/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/discovered_motifs/oligos_7nt_mkv2_m4/peak-motifs_oligos_7nt_mkv2_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/discovered_motifs/oligos_7nt_mkv2_m4/peak-motifs_oligos_7nt_mkv2_m4.tf -format2 tf -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/discovered_motifs/oligos_7nt_mkv2_m4/peak-motifs_oligos_7nt_mkv2_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
	file1 	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/discovered_motifs/oligos_7nt_mkv2_m4/peak-motifs_oligos_7nt_mkv2_m4.tf
 Output files
	prefix       	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/discovered_motifs/oligos_7nt_mkv2_m4/peak-motifs_oligos_7nt_mkv2_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/discovered_motifs/oligos_7nt_mkv2_m4/peak-motifs_oligos_7nt_mkv2_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.tab
	html_index   	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/discovered_motifs/oligos_7nt_mkv2_m4/peak-motifs_oligos_7nt_mkv2_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_index.html
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/discovered_motifs/oligos_7nt_mkv2_m4/peak-motifs_oligos_7nt_mkv2_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/discovered_motifs/oligos_7nt_mkv2_m4/peak-motifs_oligos_7nt_mkv2_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant_alignments_1ton.tab
	match_table_html	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/discovered_motifs/oligos_7nt_mkv2_m4/peak-motifs_oligos_7nt_mkv2_m4_vs_db_JASPAR2024_CORE_vertebrates_non-redundant.html
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/discovered_motifs/oligos_7nt_mkv2_m4/peak-motifs_oligos_7nt_mkv2_m4.tf
		file1	1	12	114
	file2	879 matrices	$RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_vertebrates_non-redundant_pfms_transfac.txt
		file2		1		6		20
		file2		2		14		43
		file2		3		10		25
		file2		4		15		10
		file2		5		10		17
		file2		6		10		18
		file2		7		17		25
		file2		8		15		33
		file2		9		14		16
		file2		10		6		16
		file2		11		15		1369
		...	869 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv2_m4 MA0847.4 oligos_7nt_mkv2_m4 FOXD2 0.709 0.649 12 11 11 12 0.9167 0.9167 1.0000 D 1
oligos_7nt_mkv2_m4 MA0041.3 oligos_7nt_mkv2_m4 FOXD3 0.735 0.630 12 14 12 14 0.8571 1.0000 0.8571 D -2
oligos_7nt_mkv2_m4 MA0515.1 oligos_7nt_mkv2_m4 Sox6 0.729 0.608 12 10 10 12 0.8333 0.8333 1.0000 R 2
oligos_7nt_mkv2_m4 MA0867.3 oligos_7nt_mkv2_m4 SOX4 0.864 0.576 12 8 8 12 0.6667 0.6667 1.0000 D 4
oligos_7nt_mkv2_m4 MA0851.2 oligos_7nt_mkv2_m4 Foxj3 0.765 0.574 12 9 9 12 0.7500 0.7500 1.0000 D 1
oligos_7nt_mkv2_m4 MA0030.2 oligos_7nt_mkv2_m4 FOXF2 0.734 0.551 12 9 9 12 0.7500 0.7500 1.0000 D 0
oligos_7nt_mkv2_m4 MA0593.2 oligos_7nt_mkv2_m4 FOXP2 0.728 0.546 12 9 9 12 0.7500 0.7500 1.0000 D 0
oligos_7nt_mkv2_m4 MA1125.2 oligos_7nt_mkv2_m4 ZNF384 0.782 0.521 12 8 8 12 0.6667 0.6667 1.0000 D 2
