One-to-n alignments

Command: compare-matrices  -v 1 -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/19/compare-matrices_2025-05-19.135057_3kWOb5/compare-matrices_query_matrices.transfac -file2 $RSAT/public_html/motif_databases/JASPAR/Jaspar_2024/JASPAR2024_CORE_insects_non-redundant_pfms_transfac.txt -format2 tf -strand DR -lth cor 0.7 -lth Ncor 0.4 -uth match_rank 50 -return cor,Ncor,logoDP,NsEucl,NSW,match_rank,matrix_id,matrix_name,width,strand,offset,consensus,alignments_1ton -o $RSAT/public_html/tmp/www-data/2025/05/19/compare-matrices_2025-05-19.135057_3kWOb5/compare-matrices.tab

One-to-n matrix alignment; reference matrix: positions_7nt_m3_shift1 ; 4 matrices ; sort_field=rank_mean

Matrix name Aligned logos cor Ncor logoDP NsEucl NSW rcor rNcor rlogoDP rNsEucl rNSW rank_mean match_rank Aligned matrices
positions_7nt_m3_shift1 (positions_7nt_m3)
; positions_7nt_m3; m=0 (reference); ncol1=11; shift=1; ncol=12; -AAAAAAAAAAA ; Alignment reference a 0 457 495 663 661 662 662 663 662 663 498 460 c 0 51 51 0 0 0 0 0 0 0 55 63 g 0 79 69 0 0 0 0 0 0 0 55 73 t 0 76 48 0 2 1 1 0 1 0 55 67

MA2108.1_shift3 (sqz) 1.000 0.545 11.441 0.999 1.000 1 6 1 1 1 2.000 1
; positions_7nt_m3 versus MA2108.1 (sqz); m=1/3; ncol2=6; w=0; offset=2; strand=D; shift=3; score= 2; ---AAAAAA--- ; cor=1.000; Ncor=0.545; logoDP=11.441; NsEucl=0.999; NSW=1.000; rcor=1; rNcor=6; rlogoDP=1; rNsEucl=1; rNSW=1; rank_mean=2.000; match_rank=1 a 0 0 0 22984.0 22984.0 22984.0 22984.0 22984.0 22984.0 0 0 0 c 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0 0 0 g 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0 0 0 t 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0 0 0

MA0049.1_shift1 (hb) 0.803 0.730 7.942 0.895 0.890 57 2 4 28 58 29.800 28
; positions_7nt_m3 versus MA0049.1 (hb); m=2/3; ncol2=10; w=0; offset=0; strand=D; shift=1; score= 29.8; -smrwAAAAAa- ; cor=0.803; Ncor=0.730; logoDP=7.942; NsEucl=0.895; NSW=0.890; rcor=57; rNcor=2; rlogoDP=4; rNsEucl=28; rNSW=58; rank_mean=29.800; match_rank=28 a 0 1.0 6.0 9.0 4.0 13.0 16.0 16.0 14.0 15.0 9.0 0 c 0 5.0 8.0 3.0 3.0 1.0 0.0 0.0 0.0 1.0 2.0 0 g 0 8.0 2.0 4.0 1.0 0.0 0.0 0.0 2.0 0.0 2.0 0 t 0 2.0 0.0 0.0 8.0 2.0 0.0 0.0 0.0 0.0 3.0 0

MA2306.1_shift0 (D1) 0.728 0.424 6.910 0.845 0.832 64 47 7 71 71 52.000
; positions_7nt_m3 versus MA2306.1 (D1); m=3/3; ncol2=8; w=-1; offset=-1; strand=D; shift=0; score= 52; TwAAATAA---- ; cor=0.728; Ncor=0.424; logoDP=6.910; NsEucl=0.845; NSW=0.832; rcor=64; rNcor=47; rlogoDP=7; rNsEucl=71; rNSW=71; rank_mean=52.000; match_rank= a 1.0 602.0 1152.0 1148.0 1157.0 0.0 1157.0 863.0 0 0 0 0 c 1.0 2.0 0.0 0.0 0.0 0.0 0.0 58.0 0 0 0 0 g 0.0 0.0 0.0 1.0 0.0 0.0 0.0 54.0 0 0 0 0 t 1155.0 553.0 5.0 8.0 0.0 1157.0 0.0 182.0 0 0 0 0

