC--- ; cor=; Ncor= a 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 969.0 0 0 0 c 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 25196.0 0 0 0 g 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 2157.0 0 0 0 t 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0 2276.0 0 0 0

MA0632.3_shift2 (TCFL5)
; oligos_7nt_mkv1_m3 versus MA0632.3 (TCFL5); m=6/10; ncol2=8; w=0; offset=1; strand=D; shift=2; score=0.495734; --kCrCGCGC--- ; cor=; Ncor= a 0 0 2810.0 0.0 72543.0 0.0 1566.0 1765.0 3520.0 1593.0 0 0 0 c 0 0 10582.0 72543.0 0.0 72543.0 0.0 57092.0 657.0 72543.0 0 0 0 g 0 0 22297.0 0.0 29710.0 0.0 72543.0 0.0 72543.0 4594.0 0 0 0 t 0 0 36854.0 0.0 9359.0 1643.0 0.0 15451.0 0.0 635.0 0 0 0

MA1512.2_shift4 (KLF11)
; oligos_7nt_mkv1_m3 versus MA1512.2 (KLF11); m=7/10; ncol2=10; w=0; offset=3; strand=D; shift=4; score=0.485635; ----cCACGCCCm ; cor=; Ncor= a 0 0 0 0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 c 0 0 0 0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 g 0 0 0 0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 t 0 0 0 0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0

MA1099.3_rc_shift5 (HES1_rc)
; oligos_7nt_mkv1_m3 versus MA1099.3_rc (HES1_rc); m=8/10; ncol2=8; w=0; offset=4; strand=R; shift=5; score=0.485476; -----CACGyGcc ; cor=; Ncor= a 0 0 0 0 0 53.0 18526.0 0.0 791.0 232.0 18.0 8007.0 4239.0 c 0 0 0 0 0 18526.0 0.0 18526.0 0.0 9081.0 0.0 18526.0 18526.0 g 0 0 0 0 0 0.0 4057.0 0.0 18526.0 0.0 18526.0 2072.0 3492.0 t 0 0 0 0 0 1.0 253.0 21.0 0.0 9446.0 464.0 5858.0 3321.0

MA0006.2_rc_shift5 (Ahr::Arnt_rc)
; oligos_7nt_mkv1_m3 versus MA0006.2_rc (Ahr::Arnt_rc); m=9/10; ncol2=5; w=0; offset=4; strand=R; shift=5; score=0.412874; -----CACGC--- ; cor=; Ncor= a 0 0 0 0 0 0.0 24.0 1.0 1.0 1.0 0 0 0 c 0 0 0 0 0 24.0 0.0 23.0 0.0 23.0 0 0 0 g 0 0 0 0 0 0.0 0.0 0.0 23.0 0.0 0 0 0 t 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 0 0 0

MA0039.5_shift0 (KLF4)
; oligos_7nt_mkv1_m3 versus MA0039.5 (KLF4); m=10/10; ncol2=8; w=-1; offset=-1; strand=D; shift=0; score=0.401412; CCCCACCC----- ; cor=; Ncor= a 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 0 0 0 0 0 c 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 0 0 0 0 0 g 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 0 0 0 0 0 t 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv1_m5_shift0 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv1_m5_shift0 (oligos_6nt_mkv1_m5)
; oligos_6nt_mkv1_m5; m=0 (reference); ncol1=10; shift=0; ncol=10; ssCCCGGCsc ; Alignment reference a 7 5 1 0 0 0 3 0 7 5 c 10 13 33 34 34 0 0 34 13 14 g 10 12 0 0 0 34 31 0 11 8 t 7 4 0 0 0 0 0 0 3 7

MA0516.3_rc_shift1 (SP2_rc)
; oligos_6nt_mkv1_m5 versus MA0516.3_rc (SP2_rc); m=1/3; ncol2=9; w=0; offset=1; strand=R; shift=1; score=0.660411; -cCCCGCCCC ; cor=; Ncor= a 0 18.3284 0.733138 24.1935 0.733138 0.733138 0.733138 0.733138 0.733138 79.912 c 0 610.704 877.566 974.34 997.801 0.733138 997.801 997.801 830.645 766.129 g 0 164.956 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 0.733138 t 0 206.012 120.968 0.733138 0.733138 112.17 0.733138 0.733138 167.889 153.226

MA1513.2_shift1 (KLF15)
; oligos_6nt_mkv1_m5 versus MA1513.2 (KLF15); m=2/3; ncol2=8; w=0; offset=1; strand=D; shift=1; score=0.599675; -cCCCGCCC- ; cor=; Ncor= a 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 c 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 g 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 t 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0

MA2121.1_shift0 (ZNF213)
; oligos_6nt_mkv1_m5 versus MA2121.1 (ZNF213); m=3/3; ncol2=12; w=0; offset=0; strand=D; shift=0; score=0.587897; gCCCAGGCwG ; cor=; Ncor= a 119.0 26.0 18.0 15.0 577.0 10.0 12.0 16.0 229.0 42.0 c 89.0 581.0 603.0 630.0 34.0 13.0 25.0 642.0 97.0 76.0 g 403.0 52.0 34.0 34.0 54.0 661.0 639.0 22.0 124.0 519.0 t 76.0 28.0 32.0 8.0 22.0 3.0 11.0 7.0 237.0 50.0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv1_m2_shift3 ; 7 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv1_m2_shift3 (oligos_6nt_mkv1_m2)
; oligos_6nt_mkv1_m2; m=0 (reference); ncol1=10; shift=3; ncol=13; ---sbAAATATkw ; Alignment reference a 0 0 0 4 5 21 19 22 1 18 1 4 6 c 0 0 0 9 6 1 1 1 1 2 0 2 3 g 0 0 0 6 6 1 1 0 2 3 1 7 2 t 0 0 0 4 6 0 2 0 19 0 21 10 12

MA0602.2_rc_shift5 (Arid5a_rc)
; oligos_6nt_mkv1_m2 versus MA0602.2_rc (Arid5a_rc); m=1/6; ncol2=8; w=0; offset=2; strand=R; shift=5; score=0.648708; -----cAATATTr ; cor=; Ncor= a 0 0 0 0 0 22.0 83.0 96.0 6.0 93.0 2.0 5.0 48.0 c 0 0 0 0 0 52.0 4.0 1.0 1.0 1.0 1.0 7.0 3.0 g 0 0 0 0 0 3.0 9.0 1.0 1.0 0.0 0.0 3.0 32.0 t 0 0 0 0 0 23.0 4.0 2.0 93.0 6.0 96.0 85.0 16.0

MA2124.1_rc_shift3 (Hmga1_rc)
; oligos_6nt_mkv1_m2 versus MA2124.1_rc (Hmga1_rc); m=2/6; ncol2=8; w=0; offset=0; strand=R; shift=3; score=0.56959; ---wTAAAAAT-- ; cor=; Ncor= a 0 0 0 11340.0 542.0 24333.0 24654.0 24779.0 24269.0 24172.0 496.0 0 0 c 0 0 0 2438.0 358.0 294.0 237.0 138.0 303.0 421.0 188.0 0 0 g 0 0 0 2348.0 473.0 409.0 264.0 194.0 200.0 393.0 71.0 0 0 t 0 0 0 9680.0 24433.0 770.0 651.0 695.0 1034.0 820.0 25051.0 0 0

MA0033.2_shift3 (FOXL1)
; oligos_6nt_mkv1_m2 versus MA0033.2 (FOXL1); m=3/6; ncol2=7; w=0; offset=0; strand=D; shift=3; score=0.503211; ---rTAAACA--- ; cor=; Ncor= a 0 0 0 2102.0 10.0 4780.0 4780.0 4780.0 0.0 4780.0 0 0 0 c 0 0 0 13.0 416.0 628.0 38.0 82.0 3723.0 54.0 0 0 0 g 0 0 0 2678.0 0.0 57.0 0.0 50.0 0.0 0.0 0 0 0 t 0 0 0 140.0 4780.0 0.0 15.0 0.0 1057.0 17.0 0 0 0

MA0032.2_shift0 (FOXC1)
; oligos_6nt_mkv1_m2 versus MA0032.2 (FOXC1); m=4/6; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score=0.482354; wAwRTMAAyAw-- ; cor=; Ncor= a 6452.0 14324.0 7893.0 4858.0 2496.0 13117.0 18489.0 18489.0 122.0 18489.0 6702.0 0 0 c 772.0 728.0 2008.0 336.0 1652.0 5372.0 108.0 56.0 8782.0 27.0 1558.0 0 0 g 304.0 4165.0 2422.0 13631.0 390.0 21.0 0.0 141.0 165.0 433.0 1107.0 0 0 t 12038.0 1386.0 10596.0 51.0 18489.0 45.0 57.0 112.0 9708.0 184.0 11787.0 0 0

MA0845.1_shift0 (FOXB1)
; oligos_6nt_mkv1_m2 versus MA0845.1 (FOXB1); m=5/6; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score=0.481092; wAwGTMAAyAt-- ; cor=; Ncor= a 2393.0 5343.0 1983.0 1159.0 180.0 4891.0 6841.0 6841.0 28.0 6841.0 1704.0 0 0 c 272.0 263.0 218.0 54.0 240.0 1950.0 213.0 47.0 2252.0 0.0 573.0 0 0 g 190.0 1498.0 409.0 6841.0 113.0 75.0 0.0 47.0 104.0 157.0 556.0 0 0 t 4448.0 561.0 4858.0 124.0 6841.0 73.0 381.0 216.0 4589.0 147.0 4008.0 0 0

MA0052.5_shift1 (MEF2A)
; oligos_6nt_mkv1_m2 versus MA0052.5 (MEF2A); m=6/6; ncol2=10; w=-2; offset=-2; strand=D; shift=1; score=0.470205; -cTAAAAATAG-- ; cor=; Ncor= a 0 1984.0 627.0 12437.0 13132.0 14680.0 14453.0 14956.0 441.0 15582.0 2566.0 0 0 c 0 10919.0 2974.0 1013.0 253.0 141.0 231.0 173.0 349.0 50.0 1060.0 0 0 g 0 1007.0 236.0 1066.0 610.0 506.0 241.0 202.0 215.0 422.0 11104.0 0 0 t 0 2252.0 12325.0 1646.0 2167.0 835.0 1237.0 831.0 15157.0 108.0 1432.0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv1_m4_shift4 ; 16 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv1_m4_shift4 (oligos_7nt_mkv1_m4)
; oligos_7nt_mkv1_m4; m=0 (reference); ncol1=12; shift=4; ncol=16; ----ssCCGCCGCGss ; Alignment reference a 0 0 0 0 3 2 3 1 0 0 3 0 0 0 1 6 c 0 0 0 0 12 15 29 33 2 32 26 3 31 6 15 13 g 0 0 0 0 12 16 2 0 31 2 5 31 2 27 12 10 t 0 0 0 0 7 1 0 0 1 0 0 0 1 1 6 5

MA2328.1_shift5 (ZBED4)
; oligos_7nt_mkv1_m4 versus MA2328.1 (ZBED4); m=1/15; ncol2=10; w=0; offset=1; strand=D; shift=5; score=0.630372; -----CcCGCyCCGC- ; cor=; Ncor= a 0 0 0 0 0 41.0 26.0 29.0 17.0 6.0 11.0 14.0 12.0 22.0 19.0 0 c 0 0 0 0 0 479.0 419.0 549.0 14.0 621.0 391.0 598.0 604.0 19.0 589.0 0 g 0 0 0 0 0 80.0 65.0 62.0 608.0 26.0 28.0 34.0 23.0 580.0 35.0 0 t 0 0 0 0 0 60.0 150.0 20.0 21.0 7.0 230.0 14.0 21.0 39.0 17.0 0

MA1713.2_shift6 (ZNF610)
; oligos_7nt_mkv1_m4 versus MA1713.2 (ZNF610); m=2/15; ncol2=10; w=0; offset=2; strand=D; shift=6; score=0.608936; ------scGCCGCTCC ; cor=; Ncor= a 0 0 0 0 0 0 176.0 354.0 68.0 37.0 18.0 18.0 4.0 18.0 6.0 123.0 c 0 0 0 0 0 0 1222.0 1347.0 121.0 2245.0 2312.0 45.0 2357.0 34.0 2315.0 1976.0 g 0 0 0 0 0 0 738.0 392.0 2118.0 84.0 41.0 2312.0 21.0 45.0 62.0 186.0 t 0 0 0 0 0 0 250.0 293.0 79.0 20.0 15.0 11.0 4.0 2289.0 3.0 101.0

MA0516.3_rc_shift4 (SP2_rc)
; oligos_7nt_mkv1_m4 versus MA0516.3_rc (SP2_rc); m=3/15; ncol2=9; w=0; offset=0; strand=R; shift=4; score=0.580909; ----cCCCGCCCC--- ; cor=; Ncor= a 0 0 0 0 18.3284 0.733138 24.1935 0.733138 0.733138 0.733138 0.733138 0.733138 79.912 0 0 0 c 0 0 0 0 610.704 877.566 974.34 997.801 0.733138 997.801 997.801 830.645 766.129 0 0 0 g 0 0 0 0 164.956 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 0.733138 0 0 0 t 0 0 0 0 206.012 120.968 0.733138 0.733138 112.17 0.733138 0.733138 167.889 153.226 0 0 0

MA0079.5_rc_shift4 (SP1_rc)
; oligos_7nt_mkv1_m4 versus MA0079.5_rc (SP1_rc); m=4/15; ncol2=9; w=0; offset=0; strand=R; shift=4; score=0.556107; ----CyCCKCCCC--- ; cor=; Ncor= a 0 0 0 0 1.05485 34.8101 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 47.4684 0 0 0 c 0 0 0 0 836.498 659.283 912.447 996.835 1.05485 996.835 996.835 996.835 950.422 0 0 0 g 0 0 0 0 1.05485 51.6878 85.443 1.05485 731.013 1.05485 1.05485 1.05485 1.05485 0 0 0 t 0 0 0 0 161.392 254.219 1.05485 1.05485 266.878 1.05485 1.05485 1.05485 1.05485 0 0 0

MA0742.2_rc_shift4 (KLF12_rc)
; oligos_7nt_mkv1_m4 versus MA0742.2_rc (KLF12_rc); m=5/15; ncol2=9; w=0; offset=0; strand=R; shift=4; score=0.54005; ----CCCCGCCCC--- ; cor=; Ncor= a 0 0 0 0 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 0 0 0 c 0 0 0 0 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 0 0 0 g 0 0 0 0 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 0 0 0 t 0 0 0 0 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948 0 0 0

