One-to-n alignments

Command: compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/discovered_motifs/oligos_6nt_mkv2_m3/peak-motifs_oligos_6nt_mkv2_m3.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/discovered_motifs/oligos_6nt_mkv2_m3/peak-motifs_oligos_6nt_mkv2_m3_vs_db_JASPAR2024_CORE_vertebrates_non-redundant

One-to-n matrix alignment; reference matrix: oligos_6nt_mkv2_m3_shift1 ; 16 matrices ; sort_field=Ncor

Matrix name Aligned logos cor Ncor Aligned matrices
oligos_6nt_mkv2_m3_shift1 (oligos_6nt_mkv2_m3)
; oligos_6nt_mkv2_m3; m=0 (reference); ncol1=11; shift=1; ncol=12; -rgcCCCAGCys ; Alignment reference a 0 36 34 16 3 3 5 123 8 1 32 26 c 0 34 33 86 131 124 124 6 2 133 44 51 g 0 46 41 16 3 9 4 8 124 1 21 35 t 0 21 29 19 0 1 4 0 3 2 40 25

MA2125.1_shift2 (Zfp809)
; oligos_6nt_mkv2_m3 versus MA2125.1 (Zfp809); m=1/15; ncol2=9; w=0; offset=1; strand=D; shift=2; score=0.676867; --wTCCCAGCc- ; cor=; Ncor= a 0 0 828.0 23.0 15.0 20.0 10.0 1529.0 32.0 287.0 217.0 0 c 0 0 66.0 41.0 1607.0 1610.0 1621.0 26.0 35.0 1218.0 1091.0 0 g 0 0 81.0 23.0 18.0 14.0 16.0 73.0 1572.0 99.0 115.0 0 t 0 0 690.0 1578.0 25.0 21.0 18.0 37.0 26.0 61.0 242.0 0

MA2341.1_shift4 (FEZF2)
; oligos_6nt_mkv2_m3 versus MA2341.1 (FEZF2); m=2/15; ncol2=8; w=0; offset=3; strand=D; shift=4; score=0.608258; ----CCCAGCCT ; cor=; Ncor= a 0 0 0 0 17.0 5.0 4.0 231.0 6.0 8.0 7.0 14.0 c 0 0 0 0 202.0 206.0 258.0 15.0 8.0 224.0 247.0 10.0 g 0 0 0 0 10.0 9.0 0.0 14.0 251.0 28.0 2.0 8.0 t 0 0 0 0 36.0 45.0 3.0 5.0 0.0 5.0 9.0 233.0

MA0039.5_shift3 (KLF4)
; oligos_6nt_mkv2_m3 versus MA0039.5 (KLF4); m=3/15; ncol2=8; w=0; offset=2; strand=D; shift=3; score=0.528666; ---CCCCACCC- ; cor=; Ncor= a 0 0 0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 0 c 0 0 0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 0 g 0 0 0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 0 t 0 0 0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 0

MA1615.2_rc_shift0 (Plagl1_rc)
; oligos_6nt_mkv2_m3 versus MA1615.2_rc (Plagl1_rc); m=4/15; ncol2=8; w=-1; offset=-1; strand=R; shift=0; score=0.486745; TGGCCCCa---- ; cor=; Ncor= a 371.0 398.0 321.0 142.0 183.0 323.0 118.0 9425.0 0 0 0 0 c 1032.0 422.0 313.0 13495.0 13517.0 12261.0 13595.0 1338.0 0 0 0 0 g 686.0 13152.0 12737.0 336.0 266.0 356.0 243.0 1471.0 0 0 0 0 t 12064.0 181.0 782.0 180.0 187.0 1213.0 197.0 1919.0 0 0 0 0

MA1629.2_shift4 (Zic2)
; oligos_6nt_mkv2_m3 versus MA1629.2 (Zic2); m=5/15; ncol2=9; w=0; offset=3; strand=D; shift=4; score=0.486492; ----CaCAGCAG ; cor=; Ncor= a 0 0 0 0 1161.0 6888.0 135.0 11074.0 140.0 80.0 10625.0 192.0 c 0 0 0 0 9933.0 1765.0 11476.0 391.0 228.0 11272.0 118.0 133.0 g 0 0 0 0 585.0 829.0 188.0 186.0 11484.0 269.0 735.0 11184.0 t 0 0 0 0 240.0 2437.0 120.0 268.0 67.0 298.0 441.0 410.0