Matrix name	cor	Ncor	logoDP	NsEucl	NSW	rcor	rNcor	rlogoDP	rNsEucl	rNSW	rank_mean	match_rank	Aligned matrices
positions_7nt_m3_shift1 (positions_7nt_m3)													; positions_7nt_m3; m=0 (reference); ncol1=11; shift=1; ncol=12; -AAAAAAAAAAA ; Alignment reference a 0 457 495 663 661 662 662 663 662 663 498 460 c 0 51 51 0 0 0 0 0 0 0 55 63 g 0 79 69 0 0 0 0 0 0 0 55 73 t 0 76 48 0 2 1 1 0 1 0 55 67
MA2108.1_shift3 (sqz)	1.000	0.545	11.441	0.999	1.000	1	6	1	1	1	2.000	1	; positions_7nt_m3 versus MA2108.1 (sqz); m=1/3; ncol2=6; w=0; offset=2; strand=D; shift=3; score= 2; ---AAAAAA--- ; cor=1.000; Ncor=0.545; logoDP=11.441; NsEucl=0.999; NSW=1.000; rcor=1; rNcor=6; rlogoDP=1; rNsEucl=1; rNSW=1; rank_mean=2.000; match_rank=1 a 0 0 0 22984.0 22984.0 22984.0 22984.0 22984.0 22984.0 0 0 0 c 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0 0 0 g 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0 0 0 t 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 0 0 0
MA0049.1_shift1 (hb)	0.803	0.730	7.942	0.895	0.890	57	2	4	28	58	29.800	28	; positions_7nt_m3 versus MA0049.1 (hb); m=2/3; ncol2=10; w=0; offset=0; strand=D; shift=1; score= 29.8; -smrwAAAAAa- ; cor=0.803; Ncor=0.730; logoDP=7.942; NsEucl=0.895; NSW=0.890; rcor=57; rNcor=2; rlogoDP=4; rNsEucl=28; rNSW=58; rank_mean=29.800; match_rank=28 a 0 1.0 6.0 9.0 4.0 13.0 16.0 16.0 14.0 15.0 9.0 0 c 0 5.0 8.0 3.0 3.0 1.0 0.0 0.0 0.0 1.0 2.0 0 g 0 8.0 2.0 4.0 1.0 0.0 0.0 0.0 2.0 0.0 2.0 0 t 0 2.0 0.0 0.0 8.0 2.0 0.0 0.0 0.0 0.0 3.0 0
MA2306.1_shift0 (D1)	0.728	0.424	6.910	0.845	0.832	64	47	7	71	71	52.000		; positions_7nt_m3 versus MA2306.1 (D1); m=3/3; ncol2=8; w=-1; offset=-1; strand=D; shift=0; score= 52; TwAAATAA---- ; cor=0.728; Ncor=0.424; logoDP=6.910; NsEucl=0.845; NSW=0.832; rcor=64; rNcor=47; rlogoDP=7; rNsEucl=71; rNSW=71; rank_mean=52.000; match_rank= a 1.0 602.0 1152.0 1148.0 1157.0 0.0 1157.0 863.0 0 0 0 0 c 1.0 2.0 0.0 0.0 0.0 0.0 0.0 58.0 0 0 0 0 g 0.0 0.0 0.0 1.0 0.0 0.0 0.0 54.0 0 0 0 0 t 1155.0 553.0 5.0 8.0 0.0 1157.0 0.0 182.0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m2_shift0 ; 11 matrices ; sort_field=rank_mean

Matrix name Aligned logos cor Ncor logoDP NsEucl NSW rcor rNcor rlogoDP rNsEucl rNSW rank_mean match_rank Aligned matrices
oligos_7nt_mkv5_m2_shift0 (oligos_7nt_mkv5_m2)
; oligos_7nt_mkv5_m2; m=0 (reference); ncol1=12; shift=0; ncol=12; wtATGCAAATgw ; Alignment reference a 251 131 562 0 6 2 417 423 563 3 134 181 c 38 102 1 3 0 468 3 10 1 13 74 115 g 69 72 2 0 554 2 7 101 1 5 241 109 t 207 260 0 562 5 93 138 31 0 544 116 160

MA0197.3_shift1 (nub) 0.939 0.861 8.605 0.949 0.971 3 1 3 2 3 2.400 2
; oligos_7nt_mkv5_m2 versus MA0197.3 (nub); m=1/10; ncol2=11; w=0; offset=1; strand=D; shift=1; score= 2.4; -TATGyAAATka ; cor=0.939; Ncor=0.861; logoDP=8.605; NsEucl=0.949; NSW=0.971; rcor=3; rNcor=1; rlogoDP=3; rNsEucl=2; rNSW=3; rank_mean=2.400; match_rank=2 a 0 2.0 29.0 0.0 0.0 0.0 24.0 28.0 28.0 4.0 6.0 19.0 c 0 1.0 0.0 0.0 0.0 19.0 0.0 0.0 0.0 1.0 5.0 5.0 g 0 1.0 0.0 0.0 25.0 1.0 0.0 1.0 0.0 0.0 8.0 1.0 t 0 25.0 0.0 29.0 4.0 9.0 5.0 0.0 1.0 24.0 10.0 4.0

MA1702.2_shift0 (Pdp1) 0.873 0.582 5.043 0.908 0.932 26 4 43 17 27 23.400 17
; oligos_7nt_mkv5_m2 versus MA1702.2 (Pdp1); m=2/10; ncol2=8; w=0; offset=0; strand=D; shift=0; score= 23.4; TTATGYAA---- ; cor=0.873; Ncor=0.582; logoDP=5.043; NsEucl=0.908; NSW=0.932; rcor=26; rNcor=4; rlogoDP=43; rNsEucl=17; rNSW=27; rank_mean=23.400; match_rank=17 a 126.0 110.0 4468.0 109.0 331.0 154.0 4598.0 4606.0 0 0 0 0 c 46.0 49.0 35.0 340.0 76.0 3282.0 88.0 60.0 0 0 0 0 g 64.0 119.0 218.0 74.0 4221.0 79.0 71.0 68.0 0 0 0 0 t 4580.0 4538.0 95.0 4293.0 188.0 1301.0 59.0 82.0 0 0 0 0