MA1511.2_rc_shift4 (KLF10_rc)
; oligos_7nt_mkv1_m4 versus MA1511.2_rc (KLF10_rc); m=6/15; ncol2=9; w=0; offset=0; strand=R; shift=4; score=0.536054; ----CCMCGCCCC--- ; cor=; Ncor= a 0 0 0 0 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 0 0 0 c 0 0 0 0 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 0 0 0 g 0 0 0 0 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 0 0 0 t 0 0 0 0 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427 0 0 0

MA0740.2_rc_shift4 (KLF14_rc)
; oligos_7nt_mkv1_m4 versus MA0740.2_rc (KLF14_rc); m=7/15; ncol2=9; w=0; offset=0; strand=R; shift=4; score=0.527162; ----CCMCGCCCm--- ; cor=; Ncor= a 0 0 0 0 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 0 0 0 c 0 0 0 0 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 0 0 0 g 0 0 0 0 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 0 0 0 t 0 0 0 0 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158 0 0 0

MA1513.2_shift4 (KLF15)
; oligos_7nt_mkv1_m4 versus MA1513.2 (KLF15); m=8/15; ncol2=8; w=0; offset=0; strand=D; shift=4; score=0.498885; ----cCCCGCCC---- ; cor=; Ncor= a 0 0 0 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 0 0 0 c 0 0 0 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 0 0 0 g 0 0 0 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 0 0 0 t 0 0 0 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0 0 0 0

MA1584.2_shift0 (ZIC5)
; oligos_7nt_mkv1_m4 versus MA1584.2 (ZIC5); m=9/15; ncol2=15; w=-4; offset=-4; strand=D; shift=0; score=0.498104; gACCCCCCGCtGyGm- ; cor=; Ncor= a 555.0 19266.0 250.0 147.0 1311.0 5.0 67.0 10.0 2110.0 2.0 2536.0 251.0 5255.0 52.0 8073.0 0 c 3318.0 2320.0 21201.0 21163.0 20221.0 21263.0 21235.0 17685.0 21.0 19607.0 3844.0 8.0 9445.0 1733.0 11606.0 0 g 17329.0 2765.0 0.0 58.0 470.0 0.0 2.0 0.0 20412.0 235.0 3252.0 21153.0 1725.0 19961.0 792.0 0 t 5687.0 0.0 17.0 57.0 328.0 1.0 2.0 3577.0 23.0 5843.0 18007.0 2.0 10267.0 2756.0 5356.0 0

MA1721.2_rc_shift6 (ZNF93_rc)
; oligos_7nt_mkv1_m4 versus MA1721.2_rc (ZNF93_rc); m=10/15; ncol2=14; w=0; offset=2; strand=R; shift=6; score=0.465067; ------CCGCTGCyGm ; cor=; Ncor= a 0 0 0 0 0 0 37.0 126.0 44.0 10.0 57.0 44.0 10.0 32.0 50.0 730.0 c 0 0 0 0 0 0 2145.0 1784.0 33.0 2328.0 576.0 42.0 2334.0 1263.0 22.0 1483.0 g 0 0 0 0 0 0 134.0 138.0 2292.0 20.0 96.0 2279.0 26.0 92.0 2278.0 114.0 t 0 0 0 0 0 0 72.0 340.0 19.0 30.0 1659.0 23.0 18.0 1001.0 38.0 61.0

MA0471.3_rc_shift3 (E2F6_rc)
; oligos_7nt_mkv1_m4 versus MA0471.3_rc (E2F6_rc); m=11/15; ncol2=8; w=-1; offset=-1; strand=R; shift=3; score=0.452851; ---TTCCCGCC----- ; cor=; Ncor= a 0 0 0 757.0 268.0 296.0 353.0 813.0 2125.0 205.0 453.0 0 0 0 0 0 c 0 0 0 5021.0 2322.0 31614.0 31973.0 30573.0 693.0 31790.0 29387.0 0 0 0 0 0 g 0 0 0 1595.0 1171.0 834.0 434.0 539.0 26424.0 837.0 1148.0 0 0 0 0 0 t 0 0 0 25725.0 29337.0 354.0 338.0 1173.0 3856.0 266.0 2110.0 0 0 0 0 0

MA0751.2_shift0 (ZIC4)
; oligos_7nt_mkv1_m4 versus MA0751.2 (ZIC4); m=12/15; ncol2=14; w=-4; offset=-4; strand=D; shift=0; score=0.439456; krCCCCCyGykGyG-- ; cor=; Ncor= a 578.0 3013.0 315.0 209.0 614.0 8.0 114.0 24.0 1095.0 24.0 1052.0 258.0 704.0 74.0 0 0 c 934.0 812.0 2870.0 2890.0 2757.0 2999.0 2985.0 2222.0 68.0 2279.0 865.0 18.0 1044.0 452.0 0 0 g 4126.0 1553.0 52.0 121.0 225.0 0.0 0.0 6.0 4795.0 252.0 1903.0 5086.0 599.0 4522.0 0 0 t 1887.0 21.0 98.0 147.0 275.0 1.0 11.0 1078.0 69.0 1017.0 3488.0 67.0 1454.0 1156.0 0 0

MA1650.2_shift9 (ZBTB14)
; oligos_7nt_mkv1_m4 versus MA1650.2 (ZBTB14); m=13/15; ncol2=8; w=0; offset=5; strand=D; shift=9; score=0.437526; ---------CCGCGCA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 335.0 41.0 93.0 68.0 132.0 56.0 4500.0 c 0 0 0 0 0 0 0 0 0 3525.0 4292.0 294.0 4078.0 305.0 4178.0 37.0 g 0 0 0 0 0 0 0 0 0 614.0 155.0 4098.0 319.0 4043.0 261.0 10.0 t 0 0 0 0 0 0 0 0 0 73.0 59.0 62.0 82.0 67.0 52.0 0.0

MA1122.2_rc_shift3 (TFDP1_rc)
; oligos_7nt_mkv1_m4 versus MA1122.2_rc (TFDP1_rc); m=14/15; ncol2=8; w=-1; offset=-1; strand=R; shift=3; score=0.435843; ---TTCCCGCs----- ; cor=; Ncor= a 0 0 0 55.0 30.0 29.0 26.0 7.0 71.0 26.0 120.0 0 0 0 0 0 c 0 0 0 137.0 98.0 1919.0 1865.0 1932.0 22.0 1862.0 940.0 0 0 0 0 0 g 0 0 0 170.0 24.0 32.0 80.0 54.0 1886.0 71.0 684.0 0 0 0 0 0 t 0 0 0 1645.0 1855.0 27.0 36.0 14.0 28.0 48.0 263.0 0 0 0 0 0

MA0865.3_shift3 (E2F8)
; oligos_7nt_mkv1_m4 versus MA0865.3 (E2F8); m=15/15; ncol2=9; w=-1; offset=-1; strand=D; shift=3; score=0.433268; ---tTCCCGCcA---- ; cor=; Ncor= a 0 0 0 155.0 405.0 78.0 12.0 44.0 39.0 1.0 104.0 1566.0 0 0 0 0 c 0 0 0 321.0 237.0 1566.0 1566.0 1566.0 7.0 1566.0 1566.0 128.0 0 0 0 0 g 0 0 0 78.0 96.0 170.0 374.0 6.0 1566.0 26.0 537.0 95.0 0 0 0 0 t 0 0 0 1012.0 1566.0 16.0 0.0 13.0 13.0 15.0 274.0 97.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv1_m5_shift1 ; 9 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv1_m5_shift1 (oligos_7nt_mkv1_m5)
; oligos_7nt_mkv1_m5; m=0 (reference); ncol1=11; shift=1; ncol=12; -ycCCCAGCAcv ; Alignment reference a 0 3 4 0 0 0 20 0 0 22 3 6 c 0 8 8 22 21 22 1 1 21 0 13 9 g 0 5 5 0 1 0 1 21 1 0 3 6 t 0 6 5 0 0 0 0 0 0 0 3 1

MA2125.1_shift1 (Zfp809)
; oligos_7nt_mkv1_m5 versus MA2125.1 (Zfp809); m=1/8; ncol2=9; w=0; offset=0; strand=D; shift=1; score=0.621377; -wTCCCAGCc-- ; cor=; Ncor= a 0 828.0 23.0 15.0 20.0 10.0 1529.0 32.0 287.0 217.0 0 0 c 0 66.0 41.0 1607.0 1610.0 1621.0 26.0 35.0 1218.0 1091.0 0 0 g 0 81.0 23.0 18.0 14.0 16.0 73.0 1572.0 99.0 115.0 0 0 t 0 690.0 1578.0 25.0 21.0 18.0 37.0 26.0 61.0 242.0 0 0

MA1629.2_shift3 (Zic2)
; oligos_7nt_mkv1_m5 versus MA1629.2 (Zic2); m=2/8; ncol2=9; w=0; offset=2; strand=D; shift=3; score=0.592486; ---CaCAGCAGG ; cor=; Ncor= a 0 0 0 1161.0 6888.0 135.0 11074.0 140.0 80.0 10625.0 192.0 96.0 c 0 0 0 9933.0 1765.0 11476.0 391.0 228.0 11272.0 118.0 133.0 204.0 g 0 0 0 585.0 829.0 188.0 186.0 11484.0 269.0 735.0 11184.0 11465.0 t 0 0 0 240.0 2437.0 120.0 268.0 67.0 298.0 441.0 410.0 154.0

MA1724.2_shift3 (Rfx6)
; oligos_7nt_mkv1_m5 versus MA1724.2 (Rfx6); m=3/8; ncol2=9; w=0; offset=2; strand=D; shift=3; score=0.590242; ---CCTAGCAAC ; cor=; Ncor= a 0 0 0 187.0 1093.0 344.0 7215.0 179.0 378.0 8085.0 7740.0 552.0 c 0 0 0 7859.0 6405.0 1066.0 64.0 102.0 7474.0 117.0 258.0 6811.0 g 0 0 0 232.0 242.0 146.0 1205.0 8215.0 359.0 132.0 339.0 552.0 t 0 0 0 272.0 810.0 6994.0 66.0 54.0 339.0 216.0 213.0 635.0

MA2330.1_shift3 (ZBTB24)
; oligos_7nt_mkv1_m5 versus MA2330.1 (ZBTB24); m=4/8; ncol2=10; w=0; offset=2; strand=D; shift=3; score=0.587672; ---cCCAGGACC ; cor=; Ncor= a 0 0 0 65.0 58.0 28.0 667.0 25.0 49.0 629.0 41.0 84.0 c 0 0 0 534.0 662.0 750.0 53.0 35.0 67.0 70.0 705.0 641.0 g 0 0 0 127.0 47.0 24.0 62.0 738.0 677.0 57.0 49.0 48.0 t 0 0 0 102.0 61.0 26.0 46.0 30.0 35.0 72.0 33.0 55.0

MA1628.2_shift5 (Zic1::Zic2)
; oligos_7nt_mkv1_m5 versus MA1628.2 (Zic1::Zic2); m=5/8; ncol2=7; w=0; offset=4; strand=D; shift=5; score=0.505948; -----CAGCAGG ; cor=; Ncor= a 0 0 0 0 0 29.0 9238.0 96.0 75.0 8950.0 11.0 46.0 c 0 0 0 0 0 9594.0 384.0 195.0 9293.0 311.0 512.0 91.0 g 0 0 0 0 0 106.0 266.0 9527.0 96.0 627.0 9279.0 9631.0 t 0 0 0 0 0 163.0 4.0 74.0 428.0 4.0 90.0 124.0

MA0697.3_shift5 (Zic3)
; oligos_7nt_mkv1_m5 versus MA0697.3 (Zic3); m=6/8; ncol2=7; w=0; offset=4; strand=D; shift=5; score=0.505716; -----CAGCAGG ; cor=; Ncor= a 0 0 0 0 0 345.0 23947.0 331.0 354.0 22980.0 393.0 347.0 c 0 0 0 0 0 25035.0 872.0 670.0 24272.0 568.0 500.0 955.0 g 0 0 0 0 0 460.0 759.0 24907.0 756.0 1768.0 24314.0 24340.0 t 0 0 0 0 0 334.0 596.0 266.0 792.0 858.0 967.0 532.0

MA1116.2_rc_shift1 (RBPJ_rc)
; oligos_7nt_mkv1_m5 versus MA1116.2_rc (RBPJ_rc); m=7/8; ncol2=6; w=0; offset=0; strand=R; shift=1; score=0.437112; -TTCCCA----- ; cor=; Ncor= a 0 4.0 29.0 78.0 60.0 1.0 2386.0 0 0 0 0 0 c 0 1.0 4.0 2309.0 2313.0 2341.0 2.0 0 0 0 0 0 g 0 15.0 0.0 8.0 20.0 25.0 12.0 0 0 0 0 0 t 0 2382.0 2369.0 7.0 9.0 35.0 2.0 0 0 0 0 0

MA1986.2_shift0 (ZNF692)
; oligos_7nt_mkv1_m5 versus MA1986.2 (ZNF692); m=8/8; ncol2=8; w=-1; offset=-1; strand=D; shift=0; score=0.425395; gGGCCCAs---- ; cor=; Ncor= a 1403.0 0.0 31.0 27.0 41.0 3.0 10535.0 852.0 0 0 0 0 c 1314.0 90.0 4.0 10689.0 10446.0 10545.0 0.0 4998.0 0 0 0 0 g 6833.0 10642.0 10684.0 7.0 241.0 176.0 210.0 3703.0 0 0 0 0 t 1195.0 13.0 26.0 22.0 17.0 21.0 0.0 1192.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv1_m3_shift0 ; 3 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv1_m3_shift0 (oligos_6nt_mkv1_m3)
; oligos_6nt_mkv1_m3; m=0 (reference); ncol1=13; shift=0; ncol=13; msAGACACACacm ; Alignment reference a 8 3 16 0 18 0 17 0 18 1 7 2 5 c 5 6 1 2 0 14 0 18 0 16 3 12 5 g 2 6 1 15 0 3 1 0 0 1 4 4 4 t 3 3 0 1 0 1 0 0 0 0 4 0 4

MA1107.3_shift3 (KLF9)
; oligos_6nt_mkv1_m3 versus MA1107.3 (KLF9); m=1/2; ncol2=11; w=0; offset=3; strand=D; shift=3; score=0.527755; ---gCCACACCCA ; cor=; Ncor= a 0 0 0 2862.0 4664.0 287.0 21899.0 221.0 19187.0 224.0 2428.0 146.0 18837.0 c 0 0 0 4342.0 17839.0 24709.0 2559.0 24863.0 1070.0 24365.0 22117.0 24682.0 4339.0 g 0 0 0 16852.0 1660.0 291.0 708.0 353.0 4340.0 735.0 605.0 205.0 852.0 t 0 0 0 1523.0 1416.0 292.0 413.0 142.0 982.0 255.0 429.0 546.0 1551.0