MA0056.3_shift0 (MZF1)
; oligos_6nt_mkv2_m3 versus MA0056.3 (MZF1); m=6/15; ncol2=8; w=-1; offset=-1; strand=D; shift=0; score=0.468842; AATCCCCA---- ; cor=; Ncor= a 5855.0 7149.0 106.0 100.0 135.0 111.0 117.0 6036.0 0 0 0 0 c 1016.0 426.0 56.0 7949.0 7939.0 7919.0 7673.0 611.0 0 0 0 0 g 999.0 385.0 98.0 100.0 54.0 58.0 83.0 484.0 0 0 0 0 t 372.0 282.0 7982.0 93.0 114.0 154.0 369.0 1111.0 0 0 0 0

MA1997.2_shift6 (Olig2)
; oligos_6nt_mkv2_m3 versus MA1997.2 (Olig2); m=7/15; ncol2=6; w=0; offset=5; strand=D; shift=6; score=0.450051; ------CAGCTG ; cor=; Ncor= a 0 0 0 0 0 0 10.0 59733.0 14.0 41.0 0.0 50.0 c 0 0 0 0 0 0 60968.0 668.0 18.0 61069.0 741.0 114.0 g 0 0 0 0 0 0 114.0 741.0 61069.0 18.0 668.0 60968.0 t 0 0 0 0 0 0 50.0 0.0 41.0 14.0 59733.0 10.0

MA0633.3_rc_shift6 (Twist2_rc)
; oligos_6nt_mkv2_m3 versus MA0633.3_rc (Twist2_rc); m=8/15; ncol2=6; w=0; offset=5; strand=R; shift=6; score=0.449658; ------CAGCTG ; cor=; Ncor= a 0 0 0 0 0 0 15.0 48918.0 9.0 21.0 0.0 60.0 c 0 0 0 0 0 0 49473.0 342.0 16.0 49583.0 369.0 81.0 g 0 0 0 0 0 0 81.0 369.0 49583.0 16.0 345.0 49473.0 t 0 0 0 0 0 0 60.0 0.0 21.0 9.0 48915.0 15.0

MA1993.2_shift6 (Neurod2)
; oligos_6nt_mkv2_m3 versus MA1993.2 (Neurod2); m=9/15; ncol2=6; w=0; offset=5; strand=D; shift=6; score=0.449605; ------CAGCTG ; cor=; Ncor= a 0 0 0 0 0 0 14.0 53280.0 8.0 17.0 0.0 39.0 c 0 0 0 0 0 0 53913.0 310.0 15.0 53984.0 434.0 58.0 g 0 0 0 0 0 0 58.0 434.0 53984.0 15.0 310.0 53913.0 t 0 0 0 0 0 0 39.0 0.0 17.0 8.0 53280.0 14.0

MA1578.2_shift1 (VEZF1)
; oligos_6nt_mkv2_m3 versus MA1578.2 (VEZF1); m=10/15; ncol2=6; w=0; offset=0; strand=D; shift=1; score=0.449296; -CCCCCC----- ; cor=; Ncor= a 0 71.0 1.0 4.0 2.0 6.0 10.0 0 0 0 0 0 c 0 790.0 997.0 995.0 997.0 989.0 977.0 0 0 0 0 0 g 0 137.0 0.0 0.0 0.0 0.0 3.0 0 0 0 0 0 t 0 0.0 0.0 0.0 0.0 4.0 8.0 0 0 0 0 0

MA1635.2_shift6 (BHLHE22)
; oligos_6nt_mkv2_m3 versus MA1635.2 (BHLHE22); m=11/15; ncol2=6; w=0; offset=5; strand=D; shift=6; score=0.448804; ------CAGCTG ; cor=; Ncor= a 0 0 0 0 0 0 0.0 18267.0 1.0 14.0 0.0 14.0 c 0 0 0 0 0 0 18331.0 37.0 53.0 18288.0 52.0 15.0 g 0 0 0 0 0 0 11.0 52.0 18288.0 53.0 37.0 18327.0 t 0 0 0 0 0 0 14.0 0.0 14.0 1.0 18267.0 0.0