MA2267.1_shift3 (rib) 0.716 0.537 6.242 0.879 0.868 68 9 9 51 63 40.000 40
; oligos_7nt_mkv5_m2 versus MA2267.1 (rib); m=3/10; ncol2=9; w=0; offset=3; strand=D; shift=3; score= 40; ---yGCrAAAww ; cor=0.716; Ncor=0.537; logoDP=6.242; NsEucl=0.879; NSW=0.868; rcor=68; rNcor=9; rlogoDP=9; rNsEucl=51; rNSW=63; rank_mean=40.000; match_rank=40 a 0 0 0 0.0 0.0 0.0 647.05882352941 1000.0 1000.0 764.70588235294 529.41176470588 500.0 c 0 0 0 529.41176470588 0.0 1000.0 0.0 0.0 0.0 0.0 117.64705882353 0.0 g 0 0 0 0.0 1000.0 0.0 352.94117647059 0.0 0.0 0.0 0.0 125.0 t 0 0 0 470.58823529412 0.0 0.0 0.0 0.0 0.0 235.29411764706 352.94117647059 375.0

MA0254.1_shift1 (vvl) 0.827 0.414 3.980 0.881 0.915 50 62 61 46 43 52.400
; oligos_7nt_mkv5_m2 versus MA0254.1 (vvl); m=4/10; ncol2=6; w=0; offset=1; strand=D; shift=1; score= 52.4; -TAtkMA----- ; cor=0.827; Ncor=0.414; logoDP=3.980; NsEucl=0.881; NSW=0.915; rcor=50; rNcor=62; rlogoDP=61; rNsEucl=46; rNSW=43; rank_mean=52.400; match_rank= a 0 0.0 11.0 2.0 0.0 3.0 11.0 0 0 0 0 0 c 0 2.0 0.0 2.0 0.0 8.0 0.0 0 0 0 0 0 g 0 0.0 0.0 0.0 6.0 0.0 0.0 0 0 0 0 0 t 0 9.0 0.0 7.0 5.0 0.0 0.0 0 0 0 0 0

MA0173.1_rc_shift2 (CG11617_rc) 0.783 0.457 2.722 0.861 0.865 60 20 65 64 64 54.600
; oligos_7nt_mkv5_m2 versus MA0173.1_rc (CG11617_rc); m=5/10; ncol2=7; w=0; offset=2; strand=R; shift=2; score= 54.6; --ATGTtAA--- ; cor=0.783; Ncor=0.457; logoDP=2.722; NsEucl=0.861; NSW=0.865; rcor=60; rNcor=20; rlogoDP=65; rNsEucl=64; rNSW=64; rank_mean=54.600; match_rank= a 0 0 17.0 0.0 0.0 0.0 4.0 17.0 16.0 0 0 0 c 0 0 0.0 0.0 0.0 0.0 3.0 0.0 0.0 0 0 0 g 0 0 0.0 0.0 17.0 0.0 0.0 0.0 0.0 0 0 0 t 0 0 0.0 17.0 0.0 17.0 10.0 0.0 1.0 0 0 0

MA0219.1_shift5 (ems) 0.741 0.432 3.977 0.875 0.891 62 38 62 54 57 54.600
; oligos_7nt_mkv5_m2 versus MA0219.1 (ems); m=6/10; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 54.6; -----yTAATkR ; cor=0.741; Ncor=0.432; logoDP=3.977; NsEucl=0.875; NSW=0.891; rcor=62; rNcor=38; rlogoDP=62; rNsEucl=54; rNSW=57; rank_mean=54.600; match_rank= a 0 0 0 0 0 3.0 3.0 19.0 19.0 0.0 0.0 14.0 c 0 0 0 0 0 7.0 0.0 0.0 0.0 0.0 1.0 0.0 g 0 0 0 0 0 1.0 0.0 0.0 1.0 0.0 10.0 6.0 t 0 0 0 0 0 9.0 17.0 1.0 0.0 20.0 9.0 0.0

MA0209.1_shift5 (ap) 0.719 0.419 4.584 0.860 0.863 66 53 56 66 65 61.200
; oligos_7nt_mkv5_m2 versus MA0209.1 (ap); m=7/10; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 61.2; -----yTAATKA ; cor=0.719; Ncor=0.419; logoDP=4.584; NsEucl=0.860; NSW=0.863; rcor=66; rNcor=53; rlogoDP=56; rNsEucl=66; rNSW=65; rank_mean=61.200; match_rank= a 0 0 0 0 0 2.0 1.0 19.0 19.0 0.0 0.0 16.0 c 0 0 0 0 0 10.0 0.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 6.0 3.0 t 0 0 0 0 0 7.0 18.0 0.0 0.0 19.0 13.0 0.0

MA0221.1_shift5 (eve) 0.719 0.419 3.840 0.867 0.877 67 54 64 61 62 61.600
; oligos_7nt_mkv5_m2 versus MA0221.1 (eve); m=8/10; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 61.6; -----yTAATkA ; cor=0.719; Ncor=0.419; logoDP=3.840; NsEucl=0.867; NSW=0.877; rcor=67; rNcor=54; rlogoDP=64; rNsEucl=61; rNSW=62; rank_mean=61.600; match_rank= a 0 0 0 0 0 3.0 1.0 22.0 22.0 0.0 0.0 17.0 c 0 0 0 0 0 10.0 0.0 0.0 0.0 2.0 2.0 0.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 1.0 11.0 4.0 t 0 0 0 0 0 9.0 21.0 0.0 0.0 19.0 9.0 1.0

