; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.201626_2025-05-16.201626_tsaqOg/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices.tf -from transfac -to tab -return counts -return sites -o $RSAT/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.201626_2025-05-16.201626_tsaqOg/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.201626_2025-05-16.201626_tsaqOg/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices.tf
; Input format        	transfac
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/05/16/peak-motifs.2025-05-16.201626_2025-05-16.201626_tsaqOg/results/oligos_6nt_mkv1/peak-motifs_oligos-2str-noov_6nt_mkv1_pssm_count_matrices.txt
; Output format       	tab
; pseudo-weight       	1
a	8	2	2	3	0	17	0	5	2	1	15	0	7
c	5	4	1	3	13	1	4	0	1	5	0	7	5
g	2	2	13	0	4	0	0	13	0	11	2	3	6
t	3	10	2	12	1	0	14	0	15	1	1	8	0
//
; Sites	18
>site_0
ATGCCATGTGATG
>site_1
ATGCCATGTGACA
>site_2
TTGTCACATGACC
>site_3
CTGTGATGAGTGG
>site_4
ATTACATATCACC
>site_5
TGGTCATGTGATA
>site_6
ATGCCATGTGACA
>site_7
CTGTCACATGACC
>site_8
GAGTGATGTCATG
>site_9
GAGTGATGTCATG
>site_10
ATTACATGACAGC
>site_11
CTGTCATGTAATG
>site_12
ACCACCCATTACA
>site_13
CCATTACATGATA
>site_14
ATGTCATGCGGGG
>site_15
TGGTCATGTGATA
>site_16
CCATCATGTGATA
>site_17
ACGTGATGTCGCC
a	0	0	5	0	0	0	0	6	0	0	3	0	0	0	4	0	1
c	1	6	1	1	0	0	0	0	0	0	0	0	0	0	1	0	1
g	0	0	0	0	6	0	6	0	0	6	3	6	0	5	1	0	4
t	5	0	0	5	0	6	0	0	6	0	0	0	6	1	0	6	0
//
; Sites	6
>site_0
CCATGTGATGGGTTATG
>site_1
TCCTGTGATGAGTGGTC
>site_2
TCATGTGATGAGTGATG
>site_3
TCATGTGATGAGTGATG
>site_4
TCATGTGATGGGTGCTG
>site_5
TCACGTGATGGGTGATA
a	18	6	2	14	0	18	8	2	13	1
c	8	3	12	9	27	10	3	22	10	25
g	1	6	13	6	1	0	2	2	1	1
t	2	14	2	0	1	1	16	3	5	2
//
; Sites	29
>site_0
CATGCATCAC
>site_1
ATGGCATCAC
>site_2
AACCCATCAC
>site_3
ATGGCATCAC
>site_4
ACCACCTGTC
>site_5
TGACCACCTG
>site_6
ATGACCACCT
>site_7
ATGACCACTC
>site_8
CGCCCATCCC
>site_9
ATGACATCGC
>site_10
ATGACCACCC
>site_11
ATTACATATC
>site_12
CACCCATTAC
>site_13
ATGACCACCC
>site_14
ATGGCATCAC
>site_15
AGCACCCATC
>site_16
ACAGCACCCA
>site_17
GACAGCACCC
>site_18
ATGACAGCAC
>site_19
CACCCATTAC
>site_20
ATGACCACCC
>site_21
TGCCCATCAC
>site_22
ATGATTGCCC
>site_23
ATGACCACCC
>site_24
CACCCATTAC
>site_25
CCCGCATGAC
>site_26
ATGACCACCC
>site_27
CGCCCATCAT
>site_28
CGCCCATCAC
a	3	0	0	4	0	2	2	1	1	0	1	1
c	0	1	1	0	4	2	1	2	1	1	1	2
g	1	0	3	0	0	0	1	1	1	0	2	0
t	0	3	0	0	0	0	0	0	1	3	0	1
//
; Sites	4
>site_0
ATGACCACCTGT
>site_1
GTGACAAGGTGA
>site_2
ATGACAGCACCC
>site_3
ACCACCCATTAC
; Host name	rsat
; Job started	2025-05-16.201637
; Job done	2025-05-16.201637
; Seconds	0.1
;	user	0.11
;	system	0.01
;	cuser	0
;	csystem	0