MA0521.3_shift6 (Tcf12)
; oligos_6nt_mkv2_m3 versus MA0521.3 (Tcf12); m=12/15; ncol2=6; w=0; offset=5; strand=D; shift=6; score=0.444692; ------CAGCTG ; cor=; Ncor= a 0 0 0 0 0 0 367.0 72283.0 836.0 1565.0 341.0 549.0 c 0 0 0 0 0 0 72674.0 739.0 1814.0 69780.0 632.0 402.0 g 0 0 0 0 0 0 404.0 632.0 69780.0 1814.0 738.0 72670.0 t 0 0 0 0 0 0 550.0 341.0 1565.0 836.0 72284.0 374.0

MA0500.3_shift5 (MYOG)
; oligos_6nt_mkv2_m3 versus MA0500.3 (MYOG); m=13/15; ncol2=8; w=0; offset=4; strand=D; shift=5; score=0.410842; -----rCAGCTG ; cor=; Ncor= a 0 0 0 0 0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 c 0 0 0 0 0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 g 0 0 0 0 0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 t 0 0 0 0 0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0

MA1628.2_shift6 (Zic1::Zic2)
; oligos_6nt_mkv2_m3 versus MA1628.2 (Zic1::Zic2); m=14/15; ncol2=7; w=0; offset=5; strand=D; shift=6; score=0.408393; ------CAGCAG ; cor=; Ncor= a 0 0 0 0 0 0 29.0 9238.0 96.0 75.0 8950.0 11.0 c 0 0 0 0 0 0 9594.0 384.0 195.0 9293.0 311.0 512.0 g 0 0 0 0 0 0 106.0 266.0 9527.0 96.0 627.0 9279.0 t 0 0 0 0 0 0 163.0 4.0 74.0 428.0 4.0 90.0

MA0697.3_shift6 (Zic3)
; oligos_6nt_mkv2_m3 versus MA0697.3 (Zic3); m=15/15; ncol2=7; w=0; offset=5; strand=D; shift=6; score=0.408228; ------CAGCAG ; cor=; Ncor= a 0 0 0 0 0 0 345.0 23947.0 331.0 354.0 22980.0 393.0 c 0 0 0 0 0 0 25035.0 872.0 670.0 24272.0 568.0 500.0 g 0 0 0 0 0 0 460.0 759.0 24907.0 756.0 1768.0 24314.0 t 0 0 0 0 0 0 334.0 596.0 266.0 792.0 858.0 967.0