MA1153.2_rc_shift0 (Smad4_rc)
; oligos_6nt_mkv1_m3 versus MA1153.2_rc (Smad4_rc); m=2/2; ncol2=7; w=0; offset=0; strand=R; shift=0; score=0.438205; CyAGACr------ ; cor=; Ncor= a 0.0 0.0 1000.0 0.0 1000.0 0.0 581.0 0 0 0 0 0 0 c 1000.0 404.0 0.0 0.0 0.0 1000.0 81.0 0 0 0 0 0 0 g 0.0 0.0 0.0 1000.0 0.0 0.0 250.0 0 0 0 0 0 0 t 0.0 596.0 0.0 0.0 0.0 0.0 88.0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv1_m2_shift0 ; 4 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_7nt_mkv1_m2_shift0 (oligos_7nt_mkv1_m2)
; oligos_7nt_mkv1_m2; m=0 (reference); ncol1=12; shift=0; ncol=12; msAGACACACaC ; Alignment reference a 10 4 20 1 21 0 21 0 22 1 10 2 c 6 7 1 3 0 18 0 22 0 19 4 15 g 3 8 1 17 1 3 1 0 0 2 4 5 t 3 3 0 1 0 1 0 0 0 0 4 0

MA1107.3_shift3 (KLF9)
; oligos_7nt_mkv1_m2 versus MA1107.3 (KLF9); m=1/3; ncol2=11; w=0; offset=3; strand=D; shift=3; score=0.49671; ---gCCACACCC ; cor=; Ncor= a 0 0 0 2862.0 4664.0 287.0 21899.0 221.0 19187.0 224.0 2428.0 146.0 c 0 0 0 4342.0 17839.0 24709.0 2559.0 24863.0 1070.0 24365.0 22117.0 24682.0 g 0 0 0 16852.0 1660.0 291.0 708.0 353.0 4340.0 735.0 605.0 205.0 t 0 0 0 1523.0 1416.0 292.0 413.0 142.0 982.0 255.0 429.0 546.0

MA1153.2_rc_shift0 (Smad4_rc)
; oligos_7nt_mkv1_m2 versus MA1153.2_rc (Smad4_rc); m=2/3; ncol2=7; w=0; offset=0; strand=R; shift=0; score=0.467577; CyAGACr----- ; cor=; Ncor= a 0.0 0.0 1000.0 0.0 1000.0 0.0 581.0 0 0 0 0 0 c 1000.0 404.0 0.0 0.0 0.0 1000.0 81.0 0 0 0 0 0 g 0.0 0.0 0.0 1000.0 0.0 0.0 250.0 0 0 0 0 0 t 0.0 596.0 0.0 0.0 0.0 0.0 88.0 0 0 0 0 0

