One-to-n alignments
Command: compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m2_shift0 ; 3 matrices ; sort_field=Ncor
| Matrix name | Aligned logos | cor |
Ncor |
Aligned matrices |
|---|
| oligos_6nt_mkv2_m2_shift0 (oligos_6nt_mkv2_m2) |
 |
|
|
; oligos_6nt_mkv2_m2; m=0 (reference); ncol1=10; shift=0; ncol=10; ssGCGCGCss
; Alignment reference
a 20 22 3 7 3 5 4 4 18 17
c 38 49 9 107 8 109 7 110 36 49
g 50 38 109 7 109 8 107 8 49 38
t 17 16 4 4 5 3 7 3 22 21
|
| MA0632.3_shift0 (TCFL5) |
 |
|
|
; oligos_6nt_mkv2_m2 versus MA0632.3 (TCFL5); m=1/2; ncol2=8; w=0; offset=0; strand=D; shift=0; score=0.634809; kCrCGCGC--
; cor=; Ncor=
a 2810.0 0.0 72543.0 0.0 1566.0 1765.0 3520.0 1593.0 0 0
c 10582.0 72543.0 0.0 72543.0 0.0 57092.0 657.0 72543.0 0 0
g 22297.0 0.0 29710.0 0.0 72543.0 0.0 72543.0 4594.0 0 0
t 36854.0 0.0 9359.0 1643.0 0.0 15451.0 0.0 635.0 0 0
|
| MA1650.2_shift2 (ZBTB14) |
 |
|
|
; oligos_6nt_mkv2_m2 versus MA1650.2 (ZBTB14); m=2/2; ncol2=8; w=0; offset=2; strand=D; shift=2; score=0.569266; --CCGCGCAC
; cor=; Ncor=
a 0 0 335.0 41.0 93.0 68.0 132.0 56.0 4500.0 99.0
c 0 0 3525.0 4292.0 294.0 4078.0 305.0 4178.0 37.0 3674.0
g 0 0 614.0 155.0 4098.0 319.0 4043.0 261.0 10.0 651.0
t 0 0 73.0 59.0 62.0 82.0 67.0 52.0 0.0 123.0
|