MA0256.1_shift5 (zen) 0.715 0.417 4.614 0.854 0.850 69 57 55 70 69 64.000
; oligos_7nt_mkv5_m2 versus MA0256.1 (zen); m=9/10; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 64; -----yTAATKA ; cor=0.715; Ncor=0.417; logoDP=4.614; NsEucl=0.854; NSW=0.850; rcor=69; rNcor=57; rlogoDP=55; rNsEucl=70; rNSW=69; rank_mean=64.000; match_rank= a 0 0 0 0 0 2.0 0.0 16.0 16.0 0.0 0.0 16.0 c 0 0 0 0 0 9.0 0.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 11.0 0.0 t 0 0 0 0 0 5.0 16.0 0.0 0.0 16.0 5.0 0.0

MA0228.1_shift5 (ind) 0.705 0.411 4.460 0.855 0.852 70 66 58 69 68 66.200
; oligos_7nt_mkv5_m2 versus MA0228.1 (ind); m=10/10; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 66.2; -----yTAATkA ; cor=0.705; Ncor=0.411; logoDP=4.460; NsEucl=0.855; NSW=0.852; rcor=70; rNcor=66; rlogoDP=58; rNsEucl=69; rNSW=68; rank_mean=66.200; match_rank= a 0 0 0 0 0 0.0 0.0 21.0 21.0 0.0 0.0 19.0 c 0 0 0 0 0 12.0 0.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 1.0 8.0 2.0 t 0 0 0 0 0 9.0 21.0 0.0 0.0 20.0 13.0 0.0