Matrix name	Aligned logos	cor	Ncor	Aligned matrices
oligos_6nt_mkv2_m3_shift1 (oligos_6nt_mkv2_m3)				; oligos_6nt_mkv2_m3; m=0 (reference); ncol1=11; shift=1; ncol=12; -rgcCCCAGCys ; Alignment reference a 0 36 34 16 3 3 5 123 8 1 32 26 c 0 34 33 86 131 124 124 6 2 133 44 51 g 0 46 41 16 3 9 4 8 124 1 21 35 t 0 21 29 19 0 1 4 0 3 2 40 25
MA2125.1_shift2 (Zfp809)				; oligos_6nt_mkv2_m3 versus MA2125.1 (Zfp809); m=1/15; ncol2=9; w=0; offset=1; strand=D; shift=2; score=0.676867; --wTCCCAGCc- ; cor=; Ncor= a 0 0 828.0 23.0 15.0 20.0 10.0 1529.0 32.0 287.0 217.0 0 c 0 0 66.0 41.0 1607.0 1610.0 1621.0 26.0 35.0 1218.0 1091.0 0 g 0 0 81.0 23.0 18.0 14.0 16.0 73.0 1572.0 99.0 115.0 0 t 0 0 690.0 1578.0 25.0 21.0 18.0 37.0 26.0 61.0 242.0 0
MA2341.1_shift4 (FEZF2)				; oligos_6nt_mkv2_m3 versus MA2341.1 (FEZF2); m=2/15; ncol2=8; w=0; offset=3; strand=D; shift=4; score=0.608258; ----CCCAGCCT ; cor=; Ncor= a 0 0 0 0 17.0 5.0 4.0 231.0 6.0 8.0 7.0 14.0 c 0 0 0 0 202.0 206.0 258.0 15.0 8.0 224.0 247.0 10.0 g 0 0 0 0 10.0 9.0 0.0 14.0 251.0 28.0 2.0 8.0 t 0 0 0 0 36.0 45.0 3.0 5.0 0.0 5.0 9.0 233.0
MA0039.5_shift3 (KLF4)				; oligos_6nt_mkv2_m3 versus MA0039.5 (KLF4); m=3/15; ncol2=8; w=0; offset=2; strand=D; shift=3; score=0.528666; ---CCCCACCC- ; cor=; Ncor= a 0 0 0 2465.0 2105.0 7021.0 1173.0 45602.0 852.0 1617.0 1202.0 0 c 0 0 0 49209.0 47865.0 45405.0 52875.0 161.0 52366.0 51112.0 51045.0 0 g 0 0 0 1583.0 1214.0 1422.0 793.0 6598.0 1470.0 1870.0 1005.0 0 t 0 0 0 2560.0 4633.0 1969.0 976.0 3456.0 1129.0 1218.0 2565.0 0
MA1615.2_rc_shift0 (Plagl1_rc)				; oligos_6nt_mkv2_m3 versus MA1615.2_rc (Plagl1_rc); m=4/15; ncol2=8; w=-1; offset=-1; strand=R; shift=0; score=0.486745; TGGCCCCa---- ; cor=; Ncor= a 371.0 398.0 321.0 142.0 183.0 323.0 118.0 9425.0 0 0 0 0 c 1032.0 422.0 313.0 13495.0 13517.0 12261.0 13595.0 1338.0 0 0 0 0 g 686.0 13152.0 12737.0 336.0 266.0 356.0 243.0 1471.0 0 0 0 0 t 12064.0 181.0 782.0 180.0 187.0 1213.0 197.0 1919.0 0 0 0 0
MA1629.2_shift4 (Zic2)				; oligos_6nt_mkv2_m3 versus MA1629.2 (Zic2); m=5/15; ncol2=9; w=0; offset=3; strand=D; shift=4; score=0.486492; ----CaCAGCAG ; cor=; Ncor= a 0 0 0 0 1161.0 6888.0 135.0 11074.0 140.0 80.0 10625.0 192.0 c 0 0 0 0 9933.0 1765.0 11476.0 391.0 228.0 11272.0 118.0 133.0 g 0 0 0 0 585.0 829.0 188.0 186.0 11484.0 269.0 735.0 11184.0 t 0 0 0 0 240.0 2437.0 120.0 268.0 67.0 298.0 441.0 410.0
MA0056.3_shift0 (MZF1)				; oligos_6nt_mkv2_m3 versus MA0056.3 (MZF1); m=6/15; ncol2=8; w=-1; offset=-1; strand=D; shift=0; score=0.468842; AATCCCCA---- ; cor=; Ncor= a 5855.0 7149.0 106.0 100.0 135.0 111.0 117.0 6036.0 0 0 0 0 c 1016.0 426.0 56.0 7949.0 7939.0 7919.0 7673.0 611.0 0 0 0 0 g 999.0 385.0 98.0 100.0 54.0 58.0 83.0 484.0 0 0 0 0 t 372.0 282.0 7982.0 93.0 114.0 154.0 369.0 1111.0 0 0 0 0
MA1997.2_shift6 (Olig2)				; oligos_6nt_mkv2_m3 versus MA1997.2 (Olig2); m=7/15; ncol2=6; w=0; offset=5; strand=D; shift=6; score=0.450051; ------CAGCTG ; cor=; Ncor= a 0 0 0 0 0 0 10.0 59733.0 14.0 41.0 0.0 50.0 c 0 0 0 0 0 0 60968.0 668.0 18.0 61069.0 741.0 114.0 g 0 0 0 0 0 0 114.0 741.0 61069.0 18.0 668.0 60968.0 t 0 0 0 0 0 0 50.0 0.0 41.0 14.0 59733.0 10.0