oligos_7nt_mkv2_m4 MA0614.1 oligos_7nt_mkv2_m4 Foxj2 0.771 0.514 12 8 8 12 0.6667 0.6667 1.0000 D 1
oligos_7nt_mkv2_m4 MA0869.3 oligos_7nt_mkv2_m4 Sox11 0.756 0.504 12 8 8 12 0.6667 0.6667 1.0000 D 3
oligos_7nt_mkv2_m4 MA1489.1 oligos_7nt_mkv2_m4 FOXN3 0.751 0.500 12 8 8 12 0.6667 0.6667 1.0000 D 1
oligos_7nt_mkv2_m4 MA1487.3 oligos_7nt_mkv2_m4 FOXE1 0.832 0.499 12 12 9 15 0.6000 0.7500 0.7500 D -3
oligos_7nt_mkv2_m4 MA0613.1 oligos_7nt_mkv2_m4 FOXG1 0.745 0.497 12 8 8 12 0.6667 0.6667 1.0000 D 1
oligos_7nt_mkv2_m4 MA1152.2 oligos_7nt_mkv2_m4 SOX15 0.848 0.494 12 7 7 12 0.5833 0.5833 1.0000 R 5
oligos_7nt_mkv2_m4 MA0084.2 oligos_7nt_mkv2_m4 SRY 0.837 0.488 12 7 7 12 0.5833 0.5833 1.0000 D 3
oligos_7nt_mkv2_m4 MA0846.2 oligos_7nt_mkv2_m4 FOXC2 0.748 0.481 12 11 9 14 0.6429 0.7500 0.8182 D -2
oligos_7nt_mkv2_m4 MA2118.1 oligos_7nt_mkv2_m4 FOXS1 0.704 0.469 12 8 8 12 0.6667 0.6667 1.0000 D 0
oligos_7nt_mkv2_m4 MA0868.3 oligos_7nt_mkv2_m4 SOX8 0.802 0.468 12 7 7 12 0.5833 0.5833 1.0000 D 4
oligos_7nt_mkv2_m4 MA1563.2 oligos_7nt_mkv2_m4 SOX18 0.701 0.468 12 8 8 12 0.6667 0.6667 1.0000 D 4
oligos_7nt_mkv2_m4 MA0850.1 oligos_7nt_mkv2_m4 FOXP3 0.760 0.444 12 7 7 12 0.5833 0.5833 1.0000 D 1
oligos_7nt_mkv2_m4 MA1606.2 oligos_7nt_mkv2_m4 Foxf1 0.759 0.443 12 7 7 12 0.5833 0.5833 1.0000 D 1
oligos_7nt_mkv2_m4 MA0442.3 oligos_7nt_mkv2_m4 SOX10 0.879 0.440 12 6 6 12 0.5000 0.5000 1.0000 D 5
oligos_7nt_mkv2_m4 MA0033.2 oligos_7nt_mkv2_m4 FOXL1 0.753 0.439 12 7 7 12 0.5833 0.5833 1.0000 D 1
oligos_7nt_mkv2_m4 MA0157.4 oligos_7nt_mkv2_m4 Foxo3 0.752 0.439 12 7 7 12 0.5833 0.5833 1.0000 D 1
oligos_7nt_mkv2_m4 MA0852.3 oligos_7nt_mkv2_m4 FOXK1 0.751 0.438 12 7 7 12 0.5833 0.5833 1.0000 D 1
oligos_7nt_mkv2_m4 MA0480.3 oligos_7nt_mkv2_m4 Foxo1 0.749 0.437 12 7 7 12 0.5833 0.5833 1.0000 D 1
oligos_7nt_mkv2_m4 MA0848.1 oligos_7nt_mkv2_m4 FOXO4 0.742 0.433 12 7 7 12 0.5833 0.5833 1.0000 D 1
oligos_7nt_mkv2_m4 MA1103.3 oligos_7nt_mkv2_m4 FOXK2 0.730 0.426 12 7 7 12 0.5833 0.5833 1.0000 D 1
oligos_7nt_mkv2_m4 MA0849.1 oligos_7nt_mkv2_m4 FOXO6 0.730 0.426 12 7 7 12 0.5833 0.5833 1.0000 D 1
oligos_7nt_mkv2_m4 MA2117.1 oligos_7nt_mkv2_m4 FOXP4 0.726 0.423 12 7 7 12 0.5833 0.5833 1.0000 D 1
oligos_7nt_mkv2_m4 MA0031.2 oligos_7nt_mkv2_m4 FOXD1 0.716 0.418 12 7 7 12 0.5833 0.5833 1.0000 D 1
oligos_7nt_mkv2_m4 MA0042.2 oligos_7nt_mkv2_m4 FOXI1 0.715 0.417 12 7 7 12 0.5833 0.5833 1.0000 D 1
oligos_7nt_mkv2_m4 MA0481.4 oligos_7nt_mkv2_m4 FOXP1 0.715 0.417 12 7 7 12 0.5833 0.5833 1.0000 D 1
oligos_7nt_mkv2_m4 MA1683.2 oligos_7nt_mkv2_m4 FOXA3 0.711 0.415 12 7 7 12 0.5833 0.5833 1.0000 D 1
oligos_7nt_mkv2_m4 MA1607.2 oligos_7nt_mkv2_m4 Foxl2 0.706 0.403 12 10 8 14 0.5714 0.6667 0.8000 D -2 
 Host name	rsat
 Job started	2025-05-16.184520
 Job done	2025-05-16.184536
 Seconds	2.41
	user	2.41
	system	0.74
	cuser	11.29
;	csystem	1.09