MA1964.2_shift0 (SMAD2)
; oligos_7nt_mkv1_m2 versus MA1964.2 (SMAD2); m=3/3; ncol2=6; w=0; offset=0; strand=D; shift=0; score=0.413237; CCAGAC------ ; cor=; Ncor= a 42.0 6.0 3447.0 7.0 3747.0 1.0 0 0 0 0 0 0 c 3610.0 3484.0 149.0 30.0 0.0 3757.0 0 0 0 0 0 0 g 86.0 171.0 154.0 3703.0 0.0 0.0 0 0 0 0 0 0 t 20.0 97.0 8.0 18.0 11.0 0.0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv1_m1_shift1 (oligos_7nt_mkv1_m1)				; oligos_7nt_mkv1_m1; m=0 (reference); ncol1=13; shift=1; ncol=14; -csGCCCCGCCCyv ; Alignment reference a 0 10 7 1 2 0 1 2 3 2 1 0 5 15 c 0 28 18 5 50 56 53 53 1 51 55 50 26 20 g 0 8 27 47 3 0 1 0 50 3 1 3 10 18 t 0 11 5 4 2 1 2 2 3 1 0 4 16 4
MA1961.2_rc_shift3 (PATZ1_rc)				; oligos_7nt_mkv1_m1 versus MA1961.2_rc (PATZ1_rc); m=1/31; ncol2=11; w=0; offset=2; strand=R; shift=3; score=0.77469; ---sCCCCkCCCCs ; cor=; Ncor= a 0 0 0 34.0 1.0 1.0 1.0 1.0 155.0 1.0 1.0 1.0 24.0 44.0 c 0 0 0 523.0 944.0 964.0 957.0 997.0 1.0 997.0 997.0 727.0 680.0 543.0 g 0 0 0 392.0 1.0 34.0 41.0 1.0 489.0 1.0 1.0 78.0 228.0 288.0 t 0 0 0 51.0 54.0 1.0 1.0 1.0 355.0 1.0 1.0 195.0 68.0 125.0
MA0599.1_shift3 (KLF5)				; oligos_7nt_mkv1_m1 versus MA0599.1 (KLF5); m=2/31; ncol2=10; w=0; offset=2; strand=D; shift=3; score=0.713773; ---gCCMCrCCCh- ; cor=; Ncor= a 0 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 c 0 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 g 0 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 t 0 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0
MA0746.3_shift3 (SP3)				; oligos_7nt_mkv1_m1 versus MA0746.3 (SP3); m=3/31; ncol2=11; w=0; offset=2; strand=D; shift=3; score=0.708476; ---rCCACGCCCmC ; cor=; Ncor= a 0 0 0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 c 0 0 0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 g 0 0 0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 t 0 0 0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0
MA0741.1_shift3 (KLF16)				; oligos_7nt_mkv1_m1 versus MA0741.1 (KLF16); m=4/31; ncol2=11; w=0; offset=2; strand=D; shift=3; score=0.692232; ---gmCMCgCCCMC ; cor=; Ncor= a 0 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 c 0 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 g 0 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 t 0 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0
MA0742.2_rc_shift4 (KLF12_rc)				; oligos_7nt_mkv1_m1 versus MA0742.2_rc (KLF12_rc); m=5/31; ncol2=9; w=0; offset=3; strand=R; shift=4; score=0.675347; ----CCCCGCCCC- ; cor=; Ncor= a 0 0 0 0 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 0 c 0 0 0 0 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 0 g 0 0 0 0 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 0 t 0 0 0 0 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948 0
MA0516.3_rc_shift4 (SP2_rc)				; oligos_7nt_mkv1_m1 versus MA0516.3_rc (SP2_rc); m=6/31; ncol2=9; w=0; offset=3; strand=R; shift=4; score=0.669652; ----cCCCGCCCC- ; cor=; Ncor= a 0 0 0 0 18.3284 0.733138 24.1935 0.733138 0.733138 0.733138 0.733138 0.733138 79.912 0 c 0 0 0 0 610.704 877.566 974.34 997.801 0.733138 997.801 997.801 830.645 766.129 0 g 0 0 0 0 164.956 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 0.733138 0 t 0 0 0 0 206.012 120.968 0.733138 0.733138 112.17 0.733138 0.733138 167.889 153.226 0
MA1511.2_rc_shift4 (KLF10_rc)				; oligos_7nt_mkv1_m1 versus MA1511.2_rc (KLF10_rc); m=7/31; ncol2=9; w=0; offset=3; strand=R; shift=4; score=0.665934; ----CCMCGCCCC- ; cor=; Ncor= a 0 0 0 0 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 0 c 0 0 0 0 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 0 g 0 0 0 0 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 0 t 0 0 0 0 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427 0
MA0685.2_rc_shift4 (SP4_rc)				; oligos_7nt_mkv1_m1 versus MA0685.2_rc (SP4_rc); m=8/31; ncol2=9; w=0; offset=3; strand=R; shift=4; score=0.663334; ----CyCCKCCCc- ; cor=; Ncor= a 0 0 0 0 0.686813 50.1374 77.6099 0.686813 0.686813 0.686813 0.686813 0.686813 195.742 0 c 0 0 0 0 997.94 660.027 921.016 997.94 0.686813 997.94 997.94 997.94 654.533 0 g 0 0 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 t 0 0 0 0 0.686813 289.148 0.686813 0.686813 275.412 0.686813 0.686813 0.686813 149.038 0
MA0740.2_rc_shift4 (KLF14_rc)				; oligos_7nt_mkv1_m1 versus MA0740.2_rc (KLF14_rc); m=9/31; ncol2=9; w=0; offset=3; strand=R; shift=4; score=0.662486; ----CCMCGCCCm- ; cor=; Ncor= a 0 0 0 0 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 0 c 0 0 0 0 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 0 g 0 0 0 0 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 0 t 0 0 0 0 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158 0
MA1564.2_shift4 (SP9)				; oligos_7nt_mkv1_m1 versus MA1564.2 (SP9); m=10/31; ncol2=10; w=0; offset=3; strand=D; shift=4; score=0.657019; ----cCmCGCCCmc ; cor=; Ncor= a 0 0 0 0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 c 0 0 0 0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 g 0 0 0 0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 t 0 0 0 0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0
MA1653.2_shift4 (ZNF148)				; oligos_7nt_mkv1_m1 versus MA1653.2 (ZNF148); m=11/31; ncol2=10; w=0; offset=3; strand=D; shift=4; score=0.650517; ----CCCCTCCCcc ; cor=; Ncor= a 0 0 0 0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 c 0 0 0 0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 g 0 0 0 0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 t 0 0 0 0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0
MA0079.5_rc_shift4 (SP1_rc)				; oligos_7nt_mkv1_m1 versus MA0079.5_rc (SP1_rc); m=12/31; ncol2=9; w=0; offset=3; strand=R; shift=4; score=0.647842; ----CyCCKCCCC- ; cor=; Ncor= a 0 0 0 0 1.05485 34.8101 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 47.4684 0 c 0 0 0 0 836.498 659.283 912.447 996.835 1.05485 996.835 996.835 996.835 950.422 0 g 0 0 0 0 1.05485 51.6878 85.443 1.05485 731.013 1.05485 1.05485 1.05485 1.05485 0 t 0 0 0 0 161.392 254.219 1.05485 1.05485 266.878 1.05485 1.05485 1.05485 1.05485 0
MA1630.3_rc_shift4 (ZNF281_rc)				; oligos_7nt_mkv1_m1 versus MA1630.3_rc (ZNF281_rc); m=13/31; ncol2=10; w=0; offset=3; strand=R; shift=4; score=0.636719; ----CCCCTCCCCC ; cor=; Ncor= a 0 0 0 0 7.0 18.0 1.0 105.0 96.0 1.0 1.0 1.0 1.0 1.0 c 0 0 0 0 920.0 940.0 998.0 772.0 1.0 998.0 998.0 963.0 998.0 998.0 g 0 0 0 0 27.0 1.0 1.0 1.0 183.0 1.0 1.0 1.0 1.0 1.0 t 0 0 0 0 47.0 41.0 1.0 122.0 720.0 1.0 1.0 35.0 1.0 1.0
MA1516.2_shift2 (KLF3)				; oligos_7nt_mkv1_m1 versus MA1516.2 (KLF3); m=14/31; ncol2=10; w=0; offset=1; strand=D; shift=2; score=0.631385; --grCCrCGCCC-- ; cor=; Ncor= a 0 0 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 0 0 c 0 0 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 0 0 g 0 0 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 0 0 t 0 0 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 0 0
MA1512.2_shift4 (KLF11)				; oligos_7nt_mkv1_m1 versus MA1512.2 (KLF11); m=15/31; ncol2=10; w=0; offset=3; strand=D; shift=4; score=0.604526; ----cCACGCCCmC ; cor=; Ncor= a 0 0 0 0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 c 0 0 0 0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 g 0 0 0 0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 t 0 0 0 0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0
MA1513.2_shift4 (KLF15)				; oligos_7nt_mkv1_m1 versus MA1513.2 (KLF15); m=16/31; ncol2=8; w=0; offset=3; strand=D; shift=4; score=0.603973; ----cCCCGCCC-- ; cor=; Ncor= a 0 0 0 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 0 c 0 0 0 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 0 g 0 0 0 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 0 t 0 0 0 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0 0
MA1959.2_rc_shift4 (KLF7_rc)				; oligos_7nt_mkv1_m1 versus MA1959.2_rc (KLF7_rc); m=17/31; ncol2=8; w=0; offset=3; strand=R; shift=4; score=0.59256; ----CcMCGCCC-- ; cor=; Ncor= a 0 0 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 0 c 0 0 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 0 g 0 0 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 0 t 0 0 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0 0
MA0753.3_shift4 (ZNF740)				; oligos_7nt_mkv1_m1 versus MA0753.3 (ZNF740); m=18/31; ncol2=10; w=0; offset=3; strand=D; shift=4; score=0.592226; ----CCCCCCCCAc ; cor=; Ncor= a 0 0 0 0 60.0 110.0 18.0 22.0 23.0 10.0 2.0 115.0 1055.0 207.0 c 0 0 0 0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 239.0 1055.0 g 0 0 0 0 37.0 14.0 4.0 7.0 3.0 7.0 3.0 6.0 68.0 54.0 t 0 0 0 0 49.0 1.0 16.0 15.0 11.0 6.0 3.0 4.0 134.0 246.0
MA2328.1_shift0 (ZBED4)				; oligos_7nt_mkv1_m1 versus MA2328.1 (ZBED4); m=19/31; ncol2=10; w=-1; offset=-1; strand=D; shift=0; score=0.586544; CcCGCyCCGC---- ; cor=; Ncor= a 41.0 26.0 29.0 17.0 6.0 11.0 14.0 12.0 22.0 19.0 0 0 0 0 c 479.0 419.0 549.0 14.0 621.0 391.0 598.0 604.0 19.0 589.0 0 0 0 0 g 80.0 65.0 62.0 608.0 26.0 28.0 34.0 23.0 580.0 35.0 0 0 0 0 t 60.0 150.0 20.0 21.0 7.0 230.0 14.0 21.0 39.0 17.0 0 0 0 0
MA0493.3_rc_shift4 (KLF1_rc)				; oligos_7nt_mkv1_m1 versus MA0493.3_rc (KLF1_rc); m=20/31; ncol2=8; w=0; offset=3; strand=R; shift=4; score=0.586312; ----CCmCrCCC-- ; cor=; Ncor= a 0 0 0 0 1.0 21.0 324.0 1.0 346.0 1.0 1.0 1.0 0 0 c 0 0 0 0 998.0 896.0 675.0 998.0 1.0 998.0 998.0 998.0 0 0 g 0 0 0 0 1.0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 0 0 t 0 0 0 0 1.0 82.0 1.0 1.0 125.0 1.0 1.0 1.0 0 0
MA0747.2_shift4 (SP8)				; oligos_7nt_mkv1_m1 versus MA0747.2 (SP8); m=21/31; ncol2=11; w=0; offset=3; strand=D; shift=4; score=0.568042; ----mCACgCCCmC ; cor=; Ncor= a 0 0 0 0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 13.0 c 0 0 0 0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 167.0 g 0 0 0 0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 21.0 t 0 0 0 0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0 39.0
MA1517.2_shift4 (KLF6)				; oligos_7nt_mkv1_m1 versus MA1517.2 (KLF6); m=22/31; ncol2=9; w=0; offset=3; strand=D; shift=4; score=0.552877; ----cCACRCCCm- ; cor=; Ncor= a 0 0 0 0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 0 c 0 0 0 0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 0 g 0 0 0 0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 0 t 0 0 0 0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0 0
MA1515.2_shift4 (KLF2)				; oligos_7nt_mkv1_m1 versus MA1515.2 (KLF2); m=23/31; ncol2=8; w=0; offset=3; strand=D; shift=4; score=0.548037; ----CCmCrCCC-- ; cor=; Ncor= a 0 0 0 0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 0 0 c 0 0 0 0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 0 0 g 0 0 0 0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 0 0 t 0 0 0 0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 0 0