Matrix name	cor	Ncor	logoDP	NsEucl	NSW	rcor	rNcor	rlogoDP	rNsEucl	rNSW	rank_mean	match_rank	Aligned matrices
oligos_7nt_mkv5_m2_shift0 (oligos_7nt_mkv5_m2)													; oligos_7nt_mkv5_m2; m=0 (reference); ncol1=12; shift=0; ncol=12; wtATGCAAATgw ; Alignment reference a 251 131 562 0 6 2 417 423 563 3 134 181 c 38 102 1 3 0 468 3 10 1 13 74 115 g 69 72 2 0 554 2 7 101 1 5 241 109 t 207 260 0 562 5 93 138 31 0 544 116 160
MA0197.3_shift1 (nub)	0.939	0.861	8.605	0.949	0.971	3	1	3	2	3	2.400	2	; oligos_7nt_mkv5_m2 versus MA0197.3 (nub); m=1/10; ncol2=11; w=0; offset=1; strand=D; shift=1; score= 2.4; -TATGyAAATka ; cor=0.939; Ncor=0.861; logoDP=8.605; NsEucl=0.949; NSW=0.971; rcor=3; rNcor=1; rlogoDP=3; rNsEucl=2; rNSW=3; rank_mean=2.400; match_rank=2 a 0 2.0 29.0 0.0 0.0 0.0 24.0 28.0 28.0 4.0 6.0 19.0 c 0 1.0 0.0 0.0 0.0 19.0 0.0 0.0 0.0 1.0 5.0 5.0 g 0 1.0 0.0 0.0 25.0 1.0 0.0 1.0 0.0 0.0 8.0 1.0 t 0 25.0 0.0 29.0 4.0 9.0 5.0 0.0 1.0 24.0 10.0 4.0
MA1702.2_shift0 (Pdp1)	0.873	0.582	5.043	0.908	0.932	26	4	43	17	27	23.400	17	; oligos_7nt_mkv5_m2 versus MA1702.2 (Pdp1); m=2/10; ncol2=8; w=0; offset=0; strand=D; shift=0; score= 23.4; TTATGYAA---- ; cor=0.873; Ncor=0.582; logoDP=5.043; NsEucl=0.908; NSW=0.932; rcor=26; rNcor=4; rlogoDP=43; rNsEucl=17; rNSW=27; rank_mean=23.400; match_rank=17 a 126.0 110.0 4468.0 109.0 331.0 154.0 4598.0 4606.0 0 0 0 0 c 46.0 49.0 35.0 340.0 76.0 3282.0 88.0 60.0 0 0 0 0 g 64.0 119.0 218.0 74.0 4221.0 79.0 71.0 68.0 0 0 0 0 t 4580.0 4538.0 95.0 4293.0 188.0 1301.0 59.0 82.0 0 0 0 0
MA2267.1_shift3 (rib)	0.716	0.537	6.242	0.879	0.868	68	9	9	51	63	40.000	40	; oligos_7nt_mkv5_m2 versus MA2267.1 (rib); m=3/10; ncol2=9; w=0; offset=3; strand=D; shift=3; score= 40; ---yGCrAAAww ; cor=0.716; Ncor=0.537; logoDP=6.242; NsEucl=0.879; NSW=0.868; rcor=68; rNcor=9; rlogoDP=9; rNsEucl=51; rNSW=63; rank_mean=40.000; match_rank=40 a 0 0 0 0.0 0.0 0.0 647.05882352941 1000.0 1000.0 764.70588235294 529.41176470588 500.0 c 0 0 0 529.41176470588 0.0 1000.0 0.0 0.0 0.0 0.0 117.64705882353 0.0 g 0 0 0 0.0 1000.0 0.0 352.94117647059 0.0 0.0 0.0 0.0 125.0 t 0 0 0 470.58823529412 0.0 0.0 0.0 0.0 0.0 235.29411764706 352.94117647059 375.0
MA0254.1_shift1 (vvl)	0.827	0.414	3.980	0.881	0.915	50	62	61	46	43	52.400		; oligos_7nt_mkv5_m2 versus MA0254.1 (vvl); m=4/10; ncol2=6; w=0; offset=1; strand=D; shift=1; score= 52.4; -TAtkMA----- ; cor=0.827; Ncor=0.414; logoDP=3.980; NsEucl=0.881; NSW=0.915; rcor=50; rNcor=62; rlogoDP=61; rNsEucl=46; rNSW=43; rank_mean=52.400; match_rank= a 0 0.0 11.0 2.0 0.0 3.0 11.0 0 0 0 0 0 c 0 2.0 0.0 2.0 0.0 8.0 0.0 0 0 0 0 0 g 0 0.0 0.0 0.0 6.0 0.0 0.0 0 0 0 0 0 t 0 9.0 0.0 7.0 5.0 0.0 0.0 0 0 0 0 0
MA0173.1_rc_shift2 (CG11617_rc)	0.783	0.457	2.722	0.861	0.865	60	20	65	64	64	54.600		; oligos_7nt_mkv5_m2 versus MA0173.1_rc (CG11617_rc); m=5/10; ncol2=7; w=0; offset=2; strand=R; shift=2; score= 54.6; --ATGTtAA--- ; cor=0.783; Ncor=0.457; logoDP=2.722; NsEucl=0.861; NSW=0.865; rcor=60; rNcor=20; rlogoDP=65; rNsEucl=64; rNSW=64; rank_mean=54.600; match_rank= a 0 0 17.0 0.0 0.0 0.0 4.0 17.0 16.0 0 0 0 c 0 0 0.0 0.0 0.0 0.0 3.0 0.0 0.0 0 0 0 g 0 0 0.0 0.0 17.0 0.0 0.0 0.0 0.0 0 0 0 t 0 0 0.0 17.0 0.0 17.0 10.0 0.0 1.0 0 0 0
MA0219.1_shift5 (ems)	0.741	0.432	3.977	0.875	0.891	62	38	62	54	57	54.600		; oligos_7nt_mkv5_m2 versus MA0219.1 (ems); m=6/10; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 54.6; -----yTAATkR ; cor=0.741; Ncor=0.432; logoDP=3.977; NsEucl=0.875; NSW=0.891; rcor=62; rNcor=38; rlogoDP=62; rNsEucl=54; rNSW=57; rank_mean=54.600; match_rank= a 0 0 0 0 0 3.0 3.0 19.0 19.0 0.0 0.0 14.0 c 0 0 0 0 0 7.0 0.0 0.0 0.0 0.0 1.0 0.0 g 0 0 0 0 0 1.0 0.0 0.0 1.0 0.0 10.0 6.0 t 0 0 0 0 0 9.0 17.0 1.0 0.0 20.0 9.0 0.0
MA0209.1_shift5 (ap)	0.719	0.419	4.584	0.860	0.863	66	53	56	66	65	61.200		; oligos_7nt_mkv5_m2 versus MA0209.1 (ap); m=7/10; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 61.2; -----yTAATKA ; cor=0.719; Ncor=0.419; logoDP=4.584; NsEucl=0.860; NSW=0.863; rcor=66; rNcor=53; rlogoDP=56; rNsEucl=66; rNSW=65; rank_mean=61.200; match_rank= a 0 0 0 0 0 2.0 1.0 19.0 19.0 0.0 0.0 16.0 c 0 0 0 0 0 10.0 0.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 6.0 3.0 t 0 0 0 0 0 7.0 18.0 0.0 0.0 19.0 13.0 0.0
MA0221.1_shift5 (eve)	0.719	0.419	3.840	0.867	0.877	67	54	64	61	62	61.600		; oligos_7nt_mkv5_m2 versus MA0221.1 (eve); m=8/10; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 61.6; -----yTAATkA ; cor=0.719; Ncor=0.419; logoDP=3.840; NsEucl=0.867; NSW=0.877; rcor=67; rNcor=54; rlogoDP=64; rNsEucl=61; rNSW=62; rank_mean=61.600; match_rank= a 0 0 0 0 0 3.0 1.0 22.0 22.0 0.0 0.0 17.0 c 0 0 0 0 0 10.0 0.0 0.0 0.0 2.0 2.0 0.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 1.0 11.0 4.0 t 0 0 0 0 0 9.0 21.0 0.0 0.0 19.0 9.0 1.0
MA0256.1_shift5 (zen)	0.715	0.417	4.614	0.854	0.850	69	57	55	70	69	64.000		; oligos_7nt_mkv5_m2 versus MA0256.1 (zen); m=9/10; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 64; -----yTAATKA ; cor=0.715; Ncor=0.417; logoDP=4.614; NsEucl=0.854; NSW=0.850; rcor=69; rNcor=57; rlogoDP=55; rNsEucl=70; rNSW=69; rank_mean=64.000; match_rank= a 0 0 0 0 0 2.0 0.0 16.0 16.0 0.0 0.0 16.0 c 0 0 0 0 0 9.0 0.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 11.0 0.0 t 0 0 0 0 0 5.0 16.0 0.0 0.0 16.0 5.0 0.0
MA0228.1_shift5 (ind)	0.705	0.411	4.460	0.855	0.852	70	66	58	69	68	66.200		; oligos_7nt_mkv5_m2 versus MA0228.1 (ind); m=10/10; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 66.2; -----yTAATkA ; cor=0.705; Ncor=0.411; logoDP=4.460; NsEucl=0.855; NSW=0.852; rcor=70; rNcor=66; rlogoDP=58; rNsEucl=69; rNSW=68; rank_mean=66.200; match_rank= a 0 0 0 0 0 0.0 0.0 21.0 21.0 0.0 0.0 19.0 c 0 0 0 0 0 12.0 0.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 1.0 8.0 2.0 t 0 0 0 0 0 9.0 21.0 0.0 0.0 20.0 13.0 0.0

