position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title Pericytes_MDD_off_on_drugs_down -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 53 Sum of sequence lengths 43419 Min sequence length 0 Max sequence length 1000 Average sequence length 819 Possible positions 43419 Sequences: # length ID 1 599 chr5:159524959-159525557 2 1000 chr18:50748190-50749214 3 1000 chr3:160718946-160719949 4 1000 chr7:2670423-2671712 5 1000 chr17:3501368-3504522 6 921 chr5:116388351-116389271 7 1000 chr18:79933563-79935788 8 632 chr22:29091715-29092346 9 678 chr16:87849853-87850530 10 615 chr1:203083871-203084485 11 1000 chr2:133755248-133756275 12 860 chr7:56130625-56131484 13 828 chr18:68549011-68549838 14 471 chr4:158008497-158008967 15 406 chr13:99000150-99000555 16 608 chr11:131906827-131907434 17 1000 chr11:106249185-106250462 18 628 chr19:5403833-5404460 19 857 chr2:66853442-66854298 20 1000 chr1:35714936-35716001 21 1000 chr2:43067504-43069193 22 721 chr5:150492333-150493053 23 1000 chr11:95433991-95436078 24 1000 chr5:72120945-72123083 25 1000 chr7:148663774-148664820 26 942 chr3:59857379-59858320 27 783 chr19:2390972-2391754 28 693 chr3:42751376-42752068 29 913 chr1:226824772-226825684 30 1000 chr20:57921139-57923794 31 1000 chr11:129375144-129376270 32 783 chr9:15142517-15143299 33 475 chr17:30227694-30228168 34 1000 chr12:24413697-24414924 35 836 chr18:62377204-62378039 36 504 chr11:36049833-36050336 37 1000 chr11:15569376-15570493 38 532 chr2:28321311-28321842 39 642 chr16:4339620-4340261 40 1000 chr1:65277615-65279375 41 691 chr7:157329175-157329865 42 742 chr17:77928782-77929523 43 611 chr14:32724775-32725385 44 1000 chr1:17652862-17654227 45 1000 chr4:176435138-176436959 46 1000 chr15:99711105-99712282 47 551 chr10:71091913-71092463 48 1000 chr5:132064352-132065705 49 820 chr1:24830397-24831216 50 690 chr15:81284266-81284955 51 1000 chr4:157221441-157223200 52 896 chr12:131624328-131625223 53 491 chr7:35995139-35995629 Oligonucleotide statistics: Total occurrences 43108 Position interval parameters: Position interval 20 Number of windows 50 Total positions 43419 Degrees of freedom 49 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -25 [-499,-480] -489.5 22 440 2 -24 [-479,-460] -469.5 24 453 3 -23 [-459,-440] -449.5 26 505 4 -22 [-439,-420] -429.5 28 539 5 -21 [-419,-400] -409.5 31 602 6 -20 [-399,-380] -389.5 33 644 7 -19 [-379,-360] -369.5 35 673 8 -18 [-359,-340] -349.5 38 719 9 -17 [-339,-320] -329.5 40 782 10 -16 [-319,-300] -309.5 45 848 11 -15 [-299,-280] -289.5 46 920 12 -14 [-279,-260] -269.5 48 942 13 -13 [-259,-240] -249.5 50 978 14 -12 [-239,-220] -229.5 52 1034 15 -11 [-219,-200] -209.5 53 1044 16 -10 [-199,-180] -189.5 53 1060 17 -9 [-179,-160] -169.5 53 1060 18 -8 [-159,-140] -149.5 53 1060 19 -7 [-139,-120] -129.5 53 1060 20 -6 [-119,-100] -109.5 53 1060 21 -5 [-99,-80] -89.5 53 1060 22 -4 [-79,-60] -69.5 53 1060 23 -3 [-59,-40] -49.5 53 1060 24 -2 [-39,-20] -29.5 53 1060 25 -1 [-19,0] -9.5 53 1060 26 0 [1,20] 10.5 53 1060 27 1 [21,40] 30.5 53 1060 28 2 [41,60] 50.5 53 1060 29 3 [61,80] 70.5 53 1060 30 4 [81,100] 90.5 53 1060 31 5 [101,120] 110.5 53 1060 32 6 [121,140] 130.5 53 1060 33 7 [141,160] 150.5 53 1060 34 8 [161,180] 170.5 53 1060 35 9 [181,200] 190.5 53 1060 36 10 [201,220] 210.5 53 1042 37 11 [221,240] 230.5 52 1032 38 12 [241,260] 250.5 50 977 39 13 [261,280] 270.5 48 941 40 14 [281,300] 290.5 46 919 41 15 [301,320] 310.5 45 846 42 16 [321,340] 330.5 39 778 43 17 [341,360] 350.5 38 715 44 18 [361,380] 370.5 34 670 45 19 [381,400] 390.5 33 642 46 20 [401,420] 410.5 31 602 47 21 [421,440] 430.5 28 538 48 22 [441,460] 450.5 26 504 49 23 [461,480] 470.5 23 450 50 24 [481,500] 490.5 22 440 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -489.5 occurrences in window 1 [-499,-480] 11 -469.5 occurrences in window 2 [-479,-460] 12 -449.5 occurrences in window 3 [-459,-440] 13 -429.5 occurrences in window 4 [-439,-420] 14 -409.5 occurrences in window 5 [-419,-400] 15 -389.5 occurrences in window 6 [-399,-380] 16 -369.5 occurrences in window 7 [-379,-360] 17 -349.5 occurrences in window 8 [-359,-340] 18 -329.5 occurrences in window 9 [-339,-320] 19 -309.5 occurrences in window 10 [-319,-300] 20 -289.5 occurrences in window 11 [-299,-280] 21 -269.5 occurrences in window 12 [-279,-260] 22 -249.5 occurrences in window 13 [-259,-240] 23 -229.5 occurrences in window 14 [-239,-220] 24 -209.5 occurrences in window 15 [-219,-200] 25 -189.5 occurrences in window 16 [-199,-180] 26 -169.5 occurrences in window 17 [-179,-160] 27 -149.5 occurrences in window 18 [-159,-140] 28 -129.5 occurrences in window 19 [-139,-120] 29 -109.5 occurrences in window 20 [-119,-100] 30 -89.5 occurrences in window 21 [-99,-80] 31 -69.5 occurrences in window 22 [-79,-60] 32 -49.5 occurrences in window 23 [-59,-40] 33 -29.5 occurrences in window 24 [-39,-20] 34 -9.5 occurrences in window 25 [-19,0] 35 10.5 occurrences in window 26 [1,20] 36 30.5 occurrences in window 27 [21,40] 37 50.5 occurrences in window 28 [41,60] 38 70.5 occurrences in window 29 [61,80] 39 90.5 occurrences in window 30 [81,100] 40 110.5 occurrences in window 31 [101,120] 41 130.5 occurrences in window 32 [121,140] 42 150.5 occurrences in window 33 [141,160] 43 170.5 occurrences in window 34 [161,180] 44 190.5 occurrences in window 35 [181,200] 45 210.5 occurrences in window 36 [201,220] 46 230.5 occurrences in window 37 [221,240] 47 250.5 occurrences in window 38 [241,260] 48 270.5 occurrences in window 39 [261,280] 49 290.5 occurrences in window 40 [281,300] 50 310.5 occurrences in window 41 [301,320] 51 330.5 occurrences in window 42 [321,340] 52 350.5 occurrences in window 43 [341,360] 53 370.5 occurrences in window 44 [361,380] 54 390.5 occurrences in window 45 [381,400] 55 410.5 occurrences in window 46 [401,420] 56 430.5 occurrences in window 47 [421,440] 57 450.5 occurrences in window 48 [441,460] 58 470.5 occurrences in window 49 [461,480] 59 490.5 occurrences in window 50 [481,500]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 | 290.5 | 310.5 | 330.5 | 350.5 | 370.5 | 390.5 | 410.5 | 430.5 | 450.5 | 470.5 | 490.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| a | a | 11102 | 87.1 | 49 | 6.5e-04 | 0.0026 | 2.58 | 1 | 111 | 122 | 135 | 143 | 162 | 189 | 192 | 212 | 228 | 229 | 235 | 240 | 267 | 271 | 285 | 291 | 287 | 263 | 278 | 294 | 299 | 325 | 274 | 275 | 255 | 254 | 290 | 278 | 287 | 227 | 261 | 238 | 274 | 238 | 248 | 241 | 228 | 220 | 241 | 196 | 226 | 192 | 162 | 178 | 150 | 151 | 134 | 113 | 121 | 92 |
| c | c | 10124 | 67.2 | 49 | 4.3e-02 | 0.17 | 0.76 | 2 | 93 | 99 | 119 | 127 | 120 | 134 | 144 | 129 | 168 | 193 | 221 | 218 | 215 | 232 | 230 | 233 | 244 | 250 | 256 | 218 | 240 | 232 | 255 | 242 | 258 | 240 | 233 | 236 | 247 | 256 | 232 | 280 | 244 | 240 | 279 | 272 | 255 | 271 | 236 | 232 | 219 | 212 | 182 | 144 | 141 | 131 | 129 | 125 | 99 | 119 |
| g | g | 10738 | 56.3 | 49 | 2.2e-01 | 0.88 | 0.05 | 3 | 112 | 114 | 133 | 146 | 172 | 162 | 140 | 183 | 153 | 198 | 206 | 231 | 241 | 243 | 242 | 277 | 255 | 246 | 248 | 268 | 266 | 277 | 264 | 298 | 254 | 274 | 263 | 248 | 246 | 262 | 286 | 262 | 283 | 287 | 217 | 228 | 263 | 253 | 249 | 235 | 206 | 188 | 176 | 184 | 160 | 157 | 133 | 123 | 114 | 112 |
| t | t | 11144 | 52.8 | 49 | 3.3e-01 | 1.3 | -0.12 | 4 | 124 | 118 | 118 | 123 | 148 | 159 | 197 | 188 | 213 | 194 | 233 | 246 | 249 | 268 | 273 | 259 | 274 | 301 | 278 | 280 | 255 | 226 | 267 | 245 | 293 | 286 | 254 | 277 | 260 | 295 | 277 | 280 | 259 | 285 | 291 | 264 | 271 | 233 | 215 | 256 | 195 | 186 | 195 | 164 | 191 | 163 | 142 | 143 | 116 | 117 |
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