MA0039.5_shift4 (KLF4)				; oligos_7nt_mkv1_m1 versus MA0039.5 (KLF4); m=24/31; ncol2=8; w=0; offset=3; strand=D; shift=4; score=0.533589; ----CCCCACCC-- ; cor=; Ncor= a 0 0 0 0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 0 0 c 0 0 0 0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 0 0 g 0 0 0 0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 0 0 t 0 0 0 0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 0 0
MA1522.2_shift4 (MAZ)				; oligos_7nt_mkv1_m1 versus MA1522.2 (MAZ); m=25/31; ncol2=8; w=0; offset=3; strand=D; shift=4; score=0.507034; ----CCCCTCCc-- ; cor=; Ncor= a 0 0 0 0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 0 0 c 0 0 0 0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 0 0 g 0 0 0 0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 0 0 t 0 0 0 0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 0 0
MA0657.2_shift2 (KLF13)				; oligos_7nt_mkv1_m1 versus MA0657.2 (KLF13); m=26/31; ncol2=17; w=0; offset=1; strand=D; shift=2; score=0.481261; --tRmCACGCCCCY ; cor=; Ncor= a 0 0 733.0 1891.0 496.0 75.0 2384.0 0.0 24.0 0.0 4.0 1.0 509.0 3.0 c 0 0 46.0 0.0 923.0 924.0 0.0 1353.0 2.0 1596.0 1469.0 1760.0 1766.0 638.0 g 0 0 796.0 4630.0 58.0 2.0 11.0 7.0 3028.0 0.0 0.0 0.0 0.0 3.0 t 0 0 1766.0 59.0 102.0 61.0 0.0 3.0 9.0 7.0 0.0 16.0 10.0 1403.0
MA1615.2_rc_shift1 (Plagl1_rc)				; oligos_7nt_mkv1_m1 versus MA1615.2_rc (Plagl1_rc); m=27/31; ncol2=8; w=0; offset=0; strand=R; shift=1; score=0.467223; -TGGCCCCa----- ; cor=; Ncor= a 0 371.0 398.0 321.0 142.0 183.0 323.0 118.0 9425.0 0 0 0 0 0 c 0 1032.0 422.0 313.0 13495.0 13517.0 12261.0 13595.0 1338.0 0 0 0 0 0 g 0 686.0 13152.0 12737.0 336.0 266.0 356.0 243.0 1471.0 0 0 0 0 0 t 0 12064.0 181.0 782.0 180.0 187.0 1213.0 197.0 1919.0 0 0 0 0 0
MA0471.3_rc_shift3 (E2F6_rc)				; oligos_7nt_mkv1_m1 versus MA0471.3_rc (E2F6_rc); m=28/31; ncol2=8; w=0; offset=2; strand=R; shift=3; score=0.446819; ---TTCCCGCC--- ; cor=; Ncor= a 0 0 0 757.0 268.0 296.0 353.0 813.0 2125.0 205.0 453.0 0 0 0 c 0 0 0 5021.0 2322.0 31614.0 31973.0 30573.0 693.0 31790.0 29387.0 0 0 0 g 0 0 0 1595.0 1171.0 834.0 434.0 539.0 26424.0 837.0 1148.0 0 0 0 t 0 0 0 25725.0 29337.0 354.0 338.0 1173.0 3856.0 266.0 2110.0 0 0 0
MA1548.2_shift1 (PLAGL2)				; oligos_7nt_mkv1_m1 versus MA1548.2 (PLAGL2); m=29/31; ncol2=8; w=0; offset=0; strand=D; shift=1; score=0.440867; -GGGCCCCC----- ; cor=; Ncor= a 0 39.0 0.0 0.0 0.0 0.0 0.0 0.0 90.0 0 0 0 0 0 c 0 39.0 0.0 151.0 799.0 999.0 999.0 925.0 684.0 0 0 0 0 0 g 0 813.0 999.0 848.0 200.0 0.0 0.0 0.0 25.0 0 0 0 0 0 t 0 107.0 0.0 0.0 0.0 0.0 0.0 74.0 198.0 0 0 0 0 0
MA0162.5_shift6 (EGR1)				; oligos_7nt_mkv1_m1 versus MA0162.5 (EGR1); m=30/31; ncol2=10; w=0; offset=5; strand=D; shift=6; score=0.41133; ------mCGCCCAC ; cor=; Ncor= a 0 0 0 0 0 0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 c 0 0 0 0 0 0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 g 0 0 0 0 0 0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 t 0 0 0 0 0 0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0
MA0732.2_shift6 (EGR3)				; oligos_7nt_mkv1_m1 versus MA0732.2 (EGR3); m=31/31; ncol2=11; w=0; offset=5; strand=D; shift=6; score=0.400628; ------mCGCCCMC ; cor=; Ncor= a 0 0 0 0 0 0 1031.0 2.0 66.0 0.0 0.0 0.0 1159.0 0.0 c 0 0 0 0 0 0 701.0 1855.0 32.0 1856.0 1858.0 1823.0 455.0 1875.0 g 0 0 0 0 0 0 10.0 0.0 2158.0 2.0 0.0 7.0 11.0 7.0 t 0 0 0 0 0 0 20.0 13.0 36.0 0.0 10.0 80.0 4.0 2.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv1_m4_shift4 (oligos_6nt_mkv1_m4)				; oligos_6nt_mkv1_m4; m=0 (reference); ncol1=10; shift=4; ncol=14; ----csAGGCTGgs ; Alignment reference a 0 0 0 0 6 9 37 0 0 0 0 0 8 2 c 0 0 0 0 20 17 0 2 0 37 0 0 9 10 g 0 0 0 0 6 10 0 35 37 0 0 36 16 20 t 0 0 0 0 5 1 0 0 0 0 37 1 4 5
MA2341.1_rc_shift6 (FEZF2_rc)				; oligos_6nt_mkv1_m4 versus MA2341.1_rc (FEZF2_rc); m=1/8; ncol2=8; w=0; offset=2; strand=R; shift=6; score=0.766204; ------AGGCTGGG ; cor=; Ncor= a 0 0 0 0 0 0 233.0 9.0 5.0 0.0 5.0 3.0 45.0 36.0 c 0 0 0 0 0 0 8.0 2.0 28.0 251.0 14.0 0.0 9.0 10.0 g 0 0 0 0 0 0 10.0 247.0 224.0 8.0 15.0 258.0 206.0 202.0 t 0 0 0 0 0 0 14.0 7.0 8.0 6.0 231.0 4.0 5.0 17.0
MA2121.1_shift2 (ZNF213)				; oligos_6nt_mkv1_m4 versus MA2121.1 (ZNF213); m=2/8; ncol2=12; w=-2; offset=-2; strand=D; shift=2; score=0.709605; --gCCCAGGCwGsr ; cor=; Ncor= a 0 0 119.0 26.0 18.0 15.0 577.0 10.0 12.0 16.0 229.0 42.0 61.0 216.0 c 0 0 89.0 581.0 603.0 630.0 34.0 13.0 25.0 642.0 97.0 76.0 319.0 86.0 g 0 0 403.0 52.0 34.0 34.0 54.0 661.0 639.0 22.0 124.0 519.0 260.0 330.0 t 0 0 76.0 28.0 32.0 8.0 22.0 3.0 11.0 7.0 237.0 50.0 47.0 55.0
MA2099.1_rc_shift4 (ZNF770_rc)				; oligos_6nt_mkv1_m4 versus MA2099.1_rc (ZNF770_rc); m=3/8; ncol2=8; w=0; offset=0; strand=R; shift=4; score=0.59786; ----kGAGGCyG-- ; cor=; Ncor= a 0 0 0 0 724.0 56.0 13889.0 65.0 156.0 126.0 387.0 1052.0 0 0 c 0 0 0 0 485.0 86.0 215.0 133.0 681.0 13947.0 9119.0 374.0 0 0 g 0 0 0 0 3865.0 14154.0 140.0 14096.0 13393.0 79.0 857.0 12613.0 0 0 t 0 0 0 0 9257.0 35.0 87.0 37.0 101.0 179.0 3968.0 292.0 0 0
MA2125.1_rc_shift7 (Zfp809_rc)				; oligos_6nt_mkv1_m4 versus MA2125.1_rc (Zfp809_rc); m=4/8; ncol2=9; w=0; offset=3; strand=R; shift=7; score=0.514538; -------gGCTGGG ; cor=; Ncor= a 0 0 0 0 0 0 0 242.0 61.0 26.0 37.0 18.0 21.0 25.0 c 0 0 0 0 0 0 0 115.0 99.0 1572.0 73.0 16.0 14.0 18.0 g 0 0 0 0 0 0 0 1091.0 1218.0 35.0 26.0 1621.0 1610.0 1607.0 t 0 0 0 0 0 0 0 217.0 287.0 32.0 1529.0 10.0 20.0 15.0
MA1973.2_shift3 (ZKSCAN3)				; oligos_6nt_mkv1_m4 versus MA1973.2 (ZKSCAN3); m=5/8; ncol2=14; w=-1; offset=-1; strand=D; shift=3; score=0.514229; ---CCcAGGCTAGC ; cor=; Ncor= a 0 0 0 23.0 17.0 36.0 188.0 6.0 0.0 5.0 2.0 197.0 3.0 36.0 c 0 0 0 149.0 152.0 115.0 2.0 1.0 5.0 183.0 6.0 3.0 6.0 168.0 g 0 0 0 17.0 15.0 38.0 19.0 201.0 203.0 4.0 2.0 8.0 188.0 4.0 t 0 0 0 21.0 26.0 21.0 1.0 2.0 2.0 18.0 200.0 2.0 13.0 2.0
MA1655.2_rc_shift7 (ZNF341_rc)				; oligos_6nt_mkv1_m4 versus MA1655.2_rc (ZNF341_rc); m=6/8; ncol2=8; w=0; offset=3; strand=R; shift=7; score=0.46591; -------gGCTGTT ; cor=; Ncor= a 0 0 0 0 0 0 0 2411.0 228.0 229.0 234.0 581.0 241.0 186.0 c 0 0 0 0 0 0 0 2289.0 270.0 17972.0 468.0 1033.0 576.0 513.0 g 0 0 0 0 0 0 0 10946.0 18003.0 359.0 399.0 16813.0 211.0 955.0 t 0 0 0 0 0 0 0 3082.0 227.0 168.0 17627.0 301.0 17700.0 17074.0
MA1596.1_rc_shift0 (ZNF460_rc)				; oligos_6nt_mkv1_m4 versus MA1596.1_rc (ZNF460_rc); m=7/8; ncol2=16; w=-4; offset=-4; strand=R; shift=0; score=0.465279; CyyGGGAGGCkGAG ; cor=; Ncor= a 64.0 29.0 56.0 40.0 9.0 10.0 1570.0 6.0 11.0 35.0 85.0 29.0 1284.0 66.0 c 1147.0 421.0 930.0 27.0 15.0 15.0 17.0 9.0 7.0 1493.0 181.0 47.0 83.0 67.0 g 158.0 175.0 110.0 1533.0 1583.0 1584.0 12.0 1596.0 1588.0 23.0 495.0 1519.0 218.0 1460.0 t 243.0 987.0 516.0 12.0 5.0 3.0 13.0 1.0 6.0 61.0 851.0 17.0 27.0 19.0
MA0812.2_shift1 (TFAP2B)				; oligos_6nt_mkv1_m4 versus MA0812.2 (TFAP2B); m=8/8; ncol2=9; w=-3; offset=-3; strand=D; shift=1; score=0.428088; -GCCysAGGC---- ; cor=; Ncor= a 0 36.0 0.0 0.0 16.0 576.0 3480.0 235.0 6.0 47.0 0 0 0 0 c 0 609.0 4549.0 4549.0 1204.0 2126.0 608.0 4.0 10.0 4250.0 0 0 0 0 g 0 3940.0 4.0 1.0 612.0 1498.0 446.0 4549.0 4549.0 299.0 0 0 0 0 t 0 30.0 0.0 158.0 2716.0 348.0 14.0 2.0 1.0 25.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv1_m1_shift0 (oligos_6nt_mkv1_m1)				; oligos_6nt_mkv1_m1; m=0 (reference); ncol1=14; shift=0; ncol=14; yskCCCCGCCCsss ; Alignment reference a 8 8 3 0 0 0 0 1 3 1 1 4 10 8 c 20 14 11 42 46 44 44 0 42 43 43 14 18 23 g 7 20 21 3 0 2 2 45 2 2 3 19 14 13 t 12 5 12 2 1 1 1 1 0 1 0 10 5 3
MA1961.2_rc_shift2 (PATZ1_rc)				; oligos_6nt_mkv1_m1 versus MA1961.2_rc (PATZ1_rc); m=1/31; ncol2=11; w=0; offset=2; strand=R; shift=2; score=0.72153; --sCCCCkCCCCs- ; cor=; Ncor= a 0 0 34.0 1.0 1.0 1.0 1.0 155.0 1.0 1.0 1.0 24.0 44.0 0 c 0 0 523.0 944.0 964.0 957.0 997.0 1.0 997.0 997.0 727.0 680.0 543.0 0 g 0 0 392.0 1.0 34.0 41.0 1.0 489.0 1.0 1.0 78.0 228.0 288.0 0 t 0 0 51.0 54.0 1.0 1.0 1.0 355.0 1.0 1.0 195.0 68.0 125.0 0
MA0599.1_shift2 (KLF5)				; oligos_6nt_mkv1_m1 versus MA0599.1 (KLF5); m=2/31; ncol2=10; w=0; offset=2; strand=D; shift=2; score=0.64479; --gCCMCrCCCh-- ; cor=; Ncor= a 0 0 1429.0 0.0 0.0 3477.0 0.0 5051.0 0.0 0.0 0.0 3915.0 0 0 c 0 0 2023.0 11900.0 12008.0 9569.0 13611.0 0.0 13611.0 13611.0 13135.0 5595.0 0 0 g 0 0 7572.0 0.0 0.0 0.0 0.0 5182.0 0.0 0.0 0.0 0.0 0 0 t 0 0 2587.0 1711.0 1603.0 565.0 0.0 3378.0 0.0 0.0 476.0 4101.0 0 0
MA0746.3_shift2 (SP3)				; oligos_6nt_mkv1_m1 versus MA0746.3 (SP3); m=3/31; ncol2=11; w=0; offset=2; strand=D; shift=2; score=0.64382; --rCCACGCCCmC- ; cor=; Ncor= a 0 0 2146.0 664.0 160.0 5253.0 6.0 465.0 0.0 0.0 2.0 3430.0 556.0 0 c 0 0 531.0 6591.0 6591.0 1338.0 6591.0 0.0 6591.0 6591.0 6591.0 3160.0 5116.0 0 g 0 0 4445.0 226.0 54.0 2.0 0.0 6591.0 0.0 0.0 2.0 39.0 297.0 0 t 0 0 421.0 345.0 202.0 11.0 12.0 504.0 0.0 9.0 718.0 552.0 1475.0 0
MA0741.1_shift2 (KLF16)				; oligos_6nt_mkv1_m1 versus MA0741.1 (KLF16); m=4/31; ncol2=11; w=0; offset=2; strand=D; shift=2; score=0.622579; --gmCMCgCCCMC- ; cor=; Ncor= a 0 0 666.0 901.0 62.0 1150.0 66.0 497.0 8.0 2.0 16.0 437.0 32.0 0 c 0 0 535.0 1612.0 1612.0 461.0 1612.0 173.0 1612.0 1612.0 1612.0 1175.0 1612.0 0 g 0 0 1612.0 77.0 6.0 32.0 17.0 1612.0 0.0 8.0 3.0 19.0 23.0 0 t 0 0 240.0 116.0 45.0 0.0 19.0 403.0 0.0 0.0 97.0 40.0 370.0 0
MA0742.2_rc_shift3 (KLF12_rc)				; oligos_6nt_mkv1_m1 versus MA0742.2_rc (KLF12_rc); m=5/31; ncol2=9; w=0; offset=3; strand=R; shift=3; score=0.612492; ---CCCCGCCCC-- ; cor=; Ncor= a 0 0 0 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 0 0 c 0 0 0 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 0 0 g 0 0 0 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 0 0 t 0 0 0 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948 0 0
MA0516.3_rc_shift3 (SP2_rc)				; oligos_6nt_mkv1_m1 versus MA0516.3_rc (SP2_rc); m=6/31; ncol2=9; w=0; offset=3; strand=R; shift=3; score=0.603578; ---cCCCGCCCC-- ; cor=; Ncor= a 0 0 0 18.3284 0.733138 24.1935 0.733138 0.733138 0.733138 0.733138 0.733138 79.912 0 0 c 0 0 0 610.704 877.566 974.34 997.801 0.733138 997.801 997.801 830.645 766.129 0 0 g 0 0 0 164.956 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 0.733138 0 0 t 0 0 0 206.012 120.968 0.733138 0.733138 112.17 0.733138 0.733138 167.889 153.226 0 0
MA0740.2_rc_shift3 (KLF14_rc)				; oligos_6nt_mkv1_m1 versus MA0740.2_rc (KLF14_rc); m=7/31; ncol2=9; w=0; offset=3; strand=R; shift=3; score=0.601575; ---CCMCGCCCm-- ; cor=; Ncor= a 0 0 0 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 0 0 c 0 0 0 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 0 0 g 0 0 0 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 0 0 t 0 0 0 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158 0 0
