/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/discovered_motifs/oligos_6nt_mkv2_m4/peak-motifs_oligos_6nt_mkv2_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/discovered_motifs/oligos_6nt_mkv2_m4/peak-motifs_oligos_6nt_mkv2_m4.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/discovered_motifs/oligos_6nt_mkv2_m4/peak-motifs_oligos_6nt_mkv2_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/discovered_motifs/oligos_6nt_mkv2_m4/peak-motifs_oligos_6nt_mkv2_m4.tf
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
 Output files
	prefix       	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/discovered_motifs/oligos_6nt_mkv2_m4/peak-motifs_oligos_6nt_mkv2_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/discovered_motifs/oligos_6nt_mkv2_m4/peak-motifs_oligos_6nt_mkv2_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab
	match_table_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/discovered_motifs/oligos_6nt_mkv2_m4/peak-motifs_oligos_6nt_mkv2_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/discovered_motifs/oligos_6nt_mkv2_m4/peak-motifs_oligos_6nt_mkv2_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/discovered_motifs/oligos_6nt_mkv2_m4/peak-motifs_oligos_6nt_mkv2_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html
	html_index   	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/discovered_motifs/oligos_6nt_mkv2_m4/peak-motifs_oligos_6nt_mkv2_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/discovered_motifs/oligos_6nt_mkv2_m4/peak-motifs_oligos_6nt_mkv2_m4.tf
		file1	1	10	127
	file2	879 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
		file2		1		6		20
		file2		2		14		43
		file2		3		10		25
		file2		4		15		10
		file2		5		10		17
		file2		6		10		18
		file2		7		17		25
		file2		8		15		33
		file2		9		14		16
		file2		10		6		16
		file2		11		15		1369
		...	869 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv2_m4 MA1653.2 oligos_6nt_mkv2_m4 ZNF148 0.854 0.854 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m4 MA1630.3 oligos_6nt_mkv2_m4 ZNF281 0.780 0.780 10 10 10 10 1.0000 1.0000 1.0000 R 0
oligos_6nt_mkv2_m4 MA0685.2 oligos_6nt_mkv2_m4 SP4 0.790 0.711 10 9 9 10 0.9000 0.9000 1.0000 R 0
oligos_6nt_mkv2_m4 MA1961.2 oligos_6nt_mkv2_m4 PATZ1 0.781 0.710 10 11 10 11 0.9091 1.0000 0.9091 R -1
oligos_6nt_mkv2_m4 MA0079.5 oligos_6nt_mkv2_m4 SP1 0.775 0.698 10 9 9 10 0.9000 0.9000 1.0000 R 0
oligos_6nt_mkv2_m4 MA1522.2 oligos_6nt_mkv2_m4 MAZ 0.865 0.692 10 8 8 10 0.8000 0.8000 1.0000 D 0
oligos_6nt_mkv2_m4 MA0516.3 oligos_6nt_mkv2_m4 SP2 0.753 0.678 10 9 9 10 0.9000 0.9000 1.0000 R 0
oligos_6nt_mkv2_m4 MA0740.2 oligos_6nt_mkv2_m4 KLF14 0.743 0.669 10 9 9 10 0.9000 0.9000 1.0000 R 0
oligos_6nt_mkv2_m4 MA0599.1 oligos_6nt_mkv2_m4 KLF5 0.802 0.656 10 10 9 11 0.8182 0.9000 0.9000 D -1
oligos_6nt_mkv2_m4 MA1511.2 oligos_6nt_mkv2_m4 KLF10 0.703 0.633 10 9 9 10 0.9000 0.9000 1.0000 R 0
oligos_6nt_mkv2_m4 MA0528.3 oligos_6nt_mkv2_m4 ZNF263 0.902 0.632 10 7 7 10 0.7000 0.7000 1.0000 R 1
oligos_6nt_mkv2_m4 MA0493.3 oligos_6nt_mkv2_m4 KLF1 0.755 0.604 10 8 8 10 0.8000 0.8000 1.0000 R 0
oligos_6nt_mkv2_m4 MA1513.2 oligos_6nt_mkv2_m4 KLF15 0.754 0.603 10 8 8 10 0.8000 0.8000 1.0000 D 0
oligos_6nt_mkv2_m4 MA1965.2 oligos_6nt_mkv2_m4 SP5 0.999 0.599 10 6 6 10 0.6000 0.6000 1.0000 D 2
oligos_6nt_mkv2_m4 MA1959.2 oligos_6nt_mkv2_m4 KLF7 0.744 0.595 10 8 8 10 0.8000 0.8000 1.0000 R 0
oligos_6nt_mkv2_m4 MA0039.5 oligos_6nt_mkv2_m4 KLF4 0.742 0.594 10 8 8 10 0.8000 0.8000 1.0000 D 0
oligos_6nt_mkv2_m4 MA1627.2 oligos_6nt_mkv2_m4 Wt1 0.864 0.576 10 10 8 12 0.6667 0.8000 0.8000 D 2
oligos_6nt_mkv2_m4 MA1596.1 oligos_6nt_mkv2_m4 ZNF460 0.882 0.551 10 16 10 16 0.6250 1.0000 0.6250 D -5
oligos_6nt_mkv2_m4 MA1587.1 oligos_6nt_mkv2_m4 ZNF135 0.724 0.517 10 14 10 14 0.7143 1.0000 0.7143 D -4
oligos_6nt_mkv2_m4 MA2099.1 oligos_6nt_mkv2_m4 ZNF770 0.759 0.483 10 8 7 11 0.6364 0.7000 0.8750 D -1
oligos_6nt_mkv2_m4 MA1578.2 oligos_6nt_mkv2_m4 VEZF1 0.766 0.459 10 6 6 10 0.6000 0.6000 1.0000 D 2
oligos_6nt_mkv2_m4 MA0471.3 oligos_6nt_mkv2_m4 E2F6 0.721 0.459 10 8 7 11 0.6364 0.7000 0.8750 R -1
oligos_6nt_mkv2_m4 MA1652.2 oligos_6nt_mkv2_m4 ZKSCAN5 0.752 0.439 10 9 7 12 0.5833 0.7000 0.7778 R -2
oligos_6nt_mkv2_m4 MA1723.2 oligos_6nt_mkv2_m4 PRDM9 0.854 0.427 10 20 10 20 0.5000 1.0000 0.5000 R -4
oligos_6nt_mkv2_m4 MA1637.2 oligos_6nt_mkv2_m4 EBF3 0.884 0.408 10 9 6 13 0.4615 0.6000 0.6667 R 4
oligos_6nt_mkv2_m4 MA1604.2 oligos_6nt_mkv2_m4 Ebf2 0.878 0.405 10 9 6 13 0.4615 0.6000 0.6667 R 4
oligos_6nt_mkv2_m4 MA1710.2 oligos_6nt_mkv2_m4 ZNF257 0.936 0.401 10 10 6 14 0.4286 0.6000 0.6000 R -4 
 Host name	rsat
 Job started	2025-05-16.184426
 Job done	2025-05-16.184438
 Seconds	1.96
	user	1.96
	system	0.53
	cuser	8.86
;	csystem	0.78