One-to-n matrix alignment; reference matrix: positions_7nt_m1_shift0 ; 3 matrices ; sort_field=rank_mean

Matrix name Aligned logos cor Ncor logoDP NsEucl NSW rcor rNcor rlogoDP rNsEucl rNSW rank_mean match_rank Aligned matrices
positions_7nt_m1_shift0 (positions_7nt_m1)
; positions_7nt_m1; m=0 (reference); ncol1=20; shift=0; ncol=20; byCwTTGwyATGCAaATGdr ; Alignment reference a 29 20 12 113 0 3 10 70 23 224 0 0 2 201 153 220 16 34 71 77 c 63 93 168 6 7 3 29 3 63 0 1 0 205 1 5 5 10 17 33 49 g 66 58 17 1 3 5 182 2 21 4 0 231 8 3 49 5 13 160 62 75 t 75 62 36 113 223 222 12 158 126 5 232 2 18 28 26 3 194 22 67 32

MA0197.3_shift8 (nub) 0.913 0.502 7.744 0.939 0.959 9 12 5 3 7 7.200 3
; positions_7nt_m1 versus MA0197.3 (nub); m=1/2; ncol2=11; w=0; offset=8; strand=D; shift=8; score= 7.2; --------TATGyAAATka- ; cor=0.913; Ncor=0.502; logoDP=7.744; NsEucl=0.939; NSW=0.959; rcor=9; rNcor=12; rlogoDP=5; rNsEucl=3; rNSW=7; rank_mean=7.200; match_rank=3 a 0 0 0 0 0 0 0 0 2.0 29.0 0.0 0.0 0.0 24.0 28.0 28.0 4.0 6.0 19.0 0 c 0 0 0 0 0 0 0 0 1.0 0.0 0.0 0.0 19.0 0.0 0.0 0.0 1.0 5.0 5.0 0 g 0 0 0 0 0 0 0 0 1.0 0.0 0.0 25.0 1.0 0.0 1.0 0.0 0.0 8.0 1.0 0 t 0 0 0 0 0 0 0 0 25.0 0.0 29.0 4.0 9.0 5.0 0.0 1.0 24.0 10.0 4.0 0

MA0445.1_shift0 (D) 0.786 0.433 4.858 0.912 0.915 59 37 51 9 44 40.000 41
; positions_7nt_m1 versus MA0445.1 (D); m=2/2; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 40; yCyWTTGTTyT--------- ; cor=0.786; Ncor=0.433; logoDP=4.858; NsEucl=0.912; NSW=0.915; rcor=59; rNcor=37; rlogoDP=51; rNsEucl=9; rNSW=44; rank_mean=40.000; match_rank=41 a 1.0 0.0 0.0 20.0 0.0 0.0 2.0 0.0 1.0 4.0 6.0 0 0 0 0 0 0 0 0 0 c 8.0 25.0 17.0 0.0 0.0 0.0 0.0 0.0 2.0 10.0 1.0 0 0 0 0 0 0 0 0 0 g 7.0 0.0 0.0 0.0 0.0 3.0 27.0 0.0 4.0 6.0 1.0 0 0 0 0 0 0 0 0 0 t 13.0 4.0 12.0 9.0 29.0 26.0 0.0 29.0 22.0 9.0 21.0 0 0 0 0 0 0 0 0 0

Matrix name	cor	Ncor	logoDP	NsEucl	NSW	rcor	rNcor	rlogoDP	rNsEucl	rNSW	rank_mean	match_rank	Aligned matrices
positions_7nt_m1_shift0 (positions_7nt_m1)													; positions_7nt_m1; m=0 (reference); ncol1=20; shift=0; ncol=20; byCwTTGwyATGCAaATGdr ; Alignment reference a 29 20 12 113 0 3 10 70 23 224 0 0 2 201 153 220 16 34 71 77 c 63 93 168 6 7 3 29 3 63 0 1 0 205 1 5 5 10 17 33 49 g 66 58 17 1 3 5 182 2 21 4 0 231 8 3 49 5 13 160 62 75 t 75 62 36 113 223 222 12 158 126 5 232 2 18 28 26 3 194 22 67 32
MA0197.3_shift8 (nub)	0.913	0.502	7.744	0.939	0.959	9	12	5	3	7	7.200	3	; positions_7nt_m1 versus MA0197.3 (nub); m=1/2; ncol2=11; w=0; offset=8; strand=D; shift=8; score= 7.2; --------TATGyAAATka- ; cor=0.913; Ncor=0.502; logoDP=7.744; NsEucl=0.939; NSW=0.959; rcor=9; rNcor=12; rlogoDP=5; rNsEucl=3; rNSW=7; rank_mean=7.200; match_rank=3 a 0 0 0 0 0 0 0 0 2.0 29.0 0.0 0.0 0.0 24.0 28.0 28.0 4.0 6.0 19.0 0 c 0 0 0 0 0 0 0 0 1.0 0.0 0.0 0.0 19.0 0.0 0.0 0.0 1.0 5.0 5.0 0 g 0 0 0 0 0 0 0 0 1.0 0.0 0.0 25.0 1.0 0.0 1.0 0.0 0.0 8.0 1.0 0 t 0 0 0 0 0 0 0 0 25.0 0.0 29.0 4.0 9.0 5.0 0.0 1.0 24.0 10.0 4.0 0
MA0445.1_shift0 (D)	0.786	0.433	4.858	0.912	0.915	59	37	51	9	44	40.000	41	; positions_7nt_m1 versus MA0445.1 (D); m=2/2; ncol2=11; w=0; offset=0; strand=D; shift=0; score= 40; yCyWTTGTTyT--------- ; cor=0.786; Ncor=0.433; logoDP=4.858; NsEucl=0.912; NSW=0.915; rcor=59; rNcor=37; rlogoDP=51; rNsEucl=9; rNSW=44; rank_mean=40.000; match_rank=41 a 1.0 0.0 0.0 20.0 0.0 0.0 2.0 0.0 1.0 4.0 6.0 0 0 0 0 0 0 0 0 0 c 8.0 25.0 17.0 0.0 0.0 0.0 0.0 0.0 2.0 10.0 1.0 0 0 0 0 0 0 0 0 0 g 7.0 0.0 0.0 0.0 0.0 3.0 27.0 0.0 4.0 6.0 1.0 0 0 0 0 0 0 0 0 0 t 13.0 4.0 12.0 9.0 29.0 26.0 0.0 29.0 22.0 9.0 21.0 0 0 0 0 0 0 0 0 0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m3_shift0 ; 50 matrices ; sort_field=rank_mean