MA0685.2_rc_shift3 (SP4_rc)				; oligos_6nt_mkv1_m1 versus MA0685.2_rc (SP4_rc); m=8/31; ncol2=9; w=0; offset=3; strand=R; shift=3; score=0.600611; ---CyCCKCCCc-- ; cor=; Ncor= a 0 0 0 0.686813 50.1374 77.6099 0.686813 0.686813 0.686813 0.686813 0.686813 195.742 0 0 c 0 0 0 997.94 660.027 921.016 997.94 0.686813 997.94 997.94 997.94 654.533 0 0 g 0 0 0 0.686813 0.686813 0.686813 0.686813 723.214 0.686813 0.686813 0.686813 0.686813 0 0 t 0 0 0 0.686813 289.148 0.686813 0.686813 275.412 0.686813 0.686813 0.686813 149.038 0 0
MA1511.2_rc_shift3 (KLF10_rc)				; oligos_6nt_mkv1_m1 versus MA1511.2_rc (KLF10_rc); m=9/31; ncol2=9; w=0; offset=3; strand=R; shift=3; score=0.60052; ---CCMCGCCCC-- ; cor=; Ncor= a 0 0 0 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 0 0 c 0 0 0 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 0 0 g 0 0 0 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 0 0 t 0 0 0 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427 0 0
MA1564.2_shift3 (SP9)				; oligos_6nt_mkv1_m1 versus MA1564.2 (SP9); m=10/31; ncol2=10; w=0; offset=3; strand=D; shift=3; score=0.598853; ---cCmCGCCCmc- ; cor=; Ncor= a 0 0 0 566.0 321.0 2451.0 2.0 211.0 22.0 0.0 39.0 1192.0 188.0 0 c 0 0 0 2451.0 2451.0 1127.0 2451.0 200.0 2451.0 2451.0 2451.0 1259.0 1863.0 0 g 0 0 0 309.0 113.0 56.0 17.0 2451.0 0.0 0.0 24.0 38.0 191.0 0 t 0 0 0 518.0 284.0 96.0 9.0 173.0 14.0 30.0 412.0 353.0 588.0 0
MA0747.2_shift3 (SP8)				; oligos_6nt_mkv1_m1 versus MA0747.2 (SP8); m=11/31; ncol2=11; w=0; offset=3; strand=D; shift=3; score=0.591059; ---mCACgCCCmCy ; cor=; Ncor= a 0 0 0 54.0 25.0 133.0 7.0 25.0 5.0 2.0 0.0 90.0 13.0 31.0 c 0 0 0 113.0 167.0 33.0 167.0 37.0 167.0 167.0 167.0 77.0 167.0 52.0 g 0 0 0 0.0 0.0 1.0 1.0 167.0 6.0 3.0 4.0 6.0 21.0 1.0 t 0 0 0 4.0 13.0 2.0 5.0 39.0 2.0 0.0 15.0 3.0 39.0 82.0
MA1516.2_shift1 (KLF3)				; oligos_6nt_mkv1_m1 versus MA1516.2 (KLF3); m=12/31; ncol2=10; w=0; offset=1; strand=D; shift=1; score=0.588635; -grCCrCGCCC--- ; cor=; Ncor= a 0 7717.0 24771.0 1442.0 298.0 26757.0 2261.0 4245.0 202.0 83.0 77.0 0 0 0 c 0 2655.0 615.0 43259.0 43259.0 707.0 43259.0 334.0 43259.0 43259.0 43259.0 0 0 0 g 0 26568.0 18489.0 1954.0 248.0 16503.0 21.0 43259.0 31.0 29.0 48.0 0 0 0 t 0 6319.0 207.0 705.0 335.0 419.0 1409.0 1212.0 0.0 0.0 1218.0 0 0 0
MA1653.2_shift3 (ZNF148)				; oligos_6nt_mkv1_m1 versus MA1653.2 (ZNF148); m=13/31; ncol2=10; w=0; offset=3; strand=D; shift=3; score=0.586619; ---CCCCTCCCcc- ; cor=; Ncor= a 0 0 0 82.0 132.0 136.0 89.0 133.0 66.0 352.0 442.0 846.0 841.0 0 c 0 0 0 10799.0 10396.0 10526.0 10833.0 14.0 10954.0 9922.0 9283.0 7239.0 7114.0 0 g 0 0 0 205.0 471.0 401.0 211.0 1012.0 112.0 460.0 392.0 1924.0 2064.0 0 t 0 0 0 113.0 200.0 136.0 66.0 10040.0 67.0 465.0 1082.0 1190.0 1180.0 0
MA0079.5_rc_shift3 (SP1_rc)				; oligos_6nt_mkv1_m1 versus MA0079.5_rc (SP1_rc); m=14/31; ncol2=9; w=0; offset=3; strand=R; shift=3; score=0.582296; ---CyCCKCCCC-- ; cor=; Ncor= a 0 0 0 1.05485 34.8101 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 47.4684 0 0 c 0 0 0 836.498 659.283 912.447 996.835 1.05485 996.835 996.835 996.835 950.422 0 0 g 0 0 0 1.05485 51.6878 85.443 1.05485 731.013 1.05485 1.05485 1.05485 1.05485 0 0 t 0 0 0 161.392 254.219 1.05485 1.05485 266.878 1.05485 1.05485 1.05485 1.05485 0 0
MA2328.1_shift4 (ZBED4)				; oligos_6nt_mkv1_m1 versus MA2328.1 (ZBED4); m=15/31; ncol2=10; w=0; offset=4; strand=D; shift=4; score=0.579418; ----CcCGCyCCGC ; cor=; Ncor= a 0 0 0 0 41.0 26.0 29.0 17.0 6.0 11.0 14.0 12.0 22.0 19.0 c 0 0 0 0 479.0 419.0 549.0 14.0 621.0 391.0 598.0 604.0 19.0 589.0 g 0 0 0 0 80.0 65.0 62.0 608.0 26.0 28.0 34.0 23.0 580.0 35.0 t 0 0 0 0 60.0 150.0 20.0 21.0 7.0 230.0 14.0 21.0 39.0 17.0
MA1630.3_rc_shift3 (ZNF281_rc)				; oligos_6nt_mkv1_m1 versus MA1630.3_rc (ZNF281_rc); m=16/31; ncol2=10; w=0; offset=3; strand=R; shift=3; score=0.566028; ---CCCCTCCCCC- ; cor=; Ncor= a 0 0 0 7.0 18.0 1.0 105.0 96.0 1.0 1.0 1.0 1.0 1.0 0 c 0 0 0 920.0 940.0 998.0 772.0 1.0 998.0 998.0 963.0 998.0 998.0 0 g 0 0 0 27.0 1.0 1.0 1.0 183.0 1.0 1.0 1.0 1.0 1.0 0 t 0 0 0 47.0 41.0 1.0 122.0 720.0 1.0 1.0 35.0 1.0 1.0 0
MA1513.2_shift3 (KLF15)				; oligos_6nt_mkv1_m1 versus MA1513.2 (KLF15); m=17/31; ncol2=8; w=0; offset=3; strand=D; shift=3; score=0.561569; ---cCCCGCCC--- ; cor=; Ncor= a 0 0 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 0 0 c 0 0 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 0 0 g 0 0 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 0 0 t 0 0 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0 0 0
MA1512.2_shift3 (KLF11)				; oligos_6nt_mkv1_m1 versus MA1512.2 (KLF11); m=18/31; ncol2=10; w=0; offset=3; strand=D; shift=3; score=0.550106; ---cCACGCCCmC- ; cor=; Ncor= a 0 0 0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 581.0 0 c 0 0 0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 8403.0 0 g 0 0 0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 358.0 0 t 0 0 0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0 1281.0 0
MA1959.2_rc_shift3 (KLF7_rc)				; oligos_6nt_mkv1_m1 versus MA1959.2_rc (KLF7_rc); m=19/31; ncol2=8; w=0; offset=3; strand=R; shift=3; score=0.548888; ---CcMCGCCC--- ; cor=; Ncor= a 0 0 0 1.0 167.0 254.0 1.0 167.0 1.0 1.0 1.0 0 0 0 c 0 0 0 997.0 642.0 720.0 997.0 1.0 997.0 997.0 997.0 0 0 0 g 0 0 0 1.0 42.0 25.0 1.0 788.0 1.0 1.0 1.0 0 0 0 t 0 0 0 1.0 150.0 1.0 1.0 45.0 1.0 1.0 1.0 0 0 0
MA0753.3_shift3 (ZNF740)				; oligos_6nt_mkv1_m1 versus MA0753.3 (ZNF740); m=20/31; ncol2=10; w=0; offset=3; strand=D; shift=3; score=0.540579; ---CCCCCCCCAc- ; cor=; Ncor= a 0 0 0 60.0 110.0 18.0 22.0 23.0 10.0 2.0 115.0 1055.0 207.0 0 c 0 0 0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 1055.0 239.0 1055.0 0 g 0 0 0 37.0 14.0 4.0 7.0 3.0 7.0 3.0 6.0 68.0 54.0 0 t 0 0 0 49.0 1.0 16.0 15.0 11.0 6.0 3.0 4.0 134.0 246.0 0
MA0493.3_rc_shift3 (KLF1_rc)				; oligos_6nt_mkv1_m1 versus MA0493.3_rc (KLF1_rc); m=21/31; ncol2=8; w=0; offset=3; strand=R; shift=3; score=0.539308; ---CCmCrCCC--- ; cor=; Ncor= a 0 0 0 1.0 21.0 324.0 1.0 346.0 1.0 1.0 1.0 0 0 0 c 0 0 0 998.0 896.0 675.0 998.0 1.0 998.0 998.0 998.0 0 0 0 g 0 0 0 1.0 1.0 1.0 1.0 529.0 1.0 1.0 1.0 0 0 0 t 0 0 0 1.0 82.0 1.0 1.0 125.0 1.0 1.0 1.0 0 0 0
MA1515.2_shift3 (KLF2)				; oligos_6nt_mkv1_m1 versus MA1515.2 (KLF2); m=22/31; ncol2=8; w=0; offset=3; strand=D; shift=3; score=0.503425; ---CCmCrCCC--- ; cor=; Ncor= a 0 0 0 741.0 403.0 4622.0 0.0 1702.0 0.0 128.0 68.0 0 0 0 c 0 0 0 4622.0 4622.0 2265.0 4622.0 274.0 4622.0 4622.0 4622.0 0 0 0 g 0 0 0 495.0 186.0 1060.0 0.0 2920.0 49.0 195.0 105.0 0 0 0 t 0 0 0 346.0 312.0 214.0 78.0 167.0 22.0 9.0 444.0 0 0 0
MA1517.2_shift3 (KLF6)				; oligos_6nt_mkv1_m1 versus MA1517.2 (KLF6); m=23/31; ncol2=9; w=0; offset=3; strand=D; shift=3; score=0.501415; ---cCACRCCCm-- ; cor=; Ncor= a 0 0 0 569.0 432.0 2192.0 0.0 1024.0 0.0 25.0 71.0 955.0 0 0 c 0 0 0 2192.0 2192.0 284.0 2192.0 0.0 2192.0 2192.0 2192.0 665.0 0 0 g 0 0 0 332.0 298.0 60.0 0.0 2192.0 0.0 60.0 12.0 52.0 0 0 t 0 0 0 219.0 140.0 60.0 24.0 0.0 0.0 0.0 64.0 520.0 0 0
MA0039.5_shift3 (KLF4)				; oligos_6nt_mkv1_m1 versus MA0039.5 (KLF4); m=24/31; ncol2=8; w=0; offset=3; strand=D; shift=3; score=0.485787; ---CCCCACCC--- ; cor=; Ncor= a 0 0 0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 0 0 0 c 0 0 0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 0 0 0 g 0 0 0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 0 0 0 t 0 0 0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 0 0 0
MA1522.2_shift3 (MAZ)				; oligos_6nt_mkv1_m1 versus MA1522.2 (MAZ); m=25/31; ncol2=8; w=0; offset=3; strand=D; shift=3; score=0.45843; ---CCCCTCCc--- ; cor=; Ncor= a 0 0 0 17.0 49.0 36.0 39.0 6.0 90.0 23.0 1109.0 0 0 0 c 0 0 0 14945.0 14630.0 14731.0 14676.0 0.0 14961.0 14944.0 9372.0 0 0 0 g 0 0 0 75.0 384.0 290.0 347.0 130.0 8.0 96.0 1768.0 0 0 0 t 0 0 0 26.0 0.0 6.0 1.0 14927.0 4.0 0.0 2814.0 0 0 0
MA0471.3_rc_shift2 (E2F6_rc)				; oligos_6nt_mkv1_m1 versus MA0471.3_rc (E2F6_rc); m=26/31; ncol2=8; w=0; offset=2; strand=R; shift=2; score=0.450567; --TTCCCGCC---- ; cor=; Ncor= a 0 0 757.0 268.0 296.0 353.0 813.0 2125.0 205.0 453.0 0 0 0 0 c 0 0 5021.0 2322.0 31614.0 31973.0 30573.0 693.0 31790.0 29387.0 0 0 0 0 g 0 0 1595.0 1171.0 834.0 434.0 539.0 26424.0 837.0 1148.0 0 0 0 0 t 0 0 25725.0 29337.0 354.0 338.0 1173.0 3856.0 266.0 2110.0 0 0 0 0
MA0162.5_shift5 (EGR1)				; oligos_6nt_mkv1_m1 versus MA0162.5 (EGR1); m=27/31; ncol2=10; w=0; offset=5; strand=D; shift=5; score=0.447086; -----mCGCCCACg ; cor=; Ncor= a 0 0 0 0 0 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 c 0 0 0 0 0 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 g 0 0 0 0 0 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 t 0 0 0 0 0 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0
MA0733.2_shift5 (EGR4)				; oligos_6nt_mkv1_m1 versus MA0733.2 (EGR4); m=28/31; ncol2=11; w=0; offset=5; strand=D; shift=5; score=0.429239; -----mCGCCCACG ; cor=; Ncor= a 0 0 0 0 0 2745.0 101.0 556.0 11.0 120.0 0.0 4500.0 44.0 233.0 c 0 0 0 0 0 1924.0 4466.0 475.0 4447.0 4448.0 4403.0 1055.0 4402.0 1793.0 g 0 0 0 0 0 151.0 150.0 7053.0 63.0 107.0 110.0 348.0 114.0 6862.0 t 0 0 0 0 0 158.0 319.0 707.0 88.0 76.0 131.0 363.0 245.0 253.0
MA1122.2_rc_shift2 (TFDP1_rc)				; oligos_6nt_mkv1_m1 versus MA1122.2_rc (TFDP1_rc); m=29/31; ncol2=8; w=0; offset=2; strand=R; shift=2; score=0.422569; --TTCCCGCs---- ; cor=; Ncor= a 0 0 55.0 30.0 29.0 26.0 7.0 71.0 26.0 120.0 0 0 0 0 c 0 0 137.0 98.0 1919.0 1865.0 1932.0 22.0 1862.0 940.0 0 0 0 0 g 0 0 170.0 24.0 32.0 80.0 54.0 1886.0 71.0 684.0 0 0 0 0 t 0 0 1645.0 1855.0 27.0 36.0 14.0 28.0 48.0 263.0 0 0 0 0
MA0732.2_shift5 (EGR3)				; oligos_6nt_mkv1_m1 versus MA0732.2 (EGR3); m=30/31; ncol2=11; w=0; offset=5; strand=D; shift=5; score=0.418872; -----mCGCCCMCG ; cor=; Ncor= a 0 0 0 0 0 1031.0 2.0 66.0 0.0 0.0 0.0 1159.0 0.0 39.0 c 0 0 0 0 0 701.0 1855.0 32.0 1856.0 1858.0 1823.0 455.0 1875.0 28.0 g 0 0 0 0 0 10.0 0.0 2158.0 2.0 0.0 7.0 11.0 7.0 2152.0 t 0 0 0 0 0 20.0 13.0 36.0 0.0 10.0 80.0 4.0 2.0 26.0
MA1615.2_rc_shift0 (Plagl1_rc)				; oligos_6nt_mkv1_m1 versus MA1615.2_rc (Plagl1_rc); m=31/31; ncol2=8; w=0; offset=0; strand=R; shift=0; score=0.402698; TGGCCCCa------ ; cor=; Ncor= a 371.0 398.0 321.0 142.0 183.0 323.0 118.0 9425.0 0 0 0 0 0 0 c 1032.0 422.0 313.0 13495.0 13517.0 12261.0 13595.0 1338.0 0 0 0 0 0 0 g 686.0 13152.0 12737.0 336.0 266.0 356.0 243.0 1471.0 0 0 0 0 0 0 t 12064.0 181.0 782.0 180.0 187.0 1213.0 197.0 1919.0 0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv1_m3_shift1 (oligos_7nt_mkv1_m3)				; oligos_7nt_mkv1_m3; m=0 (reference); ncol1=12; shift=1; ncol=13; -ssCACACGCmss ; Alignment reference a 0 1 2 0 12 0 14 0 0 0 9 3 2 c 0 8 8 15 1 14 2 16 0 16 4 4 7 g 0 5 5 1 3 1 0 0 16 0 2 7 6 t 0 2 1 0 0 1 0 0 0 0 1 2 1