MA0633.3_rc_shift6 (Twist2_rc)				; oligos_6nt_mkv2_m3 versus MA0633.3_rc (Twist2_rc); m=8/15; ncol2=6; w=0; offset=5; strand=R; shift=6; score=0.449658; ------CAGCTG ; cor=; Ncor= a 0 0 0 0 0 0 15.0 48918.0 9.0 21.0 0.0 60.0 c 0 0 0 0 0 0 49473.0 342.0 16.0 49583.0 369.0 81.0 g 0 0 0 0 0 0 81.0 369.0 49583.0 16.0 345.0 49473.0 t 0 0 0 0 0 0 60.0 0.0 21.0 9.0 48915.0 15.0
MA1993.2_shift6 (Neurod2)				; oligos_6nt_mkv2_m3 versus MA1993.2 (Neurod2); m=9/15; ncol2=6; w=0; offset=5; strand=D; shift=6; score=0.449605; ------CAGCTG ; cor=; Ncor= a 0 0 0 0 0 0 14.0 53280.0 8.0 17.0 0.0 39.0 c 0 0 0 0 0 0 53913.0 310.0 15.0 53984.0 434.0 58.0 g 0 0 0 0 0 0 58.0 434.0 53984.0 15.0 310.0 53913.0 t 0 0 0 0 0 0 39.0 0.0 17.0 8.0 53280.0 14.0
MA1578.2_shift1 (VEZF1)				; oligos_6nt_mkv2_m3 versus MA1578.2 (VEZF1); m=10/15; ncol2=6; w=0; offset=0; strand=D; shift=1; score=0.449296; -CCCCCC----- ; cor=; Ncor= a 0 71.0 1.0 4.0 2.0 6.0 10.0 0 0 0 0 0 c 0 790.0 997.0 995.0 997.0 989.0 977.0 0 0 0 0 0 g 0 137.0 0.0 0.0 0.0 0.0 3.0 0 0 0 0 0 t 0 0.0 0.0 0.0 0.0 4.0 8.0 0 0 0 0 0
MA1635.2_shift6 (BHLHE22)				; oligos_6nt_mkv2_m3 versus MA1635.2 (BHLHE22); m=11/15; ncol2=6; w=0; offset=5; strand=D; shift=6; score=0.448804; ------CAGCTG ; cor=; Ncor= a 0 0 0 0 0 0 0.0 18267.0 1.0 14.0 0.0 14.0 c 0 0 0 0 0 0 18331.0 37.0 53.0 18288.0 52.0 15.0 g 0 0 0 0 0 0 11.0 52.0 18288.0 53.0 37.0 18327.0 t 0 0 0 0 0 0 14.0 0.0 14.0 1.0 18267.0 0.0
MA0521.3_shift6 (Tcf12)				; oligos_6nt_mkv2_m3 versus MA0521.3 (Tcf12); m=12/15; ncol2=6; w=0; offset=5; strand=D; shift=6; score=0.444692; ------CAGCTG ; cor=; Ncor= a 0 0 0 0 0 0 367.0 72283.0 836.0 1565.0 341.0 549.0 c 0 0 0 0 0 0 72674.0 739.0 1814.0 69780.0 632.0 402.0 g 0 0 0 0 0 0 404.0 632.0 69780.0 1814.0 738.0 72670.0 t 0 0 0 0 0 0 550.0 341.0 1565.0 836.0 72284.0 374.0
MA0500.3_shift5 (MYOG)				; oligos_6nt_mkv2_m3 versus MA0500.3 (MYOG); m=13/15; ncol2=8; w=0; offset=4; strand=D; shift=5; score=0.410842; -----rCAGCTG ; cor=; Ncor= a 0 0 0 0 0 7159.0 86.0 21782.0 95.0 167.0 163.0 182.0 c 0 0 0 0 0 2730.0 21988.0 176.0 130.0 21964.0 238.0 102.0 g 0 0 0 0 0 10790.0 101.0 236.0 21963.0 131.0 179.0 21985.0 t 0 0 0 0 0 1678.0 182.0 163.0 169.0 95.0 21777.0 88.0
MA1628.2_shift6 (Zic1::Zic2)				; oligos_6nt_mkv2_m3 versus MA1628.2 (Zic1::Zic2); m=14/15; ncol2=7; w=0; offset=5; strand=D; shift=6; score=0.408393; ------CAGCAG ; cor=; Ncor= a 0 0 0 0 0 0 29.0 9238.0 96.0 75.0 8950.0 11.0 c 0 0 0 0 0 0 9594.0 384.0 195.0 9293.0 311.0 512.0 g 0 0 0 0 0 0 106.0 266.0 9527.0 96.0 627.0 9279.0 t 0 0 0 0 0 0 163.0 4.0 74.0 428.0 4.0 90.0
MA0697.3_shift6 (Zic3)				; oligos_6nt_mkv2_m3 versus MA0697.3 (Zic3); m=15/15; ncol2=7; w=0; offset=5; strand=D; shift=6; score=0.408228; ------CAGCAG ; cor=; Ncor= a 0 0 0 0 0 0 345.0 23947.0 331.0 354.0 22980.0 393.0 c 0 0 0 0 0 0 25035.0 872.0 670.0 24272.0 568.0 500.0 g 0 0 0 0 0 0 460.0 759.0 24907.0 756.0 1768.0 24314.0 t 0 0 0 0 0 0 334.0 596.0 266.0 792.0 858.0 967.0