/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/discovered_motifs/oligos_6nt_mkv2_m5/peak-motifs_oligos_6nt_mkv2_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/discovered_motifs/oligos_6nt_mkv2_m5/peak-motifs_oligos_6nt_mkv2_m5.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/discovered_motifs/oligos_6nt_mkv2_m5/peak-motifs_oligos_6nt_mkv2_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
	file1 	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/discovered_motifs/oligos_6nt_mkv2_m5/peak-motifs_oligos_6nt_mkv2_m5.tf
 Output files
	html_index   	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/discovered_motifs/oligos_6nt_mkv2_m5/peak-motifs_oligos_6nt_mkv2_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/discovered_motifs/oligos_6nt_mkv2_m5/peak-motifs_oligos_6nt_mkv2_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab
	match_table_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/discovered_motifs/oligos_6nt_mkv2_m5/peak-motifs_oligos_6nt_mkv2_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/discovered_motifs/oligos_6nt_mkv2_m5/peak-motifs_oligos_6nt_mkv2_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/discovered_motifs/oligos_6nt_mkv2_m5/peak-motifs_oligos_6nt_mkv2_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html
	prefix       	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/discovered_motifs/oligos_6nt_mkv2_m5/peak-motifs_oligos_6nt_mkv2_m5_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/discovered_motifs/oligos_6nt_mkv2_m5/peak-motifs_oligos_6nt_mkv2_m5.tf
		file1	1	11	119
	file2	879 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
		file2		1		6		20
		file2		2		14		43
		file2		3		10		25
		file2		4		15		10
		file2		5		10		17
		file2		6		10		18
		file2		7		17		25
		file2		8		15		33
		file2		9		14		16
		file2		10		6		16
		file2		11		15		1369
		...	869 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv2_m5 MA0847.4 oligos_6nt_mkv2_m5 FOXD2 0.747 0.747 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m5 MA0851.2 oligos_6nt_mkv2_m5 Foxj3 0.859 0.703 11 9 9 11 0.8182 0.8182 1.0000 D 0
oligos_6nt_mkv2_m5 MA0515.1 oligos_6nt_mkv2_m5 Sox6 0.752 0.684 11 10 10 11 0.9091 0.9091 1.0000 R 1
oligos_6nt_mkv2_m5 MA0867.3 oligos_6nt_mkv2_m5 SOX4 0.875 0.636 11 8 8 11 0.7273 0.7273 1.0000 D 3
oligos_6nt_mkv2_m5 MA0614.1 oligos_6nt_mkv2_m5 Foxj2 0.866 0.630 11 8 8 11 0.7273 0.7273 1.0000 D 0
oligos_6nt_mkv2_m5 MA1489.1 oligos_6nt_mkv2_m5 FOXN3 0.848 0.617 11 8 8 11 0.7273 0.7273 1.0000 D 0
oligos_6nt_mkv2_m5 MA0613.1 oligos_6nt_mkv2_m5 FOXG1 0.841 0.612 11 8 8 11 0.7273 0.7273 1.0000 D 0
oligos_6nt_mkv2_m5 MA0041.3 oligos_6nt_mkv2_m5 FOXD3 0.765 0.601 11 14 11 14 0.7857 1.0000 0.7857 D -3
oligos_6nt_mkv2_m5 MA0040.2 oligos_6nt_mkv2_m5 Foxq1 0.771 0.578 11 10 9 12 0.7500 0.8182 0.9000 R -1
oligos_6nt_mkv2_m5 MA0869.3 oligos_6nt_mkv2_m5 Sox11 0.778 0.566 11 8 8 11 0.7273 0.7273 1.0000 D 2
oligos_6nt_mkv2_m5 MA0030.2 oligos_6nt_mkv2_m5 FOXF2 0.843 0.562 11 9 8 12 0.6667 0.7273 0.8889 D -1
oligos_6nt_mkv2_m5 MA1606.2 oligos_6nt_mkv2_m5 Foxf1 0.876 0.557 11 7 7 11 0.6364 0.6364 1.0000 D 0
