compare-matrices -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab Program version 1.118 Quick mode Input files file2 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/discovered_motifs/peak-motifs_motifs_discovered.tf file1 $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/discovered_motifs/peak-motifs_motifs_discovered.tf Output files prefix $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/discovered_motifs/peak-motifs_motifs_disco_compa html_index $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/discovered_motifs/peak-motifs_motifs_disco_compa_index.html alignments_1ton_html $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.html match_table_html $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/discovered_motifs/peak-motifs_motifs_disco_compa.html alignments_1ton $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/discovered_motifs/peak-motifs_motifs_disco_compa_alignments_1ton.tab match_table_txt $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab Matrices file1 10 matrices $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/discovered_motifs/peak-motifs_motifs_discovered.tf file1 1 13 101 file1 2 10 125 file1 3 11 137 file1 4 10 127 file1 5 11 119 file1 6 14 86 file1 7 12 190 file1 8 14 78 file1 9 12 114 file1 10 12 80 file2 10 matrices $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.184343_2025-05-16.184343_1fYTf9/results/discovered_motifs/peak-motifs_motifs_discovered.tf file2 1 13 101 file2 2 10 125 file2 3 11 137 file2 4 10 127 file2 5 11 119 file2 6 14 86 file2 7 12 190 file2 8 14 78 file2 9 12 114 file2 10 12 80 Column content 1 id1 Identifier of the first matrix 2 id2 Identifier of the second matrix 3 name1 Name of the first matrix 4 name2 Name of the second matrix 5 cor Pearson coefficient of correlation between frequency matrices 6 Ncor Normalized correlation. Ncor = cor * Wr 7 w1 Width of the first matrix 8 w2 Width of the second matrix 9 w Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset) 10 W Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w 11 Wr Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W 12 wr1 Alignment length relative to the width of the first matrix. wr1 = w/w1 13 wr2 Alignment length relative to the width of the second matrix. wr2 = w/w2 14 strand "strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct; R=reverse) 15 offset shift of the second matrix relative to the first matrix (negative:left; positive: right)
| id1 | id2 | name1 | name2 | cor | Ncor | w1 | w2 | w | W | Wr | wr1 | wr2 | strand | offset |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| oligos_7nt_mkv2_m3 | oligos_7nt_mkv2_m3 | oligos_7nt_mkv2_m3 | oligos_7nt_mkv2_m3 | 1.000 | 1.000 | 14 | 14 | 14 | 14 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv2_m2 | oligos_7nt_mkv2_m2 | oligos_7nt_mkv2_m2 | oligos_7nt_mkv2_m2 | 1.000 | 1.000 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv2_m5 | oligos_7nt_mkv2_m5 | oligos_7nt_mkv2_m5 | oligos_7nt_mkv2_m5 | 1.000 | 1.000 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv2_m4 | oligos_6nt_mkv2_m4 | oligos_6nt_mkv2_m4 | oligos_6nt_mkv2_m4 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv2_m5 | oligos_6nt_mkv2_m5 | oligos_6nt_mkv2_m5 | oligos_6nt_mkv2_m5 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv2_m3 | oligos_6nt_mkv2_m3 | oligos_6nt_mkv2_m3 | oligos_6nt_mkv2_m3 | 1.000 | 1.000 | 11 | 11 | 11 | 11 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv2_m1 | oligos_6nt_mkv2_m1 | oligos_6nt_mkv2_m1 | oligos_6nt_mkv2_m1 | 1.000 | 1.000 | 13 | 13 | 13 | 13 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv2_m2 | oligos_6nt_mkv2_m2 | oligos_6nt_mkv2_m2 | oligos_6nt_mkv2_m2 | 1.000 | 1.000 | 10 | 10 | 10 | 10 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv2_m4 | oligos_7nt_mkv2_m4 | oligos_7nt_mkv2_m4 | oligos_7nt_mkv2_m4 | 1.000 | 1.000 | 12 | 12 | 12 | 12 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_7nt_mkv2_m1 | oligos_7nt_mkv2_m1 | oligos_7nt_mkv2_m1 | oligos_7nt_mkv2_m1 | 1.000 | 1.000 | 14 | 14 | 14 | 14 | 1.0000 | 1.0000 | 1.0000 | D | 0 |
| oligos_6nt_mkv2_m1 | oligos_7nt_mkv2_m1 | oligos_6nt_mkv2_m1 | oligos_7nt_mkv2_m1 | 0.987 | 0.916 | 13 | 14 | 13 | 14 | 0.9286 | 1.0000 | 0.9286 | D | 0 |
| oligos_7nt_mkv2_m1 | oligos_6nt_mkv2_m1 | oligos_7nt_mkv2_m1 | oligos_6nt_mkv2_m1 | 0.987 | 0.916 | 14 | 13 | 13 | 14 | 0.9286 | 0.9286 | 1.0000 | D | 0 |
| oligos_7nt_mkv2_m4 | oligos_6nt_mkv2_m5 | oligos_7nt_mkv2_m4 | oligos_6nt_mkv2_m5 | 0.961 | 0.881 | 12 | 11 | 11 | 12 | 0.9167 | 0.9167 | 1.0000 | D | 1 |
| oligos_6nt_mkv2_m5 | oligos_7nt_mkv2_m4 | oligos_6nt_mkv2_m5 | oligos_7nt_mkv2_m4 | 0.961 | 0.881 | 11 | 12 | 11 | 12 | 0.9167 | 1.0000 | 0.9167 | D | -1 |
Host name rsat Job started 2025-05-16.184405 Job done 2025-05-16.184409 Seconds 0.23 user 0.23 system 0.07 cuser 2.96 ; csystem 0.51