Matrix name Aligned logos cor Ncor logoDP NsEucl NSW rcor rNcor rlogoDP rNsEucl rNSW rank_mean match_rank Aligned matrices
oligos_7nt_mkv5_m3_shift0 (oligos_7nt_mkv5_m3)
; oligos_7nt_mkv5_m3; m=0 (reference); ncol1=11; shift=0; ncol=11; wtATGyTAAtk ; Alignment reference a 95 61 246 0 0 1 19 245 246 53 60 c 25 46 0 2 0 166 0 0 0 35 32 g 33 47 0 0 245 0 1 0 0 31 75 t 93 92 0 244 1 79 226 1 0 127 79

MA0228.1_shift5 (ind) 0.933 0.466 5.571 0.919 0.961 5 16 11 8 5 9.000 4
; oligos_7nt_mkv5_m3 versus MA0228.1 (ind); m=1/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 9; -----yTAATk ; cor=0.933; Ncor=0.466; logoDP=5.571; NsEucl=0.919; NSW=0.961; rcor=5; rNcor=16; rlogoDP=11; rNsEucl=8; rNSW=5; rank_mean=9.000; match_rank=4 a 0 0 0 0 0 0.0 0.0 21.0 21.0 0.0 0.0 c 0 0 0 0 0 12.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 1.0 8.0 t 0 0 0 0 0 9.0 21.0 0.0 0.0 20.0 13.0

MA0256.1_shift5 (zen) 0.916 0.458 5.478 0.910 0.952 7 18 17 11 9 12.400 5
; oligos_7nt_mkv5_m3 versus MA0256.1 (zen); m=2/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 12.4; -----yTAATK ; cor=0.916; Ncor=0.458; logoDP=5.478; NsEucl=0.910; NSW=0.952; rcor=7; rNcor=18; rlogoDP=17; rNsEucl=11; rNSW=9; rank_mean=12.400; match_rank=5 a 0 0 0 0 0 2.0 0.0 16.0 16.0 0.0 0.0 c 0 0 0 0 0 9.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 11.0 t 0 0 0 0 0 5.0 16.0 0.0 0.0 16.0 5.0

MA0221.1_shift5 (eve) 0.938 0.469 5.156 0.929 0.970 4 14 40 6 4 13.600 7
; oligos_7nt_mkv5_m3 versus MA0221.1 (eve); m=3/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 13.6; -----yTAATk ; cor=0.938; Ncor=0.469; logoDP=5.156; NsEucl=0.929; NSW=0.970; rcor=4; rNcor=14; rlogoDP=40; rNsEucl=6; rNSW=4; rank_mean=13.600; match_rank=7 a 0 0 0 0 0 3.0 1.0 22.0 22.0 0.0 0.0 c 0 0 0 0 0 10.0 0.0 0.0 0.0 2.0 2.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 1.0 11.0 t 0 0 0 0 0 9.0 21.0 0.0 0.0 19.0 9.0

MA0209.1_shift5 (ap) 0.915 0.458 5.214 0.912 0.953 8 19 39 10 8 16.800 8
; oligos_7nt_mkv5_m3 versus MA0209.1 (ap); m=4/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 16.8; -----yTAATK ; cor=0.915; Ncor=0.458; logoDP=5.214; NsEucl=0.912; NSW=0.953; rcor=8; rNcor=19; rlogoDP=39; rNsEucl=10; rNSW=8; rank_mean=16.800; match_rank=8 a 0 0 0 0 0 2.0 1.0 19.0 19.0 0.0 0.0 c 0 0 0 0 0 10.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 6.0 t 0 0 0 0 0 7.0 18.0 0.0 0.0 19.0 13.0