oligos_6nt_mkv2_m5 MA1125.2 oligos_6nt_mkv2_m5 ZNF384 0.766 0.557 11 8 8 11 0.7273 0.7273 1.0000 D 2
oligos_6nt_mkv2_m5 MA0084.2 oligos_6nt_mkv2_m5 SRY 0.870 0.554 11 7 7 11 0.6364 0.6364 1.0000 D 2
oligos_6nt_mkv2_m5 MA0033.2 oligos_6nt_mkv2_m5 FOXL1 0.868 0.552 11 7 7 11 0.6364 0.6364 1.0000 D 0
oligos_6nt_mkv2_m5 MA0850.1 oligos_6nt_mkv2_m5 FOXP3 0.865 0.550 11 7 7 11 0.6364 0.6364 1.0000 D 0
oligos_6nt_mkv2_m5 MA1152.2 oligos_6nt_mkv2_m5 SOX15 0.862 0.548 11 7 7 11 0.6364 0.6364 1.0000 R 4
oligos_6nt_mkv2_m5 MA0157.4 oligos_6nt_mkv2_m5 Foxo3 0.858 0.546 11 7 7 11 0.6364 0.6364 1.0000 D 0
oligos_6nt_mkv2_m5 MA0852.3 oligos_6nt_mkv2_m5 FOXK1 0.856 0.545 11 7 7 11 0.6364 0.6364 1.0000 D 0
oligos_6nt_mkv2_m5 MA0480.3 oligos_6nt_mkv2_m5 Foxo1 0.856 0.545 11 7 7 11 0.6364 0.6364 1.0000 D 0
oligos_6nt_mkv2_m5 MA0593.2 oligos_6nt_mkv2_m5 FOXP2 0.816 0.544 11 9 8 12 0.6667 0.7273 0.8889 D -1
oligos_6nt_mkv2_m5 MA0848.1 oligos_6nt_mkv2_m5 FOXO4 0.849 0.541 11 7 7 11 0.6364 0.6364 1.0000 D 0
oligos_6nt_mkv2_m5 MA0849.1 oligos_6nt_mkv2_m5 FOXO6 0.844 0.537 11 7 7 11 0.6364 0.6364 1.0000 D 0
oligos_6nt_mkv2_m5 MA1103.3 oligos_6nt_mkv2_m5 FOXK2 0.842 0.536 11 7 7 11 0.6364 0.6364 1.0000 D 0
oligos_6nt_mkv2_m5 MA1563.2 oligos_6nt_mkv2_m5 SOX18 0.736 0.536 11 8 8 11 0.7273 0.7273 1.0000 D 3
oligos_6nt_mkv2_m5 MA2117.1 oligos_6nt_mkv2_m5 FOXP4 0.840 0.534 11 7 7 11 0.6364 0.6364 1.0000 D 0
oligos_6nt_mkv2_m5 MA0868.3 oligos_6nt_mkv2_m5 SOX8 0.833 0.530 11 7 7 11 0.6364 0.6364 1.0000 D 3
oligos_6nt_mkv2_m5 MA0087.3 oligos_6nt_mkv2_m5 Sox5 0.728 0.530 11 8 8 11 0.7273 0.7273 1.0000 D 3
oligos_6nt_mkv2_m5 MA0031.2 oligos_6nt_mkv2_m5 FOXD1 0.831 0.529 11 7 7 11 0.6364 0.6364 1.0000 D 0
oligos_6nt_mkv2_m5 MA0481.4 oligos_6nt_mkv2_m5 FOXP1 0.827 0.526 11 7 7 11 0.6364 0.6364 1.0000 D 0
oligos_6nt_mkv2_m5 MA0042.2 oligos_6nt_mkv2_m5 FOXI1 0.826 0.526 11 7 7 11 0.6364 0.6364 1.0000 D 0
oligos_6nt_mkv2_m5 MA0077.2 oligos_6nt_mkv2_m5 SOX9 0.723 0.526 11 8 8 11 0.7273 0.7273 1.0000 R 3
oligos_6nt_mkv2_m5 MA1683.2 oligos_6nt_mkv2_m5 FOXA3 0.823 0.524 11 7 7 11 0.6364 0.6364 1.0000 D 0
oligos_6nt_mkv2_m5 MA0148.5 oligos_6nt_mkv2_m5 FOXA1 0.708 0.515 11 8 8 11 0.7273 0.7273 1.0000 D 0
oligos_6nt_mkv2_m5 MA1487.3 oligos_6nt_mkv2_m5 FOXE1 0.931 0.497 11 12 8 15 0.5333 0.7273 0.6667 D -4
oligos_6nt_mkv2_m5 MA2118.1 oligos_6nt_mkv2_m5 FOXS1 0.840 0.490 11 8 7 12 0.5833 0.6364 0.8750 D -1
oligos_6nt_mkv2_m5 MA0442.3 oligos_6nt_mkv2_m5 SOX10 0.891 0.486 11 6 6 11 0.5455 0.5455 1.0000 D 4
oligos_6nt_mkv2_m5 MA0846.2 oligos_6nt_mkv2_m5 FOXC2 0.840 0.480 11 11 8 14 0.5714 0.7273 0.7273 D -3
oligos_6nt_mkv2_m5 MA0047.4 oligos_6nt_mkv2_m5 FOXA2 0.795 0.464 11 8 7 12 0.5833 0.6364 0.8750 D -1
oligos_6nt_mkv2_m5 MA1607.2 oligos_6nt_mkv2_m5 Foxl2 0.848 0.424 11 10 7 14 0.5000 0.6364 0.7000 D -3
oligos_6nt_mkv2_m5 MA0032.2 oligos_6nt_mkv2_m5 FOXC1 0.715 0.409 11 11 8 14 0.5714 0.7273 0.7273 D -3 
 Host name	rsat
 Job started	2025-05-16.184438
 Job done	2025-05-16.184508
 Seconds	4.95
	user	4.96
	system	1.32
	cuser	22.67
;	csystem	1.84