; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184320_2025-05-16.184320_WEQUPM/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices.tf -from transfac -to tab -return counts -return sites -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184320_2025-05-16.184320_WEQUPM/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184320_2025-05-16.184320_WEQUPM/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices.tf
; Input format        	transfac
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184320_2025-05-16.184320_WEQUPM/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices.txt
; Output format       	tab
; pseudo-weight       	1
a	8	8	3	0	0	0	0	1	3	1	1	4	10	8
c	20	14	11	42	46	44	44	0	42	43	43	14	18	23
g	7	20	21	3	0	2	2	45	2	2	3	19	14	13
t	12	5	12	2	1	1	1	1	0	1	0	10	5	3
//
; Sites	47
>site_0
CGGCCCCGCCCACG
>site_1
AGGCCCCGCCCCCT
>site_2
TGGCCCCGCCCTAC
>site_3
TATCCCCGCTCTAA
>site_4
ACCCCCCGCCCCGG
>site_5
CAGCCCCGACCGGC
>site_6
CGGCCCCGCCCCAA
>site_7
CGGCCCCGCCCCAA
>site_8
CAGCCCCGACCGGC
>site_9
TAGCCCCGCCCTAG
>site_10
TATCCCCGCCCTAA
>site_11
TGACCCCGCCCCAG
>site_12
AGGCCCCGCCCTCC
>site_13
TGGCCCCGCCCTAG
>site_14
AGGCCCCGCCCCCT
>site_15
CGGCCCCGCCCACA
>site_16
CCGGCCCGCCCGCA
>site_17
GTCCCCGGCCCGCC
>site_18
AGTCCCCGGCCCGC
>site_19
AGGCTCCGCCCGAC
>site_20
ACCCCCCGCCCGGG
>site_21
CAACCCCACCCGCA
>site_22
GCGCCCCGCCGCGC
>site_23
TCTCCCCGCCACCC
>site_24
TGTGCCCGCCCGGC
>site_25
CTTCCCCGCCCAGC
>site_26
TCTCCCCGCCCTTG
>site_27
ACGCCCCGCACCGC
>site_28
GCCCCCCGCCCGAC
>site_29
GGGCCCCGCCCGCA
>site_30
CCGCCCTGCCCGGC
>site_31
CGACCCCTCCCGCC
>site_32
CCCTCCCGCCCGTC
>site_33
CACCCCCGCGCGCC
>site_34
CTGCCCCGCGCGGG
>site_35
GCTCCGCGCCCGCC
>site_36
TGCCCCCGCCCTTC
>site_37
CTTCCCCGCCCTTC
>site_38
CGCGCCCGCCCGCG
>site_39
TGCCCGCGCCCGCC
>site_40
CCGCCCCGCCGCCG
>site_41
GGTCCCCGCCGCGG
>site_42
CCGTCCCGCCCCGG
>site_43
CTCCCCGGCCCGTC
>site_44
TCTCCCCGGCCCGT
>site_45
CGCCCTCGCCCTCG
>site_46
GATCCCCGACCACC
a	4	5	21	19	22	1	18	1	4	6
c	9	6	1	1	1	1	2	0	2	3
g	6	6	1	1	0	2	3	1	7	2
t	4	6	0	2	0	19	0	21	10	12
//
; Sites	23
>site_0
GGAAATCTTA
>site_1
ACAAATAGGA
>site_2
CCAAATGTTA
>site_3
CTAAATATCT
>site_4
TTAGATATTT
>site_5
CTAAATATAT
>site_6
AAATATATGT
>site_7
ACATATATTT
>site_8
GAACATATAT
>site_9
TGAAAGATGC
>site_10
CTAAAGATTT
>site_11
CTAACTATGA
>site_12
GCAAATATTC
>site_13
GTGAATATTT
>site_14
CCAAATCTGT
>site_15
CCAAATGTCT
>site_16
TAAAACATGC
>site_17
CACAATATTT
>site_18