MA1107.3_shift1 (KLF9)				; oligos_7nt_mkv1_m3 versus MA1107.3 (KLF9); m=1/10; ncol2=11; w=0; offset=0; strand=D; shift=1; score=0.673001; -gCCACACCCAC- ; cor=; Ncor= a 0 2862.0 4664.0 287.0 21899.0 221.0 19187.0 224.0 2428.0 146.0 18837.0 792.0 0 c 0 4342.0 17839.0 24709.0 2559.0 24863.0 1070.0 24365.0 22117.0 24682.0 4339.0 20644.0 0 g 0 16852.0 1660.0 291.0 708.0 353.0 4340.0 735.0 605.0 205.0 852.0 1778.0 0 t 0 1523.0 1416.0 292.0 413.0 142.0 982.0 255.0 429.0 546.0 1551.0 2365.0 0
MA0472.2_shift0 (EGR2)				; oligos_7nt_mkv1_m3 versus MA0472.2 (EGR2); m=2/10; ncol2=11; w=-1; offset=-1; strand=D; shift=0; score=0.598681; mCGCCCACGCa-- ; cor=; Ncor= a 1157.0 0.0 295.0 6.0 24.0 0.0 2147.0 0.0 106.0 4.0 1731.0 0 0 c 679.0 1551.0 0.0 1558.0 1554.0 1468.0 110.0 1573.0 0.0 1585.0 157.0 0 0 g 94.0 28.0 3731.0 25.0 15.0 38.0 26.0 2.0 4034.0 20.0 542.0 0 0 t 142.0 73.0 222.0 29.0 13.0 277.0 2.0 23.0 171.0 115.0 430.0 0 0
MA0733.2_shift0 (EGR4)				; oligos_7nt_mkv1_m3 versus MA0733.2 (EGR4); m=3/10; ncol2=11; w=-1; offset=-1; strand=D; shift=0; score=0.595092; mCGCCCACGCA-- ; cor=; Ncor= a 2745.0 101.0 556.0 11.0 120.0 0.0 4500.0 44.0 233.0 10.0 4608.0 0 0 c 1924.0 4466.0 475.0 4447.0 4448.0 4403.0 1055.0 4402.0 1793.0 4354.0 839.0 0 0 g 151.0 150.0 7053.0 63.0 107.0 110.0 348.0 114.0 6862.0 183.0 829.0 0 0 t 158.0 319.0 707.0 88.0 76.0 131.0 363.0 245.0 253.0 219.0 483.0 0 0
MA0732.2_shift0 (EGR3)				; oligos_7nt_mkv1_m3 versus MA0732.2 (EGR3); m=4/10; ncol2=11; w=-1; offset=-1; strand=D; shift=0; score=0.592922; mCGCCCMCGCA-- ; cor=; Ncor= a 1031.0 2.0 66.0 0.0 0.0 0.0 1159.0 0.0 39.0 2.0 1262.0 0 0 c 701.0 1855.0 32.0 1856.0 1858.0 1823.0 455.0 1875.0 28.0 1899.0 54.0 0 0 g 10.0 0.0 2158.0 2.0 0.0 7.0 11.0 7.0 2152.0 1.0 168.0 0 0 t 20.0 13.0 36.0 0.0 10.0 80.0 4.0 2.0 26.0 21.0 80.0 0 0
MA0162.5_shift0 (EGR1)				; oligos_7nt_mkv1_m3 versus MA0162.5 (EGR1); m=5/10; ncol2=10; w=-1; offset=-1; strand=D; shift=0; score=0.530631; mCGCCCACgC--- ; cor=; Ncor= a 14508.0 642.0 5110.0 227.0 1440.0 314.0 22297.0 153.0 4696.0 969.0 0 0 0 c 10303.0 28403.0 1131.0 29338.0 27321.0 28958.0 5420.0 29507.0 2806.0 25196.0 0 0 0 g 3854.0 756.0 22237.0 665.0 1455.0 698.0 2122.0 699.0 20544.0 2157.0 0 0 0 t 1933.0 797.0 2120.0 368.0 382.0 628.0 759.0 239.0 2552.0 2276.0 0 0 0
MA0632.3_shift2 (TCFL5)				; oligos_7nt_mkv1_m3 versus MA0632.3 (TCFL5); m=6/10; ncol2=8; w=0; offset=1; strand=D; shift=2; score=0.495734; --kCrCGCGC--- ; cor=; Ncor= a 0 0 2810.0 0.0 72543.0 0.0 1566.0 1765.0 3520.0 1593.0 0 0 0 c 0 0 10582.0 72543.0 0.0 72543.0 0.0 57092.0 657.0 72543.0 0 0 0 g 0 0 22297.0 0.0 29710.0 0.0 72543.0 0.0 72543.0 4594.0 0 0 0 t 0 0 36854.0 0.0 9359.0 1643.0 0.0 15451.0 0.0 635.0 0 0 0
MA1512.2_shift4 (KLF11)				; oligos_7nt_mkv1_m3 versus MA1512.2 (KLF11); m=7/10; ncol2=10; w=0; offset=3; strand=D; shift=4; score=0.485635; ----cCACGCCCm ; cor=; Ncor= a 0 0 0 0 2022.0 650.0 8655.0 0.0 2426.0 11.0 1.0 0.0 4689.0 c 0 0 0 0 5549.0 8662.0 1289.0 9142.0 52.0 9161.0 9166.0 8941.0 4226.0 g 0 0 0 0 401.0 156.0 115.0 0.0 8291.0 18.0 20.0 4.0 69.0 t 0 0 0 0 1192.0 506.0 27.0 38.0 349.0 23.0 7.0 885.0 761.0
MA1099.3_rc_shift5 (HES1_rc)				; oligos_7nt_mkv1_m3 versus MA1099.3_rc (HES1_rc); m=8/10; ncol2=8; w=0; offset=4; strand=R; shift=5; score=0.485476; -----CACGyGcc ; cor=; Ncor= a 0 0 0 0 0 53.0 18526.0 0.0 791.0 232.0 18.0 8007.0 4239.0 c 0 0 0 0 0 18526.0 0.0 18526.0 0.0 9081.0 0.0 18526.0 18526.0 g 0 0 0 0 0 0.0 4057.0 0.0 18526.0 0.0 18526.0 2072.0 3492.0 t 0 0 0 0 0 1.0 253.0 21.0 0.0 9446.0 464.0 5858.0 3321.0
MA0006.2_rc_shift5 (Ahr::Arnt_rc)				; oligos_7nt_mkv1_m3 versus MA0006.2_rc (Ahr::Arnt_rc); m=9/10; ncol2=5; w=0; offset=4; strand=R; shift=5; score=0.412874; -----CACGC--- ; cor=; Ncor= a 0 0 0 0 0 0.0 24.0 1.0 1.0 1.0 0 0 0 c 0 0 0 0 0 24.0 0.0 23.0 0.0 23.0 0 0 0 g 0 0 0 0 0 0.0 0.0 0.0 23.0 0.0 0 0 0 t 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 0 0 0
MA0039.5_shift0 (KLF4)				; oligos_7nt_mkv1_m3 versus MA0039.5 (KLF4); m=10/10; ncol2=8; w=-1; offset=-1; strand=D; shift=0; score=0.401412; CCCCACCC----- ; cor=; Ncor= a 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 0 0 0 0 0 c 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 0 0 0 0 0 g 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 0 0 0 0 0 t 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv1_m5_shift0 (oligos_6nt_mkv1_m5)				; oligos_6nt_mkv1_m5; m=0 (reference); ncol1=10; shift=0; ncol=10; ssCCCGGCsc ; Alignment reference a 7 5 1 0 0 0 3 0 7 5 c 10 13 33 34 34 0 0 34 13 14 g 10 12 0 0 0 34 31 0 11 8 t 7 4 0 0 0 0 0 0 3 7
MA0516.3_rc_shift1 (SP2_rc)				; oligos_6nt_mkv1_m5 versus MA0516.3_rc (SP2_rc); m=1/3; ncol2=9; w=0; offset=1; strand=R; shift=1; score=0.660411; -cCCCGCCCC ; cor=; Ncor= a 0 18.3284 0.733138 24.1935 0.733138 0.733138 0.733138 0.733138 0.733138 79.912 c 0 610.704 877.566 974.34 997.801 0.733138 997.801 997.801 830.645 766.129 g 0 164.956 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 0.733138 t 0 206.012 120.968 0.733138 0.733138 112.17 0.733138 0.733138 167.889 153.226
MA1513.2_shift1 (KLF15)				; oligos_6nt_mkv1_m5 versus MA1513.2 (KLF15); m=2/3; ncol2=8; w=0; offset=1; strand=D; shift=1; score=0.599675; -cCCCGCCC- ; cor=; Ncor= a 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 c 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 g 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 t 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0
MA2121.1_shift0 (ZNF213)				; oligos_6nt_mkv1_m5 versus MA2121.1 (ZNF213); m=3/3; ncol2=12; w=0; offset=0; strand=D; shift=0; score=0.587897; gCCCAGGCwG ; cor=; Ncor= a 119.0 26.0 18.0 15.0 577.0 10.0 12.0 16.0 229.0 42.0 c 89.0 581.0 603.0 630.0 34.0 13.0 25.0 642.0 97.0 76.0 g 403.0 52.0 34.0 34.0 54.0 661.0 639.0 22.0 124.0 519.0 t 76.0 28.0 32.0 8.0 22.0 3.0 11.0 7.0 237.0 50.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv1_m2_shift3 (oligos_6nt_mkv1_m2)				; oligos_6nt_mkv1_m2; m=0 (reference); ncol1=10; shift=3; ncol=13; ---sbAAATATkw ; Alignment reference a 0 0 0 4 5 21 19 22 1 18 1 4 6 c 0 0 0 9 6 1 1 1 1 2 0 2 3 g 0 0 0 6 6 1 1 0 2 3 1 7 2 t 0 0 0 4 6 0 2 0 19 0 21 10 12
MA0602.2_rc_shift5 (Arid5a_rc)				; oligos_6nt_mkv1_m2 versus MA0602.2_rc (Arid5a_rc); m=1/6; ncol2=8; w=0; offset=2; strand=R; shift=5; score=0.648708; -----cAATATTr ; cor=; Ncor= a 0 0 0 0 0 22.0 83.0 96.0 6.0 93.0 2.0 5.0 48.0 c 0 0 0 0 0 52.0 4.0 1.0 1.0 1.0 1.0 7.0 3.0 g 0 0 0 0 0 3.0 9.0 1.0 1.0 0.0 0.0 3.0 32.0 t 0 0 0 0 0 23.0 4.0 2.0 93.0 6.0 96.0 85.0 16.0
MA2124.1_rc_shift3 (Hmga1_rc)				; oligos_6nt_mkv1_m2 versus MA2124.1_rc (Hmga1_rc); m=2/6; ncol2=8; w=0; offset=0; strand=R; shift=3; score=0.56959; ---wTAAAAAT-- ; cor=; Ncor= a 0 0 0 11340.0 542.0 24333.0 24654.0 24779.0 24269.0 24172.0 496.0 0 0 c 0 0 0 2438.0 358.0 294.0 237.0 138.0 303.0 421.0 188.0 0 0 g 0 0 0 2348.0 473.0 409.0 264.0 194.0 200.0 393.0 71.0 0 0 t 0 0 0 9680.0 24433.0 770.0 651.0 695.0 1034.0 820.0 25051.0 0 0
MA0033.2_shift3 (FOXL1)				; oligos_6nt_mkv1_m2 versus MA0033.2 (FOXL1); m=3/6; ncol2=7; w=0; offset=0; strand=D; shift=3; score=0.503211; ---rTAAACA--- ; cor=; Ncor= a 0 0 0 2102.0 10.0 4780.0 4780.0 4780.0 0.0 4780.0 0 0 0 c 0 0 0 13.0 416.0 628.0 38.0 82.0 3723.0 54.0 0 0 0 g 0 0 0 2678.0 0.0 57.0 0.0 50.0 0.0 0.0 0 0 0 t 0 0 0 140.0 4780.0 0.0 15.0 0.0 1057.0 17.0 0 0 0
MA0032.2_shift0 (FOXC1)				; oligos_6nt_mkv1_m2 versus MA0032.2 (FOXC1); m=4/6; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score=0.482354; wAwRTMAAyAw-- ; cor=; Ncor= a 6452.0 14324.0 7893.0 4858.0 2496.0 13117.0 18489.0 18489.0 122.0 18489.0 6702.0 0 0 c 772.0 728.0 2008.0 336.0 1652.0 5372.0 108.0 56.0 8782.0 27.0 1558.0 0 0 g 304.0 4165.0 2422.0 13631.0 390.0 21.0 0.0 141.0 165.0 433.0 1107.0 0 0 t 12038.0 1386.0 10596.0 51.0 18489.0 45.0 57.0 112.0 9708.0 184.0 11787.0 0 0
MA0845.1_shift0 (FOXB1)				; oligos_6nt_mkv1_m2 versus MA0845.1 (FOXB1); m=5/6; ncol2=11; w=-3; offset=-3; strand=D; shift=0; score=0.481092; wAwGTMAAyAt-- ; cor=; Ncor= a 2393.0 5343.0 1983.0 1159.0 180.0 4891.0 6841.0 6841.0 28.0 6841.0 1704.0 0 0 c 272.0 263.0 218.0 54.0 240.0 1950.0 213.0 47.0 2252.0 0.0 573.0 0 0 g 190.0 1498.0 409.0 6841.0 113.0 75.0 0.0 47.0 104.0 157.0 556.0 0 0 t 4448.0 561.0 4858.0 124.0 6841.0 73.0 381.0 216.0 4589.0 147.0 4008.0 0 0
MA0052.5_shift1 (MEF2A)				; oligos_6nt_mkv1_m2 versus MA0052.5 (MEF2A); m=6/6; ncol2=10; w=-2; offset=-2; strand=D; shift=1; score=0.470205; -cTAAAAATAG-- ; cor=; Ncor= a 0 1984.0 627.0 12437.0 13132.0 14680.0 14453.0 14956.0 441.0 15582.0 2566.0 0 0 c 0 10919.0 2974.0 1013.0 253.0 141.0 231.0 173.0 349.0 50.0 1060.0 0 0 g 0 1007.0 236.0 1066.0 610.0 506.0 241.0 202.0 215.0 422.0 11104.0 0 0 t 0 2252.0 12325.0 1646.0 2167.0 835.0 1237.0 831.0 15157.0 108.0 1432.0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv1_m4_shift4 (oligos_7nt_mkv1_m4)				; oligos_7nt_mkv1_m4; m=0 (reference); ncol1=12; shift=4; ncol=16; ----ssCCGCCGCGss ; Alignment reference a 0 0 0 0 3 2 3 1 0 0 3 0 0 0 1 6 c 0 0 0 0 12 15 29 33 2 32 26 3 31 6 15 13 g 0 0 0 0 12 16 2 0 31 2 5 31 2 27 12 10 t 0 0 0 0 7 1 0 0 1 0 0 0 1 1 6 5
MA2328.1_shift5 (ZBED4)				; oligos_7nt_mkv1_m4 versus MA2328.1 (ZBED4); m=1/15; ncol2=10; w=0; offset=1; strand=D; shift=5; score=0.630372; -----CcCGCyCCGC- ; cor=; Ncor= a 0 0 0 0 0 41.0 26.0 29.0 17.0 6.0 11.0 14.0 12.0 22.0 19.0 0 c 0 0 0 0 0 479.0 419.0 549.0 14.0 621.0 391.0 598.0 604.0 19.0 589.0 0 g 0 0 0 0 0 80.0 65.0 62.0 608.0 26.0 28.0 34.0 23.0 580.0 35.0 0 t 0 0 0 0 0 60.0 150.0 20.0 21.0 7.0 230.0 14.0 21.0 39.0 17.0 0
MA1713.2_shift6 (ZNF610)				; oligos_7nt_mkv1_m4 versus MA1713.2 (ZNF610); m=2/15; ncol2=10; w=0; offset=2; strand=D; shift=6; score=0.608936; ------scGCCGCTCC ; cor=; Ncor= a 0 0 0 0 0 0 176.0 354.0 68.0 37.0 18.0 18.0 4.0 18.0 6.0 123.0 c 0 0 0 0 0 0 1222.0 1347.0 121.0 2245.0 2312.0 45.0 2357.0 34.0 2315.0 1976.0 g 0 0 0 0 0 0 738.0 392.0 2118.0 84.0 41.0 2312.0 21.0 45.0 62.0 186.0 t 0 0 0 0 0 0 250.0 293.0 79.0 20.0 15.0 11.0 4.0 2289.0 3.0 101.0
MA0516.3_rc_shift4 (SP2_rc)				; oligos_7nt_mkv1_m4 versus MA0516.3_rc (SP2_rc); m=3/15; ncol2=9; w=0; offset=0; strand=R; shift=4; score=0.580909; ----cCCCGCCCC--- ; cor=; Ncor= a 0 0 0 0 18.3284 0.733138 24.1935 0.733138 0.733138 0.733138 0.733138 0.733138 79.912 0 0 0 c 0 0 0 0 610.704 877.566 974.34 997.801 0.733138 997.801 997.801 830.645 766.129 0 0 0 g 0 0 0 0 164.956 0.733138 0.733138 0.733138 886.364 0.733138 0.733138 0.733138 0.733138 0 0 0 t 0 0 0 0 206.012 120.968 0.733138 0.733138 112.17 0.733138 0.733138 167.889 153.226 0 0 0
