RSAT - position-analysis result

Analysis: result (18/05/2025 19:59)

Command: position-analysis -i $RSAT/public_html/tmp/www-data/2025/05/18/tmp_sequence_2025-05-18.195907_1RyIsi.fasta.purged -v 1 -sort -nofilter -lth_occ 1 -lth_sig 5 -clust_nb 2 -max_asmb_per_cluster 2 -return chi,sig,rank,distrib,clusters,matrices,graphs,index -2str -noov -l 6 -ci 10 -origin center -o $RSAT/public_html/tmp/www-data/2025/05/18/position-analysis_2025-05-18.195907_yp2Ycu/position-analysis.tab

Input files

Type	File
sequences	../tmp_sequence_2025-05-18.195907_1RyIsi.fasta.purged

Output files

Type	File
output	position-analysis.tab
clusters_k2	position-analysis_clusters_complete_k2.tab
cluster_heatmap_k2	position-analysis_clusters_complete_k2/position-analysis_profile_heatmap.pdf
cluster_occ_profiles_k2	position-analysis_clusters_complete_k2/position-analysis_occ_profiles_per_cluster.pdf
cluster_freq_profiles_k2	position-analysis_clusters_complete_k2/position-analysis_freq_profiles_per_cluster.pdf
cluster_median_profiles_k2	position-analysis_clusters_complete_k2/position-analysis_median_profiles_per_cluster.pdf
cluster_median_profiles_table_k2	position-analysis_clusters_complete_k2/position-analysis_median_profiles_per_cluster.tab
assembly	position-analysis_pssm.asmb
sig_matrices	position-analysis_pssm_sig_matrices.tf
count_matrices	position-analysis_pssm_count_matrices.tf
graph_index	position-analysis_graph_index.html

Directories

Type	Directory
output	.
graphs	position-analysis_graphs
clusters_k2	position-analysis_clusters_complete_k2