TAAAATATTG
>site_19
CGAAATATGA
>site_20
GGAAAAATTA
>site_21
GGAAATGTAG
>site_22
AGAAATAAAT
a	8	3	16	0	18	0	17	0	18	1	7	2	5
c	5	6	1	2	0	14	0	18	0	16	3	12	5
g	2	6	1	15	0	3	1	0	0	1	4	4	4
t	3	3	0	1	0	1	0	0	0	0	4	0	4
//
; Sites	18
>site_0
ACATACACACACT
>site_1
ATACACACACTGG
>site_2
CTGGACACACGAG
>site_3
CCAGACACACACT
>site_4
AGACACACACTGT
>site_5
TTAGAGACACACC
>site_6
AGAGACACACCAA
>site_7
TGAGAGACACACG
>site_8
AGAGACACACGCC
>site_9
TCAGACACACCCC
>site_10
CCAGACACACACA
>site_11
ACAGAGACACACG
>site_12
AGAGACACACGCA
>site_13
ACAGACACACTCA
>site_14
CAAGACACAGTCC
>site_15
GGAGATACACCCC
>site_16
GAAGACACAAAGT
>site_17
CACGACGCACGGA
a	6	9	37	0	0	0	0	0	8	2
c	20	17	0	2	0	37	0	0	9	10
g	6	10	0	35	37	0	0	36	16	20
t	5	1	0	0	0	0	37	1	4	5
//
; Sites	37
>site_0
GGAGGCTGGG
>site_1
ACAGGCTGGG
>site_2
CCAGGCTGGG
>site_3
AGAGGCTGTC
>site_4
CCAGGCTGCC
>site_5
ACAGGCTGAG
>site_6
CGAGGCTGAT
>site_7
CCAGGCTGTG
>site_8
GCAGGCTGTC
>site_9
CAACGCTGCG
>site_10
GCAGGCTGCG
>site_11
CAACGCTGCG
>site_12
CAAGGCTGGG
>site_13
GAAGGCTGGT
>site_14
CCAGGCTGGC
>site_15
CCAGGCTGTC
>site_16
CCAGGCTGAG
>site_17
CCAGGCTGGG
>site_18
CCAGGCTGGG
>site_19
TCAGGCTGGC
>site_20
TGAGGCTGAT
>site_21
TCAGGCTGAC
>site_22
CGAGGCTGAG
>site_23
CAAGGCTGGG
>site_24
AAAGGCTGGA
>site_25
CAAGGCTGGC
>site_26
ATAGGCTGAG
>site_27
GAAGGCTGCT
>site_28
TGAGGCTGCT
>site_29
CCAGGCTGGC
>site_30
GAAGGCTGGG
>site_31
CGAGGCTGGG
>site_32
CGAGGCTTCG
>site_33
AGAGGCTGAG
>site_34
TCAGGCTGGG
>site_35
CCAGGCTGCC
>site_36
CGAGGCTGCA
a	7	5	1	0	0	0	3	0	7	5
c	10	13	33	34	34	0	0	34	13	14
g	10	12	0	0	0	34	31	0	11	8
t	7	4	0	0	0	0	0	0	3	7
//
; Sites	34
>site_0
CCCCCGGCGC
>site_1
CTCCCGGCAA
>site_2
GGCCCGGCTT
>site_3
GCCCCGGCCC
>site_4
GCCCCGGCCC
>site_5
GGCCCGGCTT
>site_6
GCCCCGGCAG
>site_7
TCCCCGGCCC
>site_8
TGCCCGGCGC
>site_9
AGCCCGGCCA
>site_10
CGCCCGACCG
>site_11
ACCCCGGCAC
>site_12
CGCCCGGCAC
>site_13
AACCCGGCCA
>site_14
AACCCGACGG
>site_15
GGCCCGGCGA
>site_16
ACCCCGGCGC
>site_17
CGCCCGACGC
>site_18
CTCCCGGCAG
>site_19
ACCCCGGCGC
>site_20
CTCCCGGCGT
>site_21
TGCCCGGCCT
>site_22
GACCCGGCCG
>site_23
TACCCGGCGT
>site_24
CCCCCGGCCT
>site_25
TCCCCGGCAC
>site_26
CGACCGGCGG
>site_27
AGCCCGGCGG
>site_28
GCCCCGGCCT
>site_29
TCCCCGGCCC
>site_30
GACCCGGCCA
>site_31
TCCCCGGCCC
>site_32
GGCCCGGCAG
>site_33
CTCCCGGCTC
; Host name	rsat
; Job started	2025-05-16.184333
; Job done	2025-05-16.184333
; Seconds	0.12
;	user	0.12
;	system	0.01
;	cuser	0
;	csystem	0