MA0079.5_rc_shift4 (SP1_rc)				; oligos_7nt_mkv1_m4 versus MA0079.5_rc (SP1_rc); m=4/15; ncol2=9; w=0; offset=0; strand=R; shift=4; score=0.556107; ----CyCCKCCCC--- ; cor=; Ncor= a 0 0 0 0 1.05485 34.8101 1.05485 1.05485 1.05485 1.05485 1.05485 1.05485 47.4684 0 0 0 c 0 0 0 0 836.498 659.283 912.447 996.835 1.05485 996.835 996.835 996.835 950.422 0 0 0 g 0 0 0 0 1.05485 51.6878 85.443 1.05485 731.013 1.05485 1.05485 1.05485 1.05485 0 0 0 t 0 0 0 0 161.392 254.219 1.05485 1.05485 266.878 1.05485 1.05485 1.05485 1.05485 0 0 0
MA0742.2_rc_shift4 (KLF12_rc)				; oligos_7nt_mkv1_m4 versus MA0742.2_rc (KLF12_rc); m=5/15; ncol2=9; w=0; offset=0; strand=R; shift=4; score=0.54005; ----CCCCGCCCC--- ; cor=; Ncor= a 0 0 0 0 29.2208 0.649351 190.26 0.649351 0.649351 0.649351 0.649351 0.649351 187.662 0 0 0 c 0 0 0 0 969.481 930.519 725.325 998.052 0.649351 998.052 998.052 912.338 709.74 0 0 0 g 0 0 0 0 0.649351 0.649351 78.5714 0.649351 951.299 0.649351 0.649351 0.649351 0.649351 0 0 0 t 0 0 0 0 0.649351 68.1818 5.84416 0.649351 47.4026 0.649351 0.649351 86.3636 101.948 0 0 0
MA1511.2_rc_shift4 (KLF10_rc)				; oligos_7nt_mkv1_m4 versus MA1511.2_rc (KLF10_rc); m=6/15; ncol2=9; w=0; offset=0; strand=R; shift=4; score=0.536054; ----CCMCGCCCC--- ; cor=; Ncor= a 0 0 0 0 49.3528 26.699 253.236 0.809061 152.913 0.809061 0.809061 0.809061 104.369 0 0 0 c 0 0 0 0 884.304 906.958 693.366 997.573 0.809061 997.573 997.573 997.573 819.579 0 0 0 g 0 0 0 0 0.809061 0.809061 52.589 0.809061 803.398 0.809061 0.809061 0.809061 0.809061 0 0 0 t 0 0 0 0 65.534 65.534 0.809061 0.809061 42.8803 0.809061 0.809061 0.809061 75.2427 0 0 0
MA0740.2_rc_shift4 (KLF14_rc)				; oligos_7nt_mkv1_m4 versus MA0740.2_rc (KLF14_rc); m=7/15; ncol2=9; w=0; offset=0; strand=R; shift=4; score=0.527162; ----CCMCGCCCm--- ; cor=; Ncor= a 0 0 0 0 0.635877 0.635877 280.83 0.635877 90.067 0.635877 0.635877 0.635877 348.681 0 0 0 c 0 0 0 0 738.662 891.023 717.898 998.092 0.635877 998.092 998.092 998.092 619.525 0 0 0 g 0 0 0 0 62.0884 0.635877 0.635877 0.635877 814.392 0.635877 0.635877 0.635877 0.635877 0 0 0 t 0 0 0 0 198.614 107.705 0.635877 0.635877 94.9046 0.635877 0.635877 0.635877 31.158 0 0 0
MA1513.2_shift4 (KLF15)				; oligos_7nt_mkv1_m4 versus MA1513.2 (KLF15); m=8/15; ncol2=8; w=0; offset=0; strand=D; shift=4; score=0.498885; ----cCCCGCCC---- ; cor=; Ncor= a 0 0 0 0 937.0 40.0 93.0 0.0 0.0 11.0 55.0 12.0 0 0 0 0 c 0 0 0 0 6506.0 11234.0 10940.0 11368.0 0.0 11345.0 10954.0 11254.0 0 0 0 0 g 0 0 0 0 2117.0 86.0 333.0 1.0 11369.0 2.0 359.0 100.0 0 0 0 0 t 0 0 0 0 1809.0 9.0 3.0 0.0 0.0 11.0 1.0 3.0 0 0 0 0
MA1584.2_shift0 (ZIC5)				; oligos_7nt_mkv1_m4 versus MA1584.2 (ZIC5); m=9/15; ncol2=15; w=-4; offset=-4; strand=D; shift=0; score=0.498104; gACCCCCCGCtGyGm- ; cor=; Ncor= a 555.0 19266.0 250.0 147.0 1311.0 5.0 67.0 10.0 2110.0 2.0 2536.0 251.0 5255.0 52.0 8073.0 0 c 3318.0 2320.0 21201.0 21163.0 20221.0 21263.0 21235.0 17685.0 21.0 19607.0 3844.0 8.0 9445.0 1733.0 11606.0 0 g 17329.0 2765.0 0.0 58.0 470.0 0.0 2.0 0.0 20412.0 235.0 3252.0 21153.0 1725.0 19961.0 792.0 0 t 5687.0 0.0 17.0 57.0 328.0 1.0 2.0 3577.0 23.0 5843.0 18007.0 2.0 10267.0 2756.0 5356.0 0
MA1721.2_rc_shift6 (ZNF93_rc)				; oligos_7nt_mkv1_m4 versus MA1721.2_rc (ZNF93_rc); m=10/15; ncol2=14; w=0; offset=2; strand=R; shift=6; score=0.465067; ------CCGCTGCyGm ; cor=; Ncor= a 0 0 0 0 0 0 37.0 126.0 44.0 10.0 57.0 44.0 10.0 32.0 50.0 730.0 c 0 0 0 0 0 0 2145.0 1784.0 33.0 2328.0 576.0 42.0 2334.0 1263.0 22.0 1483.0 g 0 0 0 0 0 0 134.0 138.0 2292.0 20.0 96.0 2279.0 26.0 92.0 2278.0 114.0 t 0 0 0 0 0 0 72.0 340.0 19.0 30.0 1659.0 23.0 18.0 1001.0 38.0 61.0
MA0471.3_rc_shift3 (E2F6_rc)				; oligos_7nt_mkv1_m4 versus MA0471.3_rc (E2F6_rc); m=11/15; ncol2=8; w=-1; offset=-1; strand=R; shift=3; score=0.452851; ---TTCCCGCC----- ; cor=; Ncor= a 0 0 0 757.0 268.0 296.0 353.0 813.0 2125.0 205.0 453.0 0 0 0 0 0 c 0 0 0 5021.0 2322.0 31614.0 31973.0 30573.0 693.0 31790.0 29387.0 0 0 0 0 0 g 0 0 0 1595.0 1171.0 834.0 434.0 539.0 26424.0 837.0 1148.0 0 0 0 0 0 t 0 0 0 25725.0 29337.0 354.0 338.0 1173.0 3856.0 266.0 2110.0 0 0 0 0 0
MA0751.2_shift0 (ZIC4)				; oligos_7nt_mkv1_m4 versus MA0751.2 (ZIC4); m=12/15; ncol2=14; w=-4; offset=-4; strand=D; shift=0; score=0.439456; krCCCCCyGykGyG-- ; cor=; Ncor= a 578.0 3013.0 315.0 209.0 614.0 8.0 114.0 24.0 1095.0 24.0 1052.0 258.0 704.0 74.0 0 0 c 934.0 812.0 2870.0 2890.0 2757.0 2999.0 2985.0 2222.0 68.0 2279.0 865.0 18.0 1044.0 452.0 0 0 g 4126.0 1553.0 52.0 121.0 225.0 0.0 0.0 6.0 4795.0 252.0 1903.0 5086.0 599.0 4522.0 0 0 t 1887.0 21.0 98.0 147.0 275.0 1.0 11.0 1078.0 69.0 1017.0 3488.0 67.0 1454.0 1156.0 0 0
MA1650.2_shift9 (ZBTB14)				; oligos_7nt_mkv1_m4 versus MA1650.2 (ZBTB14); m=13/15; ncol2=8; w=0; offset=5; strand=D; shift=9; score=0.437526; ---------CCGCGCA ; cor=; Ncor= a 0 0 0 0 0 0 0 0 0 335.0 41.0 93.0 68.0 132.0 56.0 4500.0 c 0 0 0 0 0 0 0 0 0 3525.0 4292.0 294.0 4078.0 305.0 4178.0 37.0 g 0 0 0 0 0 0 0 0 0 614.0 155.0 4098.0 319.0 4043.0 261.0 10.0 t 0 0 0 0 0 0 0 0 0 73.0 59.0 62.0 82.0 67.0 52.0 0.0
MA1122.2_rc_shift3 (TFDP1_rc)				; oligos_7nt_mkv1_m4 versus MA1122.2_rc (TFDP1_rc); m=14/15; ncol2=8; w=-1; offset=-1; strand=R; shift=3; score=0.435843; ---TTCCCGCs----- ; cor=; Ncor= a 0 0 0 55.0 30.0 29.0 26.0 7.0 71.0 26.0 120.0 0 0 0 0 0 c 0 0 0 137.0 98.0 1919.0 1865.0 1932.0 22.0 1862.0 940.0 0 0 0 0 0 g 0 0 0 170.0 24.0 32.0 80.0 54.0 1886.0 71.0 684.0 0 0 0 0 0 t 0 0 0 1645.0 1855.0 27.0 36.0 14.0 28.0 48.0 263.0 0 0 0 0 0
MA0865.3_shift3 (E2F8)				; oligos_7nt_mkv1_m4 versus MA0865.3 (E2F8); m=15/15; ncol2=9; w=-1; offset=-1; strand=D; shift=3; score=0.433268; ---tTCCCGCcA---- ; cor=; Ncor= a 0 0 0 155.0 405.0 78.0 12.0 44.0 39.0 1.0 104.0 1566.0 0 0 0 0 c 0 0 0 321.0 237.0 1566.0 1566.0 1566.0 7.0 1566.0 1566.0 128.0 0 0 0 0 g 0 0 0 78.0 96.0 170.0 374.0 6.0 1566.0 26.0 537.0 95.0 0 0 0 0 t 0 0 0 1012.0 1566.0 16.0 0.0 13.0 13.0 15.0 274.0 97.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv1_m5_shift1 (oligos_7nt_mkv1_m5)				; oligos_7nt_mkv1_m5; m=0 (reference); ncol1=11; shift=1; ncol=12; -ycCCCAGCAcv ; Alignment reference a 0 3 4 0 0 0 20 0 0 22 3 6 c 0 8 8 22 21 22 1 1 21 0 13 9 g 0 5 5 0 1 0 1 21 1 0 3 6 t 0 6 5 0 0 0 0 0 0 0 3 1
MA2125.1_shift1 (Zfp809)				; oligos_7nt_mkv1_m5 versus MA2125.1 (Zfp809); m=1/8; ncol2=9; w=0; offset=0; strand=D; shift=1; score=0.621377; -wTCCCAGCc-- ; cor=; Ncor= a 0 828.0 23.0 15.0 20.0 10.0 1529.0 32.0 287.0 217.0 0 0 c 0 66.0 41.0 1607.0 1610.0 1621.0 26.0 35.0 1218.0 1091.0 0 0 g 0 81.0 23.0 18.0 14.0 16.0 73.0 1572.0 99.0 115.0 0 0 t 0 690.0 1578.0 25.0 21.0 18.0 37.0 26.0 61.0 242.0 0 0
MA1629.2_shift3 (Zic2)				; oligos_7nt_mkv1_m5 versus MA1629.2 (Zic2); m=2/8; ncol2=9; w=0; offset=2; strand=D; shift=3; score=0.592486; ---CaCAGCAGG ; cor=; Ncor= a 0 0 0 1161.0 6888.0 135.0 11074.0 140.0 80.0 10625.0 192.0 96.0 c 0 0 0 9933.0 1765.0 11476.0 391.0 228.0 11272.0 118.0 133.0 204.0 g 0 0 0 585.0 829.0 188.0 186.0 11484.0 269.0 735.0 11184.0 11465.0 t 0 0 0 240.0 2437.0 120.0 268.0 67.0 298.0 441.0 410.0 154.0
MA1724.2_shift3 (Rfx6)				; oligos_7nt_mkv1_m5 versus MA1724.2 (Rfx6); m=3/8; ncol2=9; w=0; offset=2; strand=D; shift=3; score=0.590242; ---CCTAGCAAC ; cor=; Ncor= a 0 0 0 187.0 1093.0 344.0 7215.0 179.0 378.0 8085.0 7740.0 552.0 c 0 0 0 7859.0 6405.0 1066.0 64.0 102.0 7474.0 117.0 258.0 6811.0 g 0 0 0 232.0 242.0 146.0 1205.0 8215.0 359.0 132.0 339.0 552.0 t 0 0 0 272.0 810.0 6994.0 66.0 54.0 339.0 216.0 213.0 635.0
MA2330.1_shift3 (ZBTB24)				; oligos_7nt_mkv1_m5 versus MA2330.1 (ZBTB24); m=4/8; ncol2=10; w=0; offset=2; strand=D; shift=3; score=0.587672; ---cCCAGGACC ; cor=; Ncor= a 0 0 0 65.0 58.0 28.0 667.0 25.0 49.0 629.0 41.0 84.0 c 0 0 0 534.0 662.0 750.0 53.0 35.0 67.0 70.0 705.0 641.0 g 0 0 0 127.0 47.0 24.0 62.0 738.0 677.0 57.0 49.0 48.0 t 0 0 0 102.0 61.0 26.0 46.0 30.0 35.0 72.0 33.0 55.0
MA1628.2_shift5 (Zic1::Zic2)				; oligos_7nt_mkv1_m5 versus MA1628.2 (Zic1::Zic2); m=5/8; ncol2=7; w=0; offset=4; strand=D; shift=5; score=0.505948; -----CAGCAGG ; cor=; Ncor= a 0 0 0 0 0 29.0 9238.0 96.0 75.0 8950.0 11.0 46.0 c 0 0 0 0 0 9594.0 384.0 195.0 9293.0 311.0 512.0 91.0 g 0 0 0 0 0 106.0 266.0 9527.0 96.0 627.0 9279.0 9631.0 t 0 0 0 0 0 163.0 4.0 74.0 428.0 4.0 90.0 124.0
MA0697.3_shift5 (Zic3)				; oligos_7nt_mkv1_m5 versus MA0697.3 (Zic3); m=6/8; ncol2=7; w=0; offset=4; strand=D; shift=5; score=0.505716; -----CAGCAGG ; cor=; Ncor= a 0 0 0 0 0 345.0 23947.0 331.0 354.0 22980.0 393.0 347.0 c 0 0 0 0 0 25035.0 872.0 670.0 24272.0 568.0 500.0 955.0 g 0 0 0 0 0 460.0 759.0 24907.0 756.0 1768.0 24314.0 24340.0 t 0 0 0 0 0 334.0 596.0 266.0 792.0 858.0 967.0 532.0
MA1116.2_rc_shift1 (RBPJ_rc)				; oligos_7nt_mkv1_m5 versus MA1116.2_rc (RBPJ_rc); m=7/8; ncol2=6; w=0; offset=0; strand=R; shift=1; score=0.437112; -TTCCCA----- ; cor=; Ncor= a 0 4.0 29.0 78.0 60.0 1.0 2386.0 0 0 0 0 0 c 0 1.0 4.0 2309.0 2313.0 2341.0 2.0 0 0 0 0 0 g 0 15.0 0.0 8.0 20.0 25.0 12.0 0 0 0 0 0 t 0 2382.0 2369.0 7.0 9.0 35.0 2.0 0 0 0 0 0
MA1986.2_shift0 (ZNF692)				; oligos_7nt_mkv1_m5 versus MA1986.2 (ZNF692); m=8/8; ncol2=8; w=-1; offset=-1; strand=D; shift=0; score=0.425395; gGGCCCAs---- ; cor=; Ncor= a 1403.0 0.0 31.0 27.0 41.0 3.0 10535.0 852.0 0 0 0 0 c 1314.0 90.0 4.0 10689.0 10446.0 10545.0 0.0 4998.0 0 0 0 0 g 6833.0 10642.0 10684.0 7.0 241.0 176.0 210.0 3703.0 0 0 0 0 t 1195.0 13.0 26.0 22.0 17.0 21.0 0.0 1192.0 0 0 0 0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_7nt_mkv1_m2_shift0 (oligos_7nt_mkv1_m2)				; oligos_7nt_mkv1_m2; m=0 (reference); ncol1=12; shift=0; ncol=12; msAGACACACaC ; Alignment reference a 10 4 20 1 21 0 21 0 22 1 10 2 c 6 7 1 3 0 18 0 22 0 19 4 15 g 3 8 1 17 1 3 1 0 0 2 4 5 t 3 3 0 1 0 1 0 0 0 0 4 0
MA1107.3_shift3 (KLF9)				; oligos_7nt_mkv1_m2 versus MA1107.3 (KLF9); m=1/3; ncol2=11; w=0; offset=3; strand=D; shift=3; score=0.49671; ---gCCACACCC ; cor=; Ncor= a 0 0 0 2862.0 4664.0 287.0 21899.0 221.0 19187.0 224.0 2428.0 146.0 c 0 0 0 4342.0 17839.0 24709.0 2559.0 24863.0 1070.0 24365.0 22117.0 24682.0 g 0 0 0 16852.0 1660.0 291.0 708.0 353.0 4340.0 735.0 605.0 205.0 t 0 0 0 1523.0 1416.0 292.0 413.0 142.0 982.0 255.0 429.0 546.0
MA1153.2_rc_shift0 (Smad4_rc)				; oligos_7nt_mkv1_m2 versus MA1153.2_rc (Smad4_rc); m=2/3; ncol2=7; w=0; offset=0; strand=R; shift=0; score=0.467577; CyAGACr----- ; cor=; Ncor= a 0.0 0.0 1000.0 0.0 1000.0 0.0 581.0 0 0 0 0 0 c 1000.0 404.0 0.0 0.0 0.0 1000.0 81.0 0 0 0 0 0 g 0.0 0.0 0.0 1000.0 0.0 0.0 250.0 0 0 0 0 0 t 0.0 596.0 0.0 0.0 0.0 0.0 88.0 0 0 0 0 0
MA1964.2_shift0 (SMAD2)				; oligos_7nt_mkv1_m2 versus MA1964.2 (SMAD2); m=3/3; ncol2=6; w=0; offset=0; strand=D; shift=0; score=0.413237; CCAGAC------ ; cor=; Ncor= a 42.0 6.0 3447.0 7.0 3747.0 1.0 0 0 0 0 0 0 c 3610.0 3484.0 149.0 30.0 0.0 3757.0 0 0 0 0 0 0 g 86.0 171.0 154.0 3703.0 0.0 0.0 0 0 0 0 0 0 t 20.0 97.0 8.0 18.0 11.0 0.0 0 0 0 0 0 0