peak-motifs Pericytes_control_MDD

Motif discovery

Motif 1 oligos_6nt_mkv4_m1

k-mer sig=350.00; evalue=0

tytCTTTTCTTyy

RRAAGAAAAGARA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor tytCTTTTCTTyy

ZNF677 MA2101.1 R 11 0.7857 0.746 0.586 NA NA

Mecom MA0029.2 R 10 0.7143 0.782 0.558 NA NA

Gata3 MA0037.5 D 8 0.6154 0.805 0.496 NA NA

Total matches= 10 (7 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 14652 (9.44%)
Max nb of predicted sites per peak: 12
(chr7:20440771-20441042)
Mean nb of predicted sites per peak: 1.12

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_mkv4_m2

k-mer sig=294.69; evalue=2e-295

awACAAAACAaa

TTTGTTTTGTWT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor awACAAAACAaa

ZNF384 MA1125.2 D 8 0.6667 0.772 0.515 NA NA

SRY MA0084.2 D 7 0.5833 0.826 0.482 NA NA

Sox11 MA0869.3 D 8 0.6667 0.720 0.480 NA NA

Total matches= 14 (11 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 13811 (8.89%)
Max nb of predicted sites per peak: 9
(chr13:50333798-50334762)
Mean nb of predicted sites per peak: 1.17

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_mkv4_m3

k-mer sig=278.24; evalue=5.8e-279

wwTATTTTAww

WWTAAAATAWW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wwTATTTTAww

MEF2C MA0497.2 R 11 1.0000 0.721 0.721 NA NA

MEF2A MA0052.5 R 10 0.9091 0.717 0.652 NA NA

TBP MA0108.3 R 7 0.6364 0.838 0.533 NA NA

Total matches= 22 (19 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 32259 (20.78%)
Max nb of predicted sites per peak: 15
(chr6:118715745-118716379)
Mean nb of predicted sites per peak: 1.26

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_mkv4_m4

k-mer sig=262.17; evalue=6.8e-263

ssCTGGGCss

SSGCCCAGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssCTGGGCss

ZNF416 MA1979.2 D 9 0.8182 0.918 0.751 NA NA

ZNF449 MA1656.2 R 10 1.0000 0.707 0.707 NA NA

ZNF692 MA1986.2 R 8 0.8000 0.819 0.656 NA NA

Total matches= 17 (14 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 30047 (19.35%)
Max nb of predicted sites per peak: 33
(chr18:75211099-75212307)
Mean nb of predicted sites per peak: 1.47

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_mkv4_m5

k-mer sig=257.06; evalue=8.7e-258

ysCTTCTCys

SRGAGAAGSR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ysCTTCTCys

ZNF768 MA1731.2 D 9 0.9000 0.715 0.644 NA NA

GATA4 MA0482.3 D 8 0.8000 0.726 0.581 NA NA

Gata3 MA0037.5 D 8 0.8000 0.713 0.570 NA NA

Total matches= 11 (8 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 9342 (6.02%)
Max nb of predicted sites per peak: 6
(chr9:976094-977557)
Mean nb of predicted sites per peak: 1.07

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 oligos_7nt_mkv5_m1

k-mer sig=350.00; evalue=0

aaaaCAAAAACaa

TTGTTTTTGTTTT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor aaaaCAAAAACaa

ZIM3 MA1709.2 D 11 0.8462 0.726 0.614 NA NA

Stat2 MA1623.2 D 10 0.7692 0.755 0.581 NA NA

FOXD2 MA0847.4 D 10 0.7143 0.710 0.507 NA NA

Total matches= 13 (10 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 18010 (11.60%)
Max nb of predicted sites per peak: 11
(chr8:30971394-30972561)
Mean nb of predicted sites per peak: 1.22

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 oligos_7nt_mkv5_m2

k-mer sig=350.00; evalue=0

ttTATTTTTAaww

WWTTAAAAATAAA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ttTATTTTTAaww

MEF2D MA0773.1 R 12 0.9231 0.786 0.725 NA NA

MEF2C MA0497.2 R 11 0.8462 0.851 0.720 NA NA

MEF2B MA0660.1 R 12 0.9231 0.758 0.700 NA NA

Total matches= 20 (17 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 29423 (18.95%)
Max nb of predicted sites per peak: 6
(chr7:14967107-14967575)
Mean nb of predicted sites per peak: 1.20

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_7nt_mkv5_m3

k-mer sig=202.28; evalue=5.2e-203

scCACCCACmc

GKGTGGGTGGS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor scCACCCACmc

EGR1 MA0162.5 D 10 0.9091 0.777 0.706 NA NA

GLI3 MA1491.3 D 11 0.7333 0.829 0.608 NA NA

EGR4 MA0733.2 D 10 0.8333 0.718 0.598 NA NA

Total matches= 22 (19 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 23113 (14.89%)
Max nb of predicted sites per peak: 58
(chr3:196694700-196695650)
Mean nb of predicted sites per peak: 1.20

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 oligos_7nt_mkv5_m4

k-mer sig=187.04; evalue=9.1e-188

scCCCCaCCCCCcs

SGGGGGGTGGGGGS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor scCCCCaCCCCCcs

PATZ1 MA1961.2 R 11 0.7857 0.895 0.703 NA NA

ZNF281 MA1630.3 R 10 0.7143 0.901 0.643 NA NA

KLF5 MA0599.1 D 10 0.7143 0.891 0.637 NA NA

Total matches= 26 (23 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 33496 (21.57%)
Max nb of predicted sites per peak: 117
(chr16:80803018-80805221)
Mean nb of predicted sites per peak: 2.18

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_7nt_mkv5_m5

k-mer sig=169.67; evalue=2.1e-170

ttTCTTTTTChy

RDGAAAAAGAAA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ttTCTTTTTChy

Stat2 MA1623.2 R 10 0.8333 0.778 0.649 NA NA

STAT1::STAT2 MA0517.2 D 11 0.7857 0.738 0.580 NA NA

ZNF384 MA1125.2 R 8 0.6667 0.775 0.516 NA NA

Total matches= 7 (4 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 13368 (8.61%)
Max nb of predicted sites per peak: 6
(chr9:125566358-125567282)
Mean nb of predicted sites per peak: 1.08

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]
Discovered motifs versus transcription factor databases
Motifs versus JASPAR2024_CORE_vertebrates_non-redundant database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: Pericytes_control_MDD_down (17/05/2025 01:07)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results