MA0238.1_shift5 (pb) 0.906 0.453 5.429 0.908 0.949 12 22 23 16 13 17.200 9
; oligos_7nt_mkv5_m3 versus MA0238.1 (pb); m=5/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 17.2; -----yTAATk ; cor=0.906; Ncor=0.453; logoDP=5.429; NsEucl=0.908; NSW=0.949; rcor=12; rNcor=22; rlogoDP=23; rNsEucl=16; rNSW=13; rank_mean=17.200; match_rank=9 a 0 0 0 0 0 4.0 0.0 24.0 24.0 0.0 0.0 c 0 0 0 0 0 9.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 11.0 t 0 0 0 0 0 11.0 24.0 0.0 0.0 24.0 13.0

MA0177.1_shift5 (CG18599) 0.906 0.453 5.388 0.908 0.949 11 21 31 15 12 18.000 10
; oligos_7nt_mkv5_m3 versus MA0177.1 (CG18599); m=6/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 18; -----yTAATk ; cor=0.906; Ncor=0.453; logoDP=5.388; NsEucl=0.908; NSW=0.949; rcor=11; rNcor=21; rlogoDP=31; rNsEucl=15; rNSW=12; rank_mean=18.000; match_rank=10 a 0 0 0 0 0 4.0 0.0 25.0 25.0 0.0 0.0 c 0 0 0 0 0 10.0 0.0 0.0 0.0 0.0 1.0 g 0 0 0 0 0 1.0 0.0 0.0 0.0 0.0 8.0 t 0 0 0 0 0 10.0 25.0 0.0 0.0 25.0 16.0

MA0175.1_shift5 (lms) 0.899 0.449 5.409 0.904 0.945 13 23 26 19 15 19.200 11
; oligos_7nt_mkv5_m3 versus MA0175.1 (lms); m=7/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 19.2; -----yTAATt ; cor=0.899; Ncor=0.449; logoDP=5.409; NsEucl=0.904; NSW=0.945; rcor=13; rNcor=23; rlogoDP=26; rNsEucl=19; rNSW=15; rank_mean=19.200; match_rank=11 a 0 0 0 0 0 2.0 0.0 21.0 21.0 0.0 3.0 c 0 0 0 0 0 7.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 1.0 0.0 0.0 0.0 0.0 4.0 t 0 0 0 0 0 11.0 21.0 0.0 0.0 21.0 14.0

MA0197.3_shift1 (nub) 0.837 0.697 8.741 0.910 0.919 44 3 2 12 39 20.000 13
; oligos_7nt_mkv5_m3 versus MA0197.3 (nub); m=8/49; ncol2=11; w=0; offset=1; strand=D; shift=1; score= 20; -TATGyAAATk ; cor=0.837; Ncor=0.697; logoDP=8.741; NsEucl=0.910; NSW=0.919; rcor=44; rNcor=3; rlogoDP=2; rNsEucl=12; rNSW=39; rank_mean=20.000; match_rank=13 a 0 2.0 29.0 0.0 0.0 0.0 24.0 28.0 28.0 4.0 6.0 c 0 1.0 0.0 0.0 0.0 19.0 0.0 0.0 0.0 1.0 5.0 g 0 1.0 0.0 0.0 25.0 1.0 0.0 1.0 0.0 0.0 8.0 t 0 25.0 0.0 29.0 4.0 9.0 5.0 0.0 1.0 24.0 10.0

MA0171.1_shift5 (CG11085) 0.884 0.442 5.537 0.898 0.937 18 28 13 24 20 20.600 14
; oligos_7nt_mkv5_m3 versus MA0171.1 (CG11085); m=9/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 20.6; -----TTAATt ; cor=0.884; Ncor=0.442; logoDP=5.537; NsEucl=0.898; NSW=0.937; rcor=18; rNcor=28; rlogoDP=13; rNsEucl=24; rNSW=20; rank_mean=20.600; match_rank=14 a 0 0 0 0 0 0.0 0.0 13.0 13.0 1.0 2.0 c 0 0 0 0 0 3.0 0.0 0.0 0.0 0.0 1.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 2.0 t 0 0 0 0 0 10.0 13.0 0.0 0.0 12.0 8.0

MA0181.1_shift5 (Vsx1) 0.889 0.445 5.448 0.898 0.937 15 25 21 25 21 21.400 15
; oligos_7nt_mkv5_m3 versus MA0181.1 (Vsx1); m=10/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 21.4; -----yTAATT ; cor=0.889; Ncor=0.445; logoDP=5.448; NsEucl=0.898; NSW=0.937; rcor=15; rNcor=25; rlogoDP=21; rNsEucl=25; rNSW=21; rank_mean=21.400; match_rank=15 a 0 0 0 0 0 1.0 0.0 22.0 22.0 0.0 2.0 c 0 0 0 0 0 8.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 1.0 0.0 0.0 0.0 0.0 3.0 t 0 0 0 0 0 12.0 22.0 0.0 0.0 22.0 17.0

MA0214.1_shift5 (bsh) 0.886 0.443 5.373 0.902 0.943 17 27 32 21 17 22.800 16
; oligos_7nt_mkv5_m3 versus MA0214.1 (bsh); m=11/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 22.8; -----tTAATk ; cor=0.886; Ncor=0.443; logoDP=5.373; NsEucl=0.902; NSW=0.943; rcor=17; rNcor=27; rlogoDP=32; rNsEucl=21; rNSW=17; rank_mean=22.800; match_rank=16 a 0 0 0 0 0 1.0 0.0 16.0 16.0 0.0 0.0 c 0 0 0 0 0 3.0 0.0 0.0 0.0 1.0 3.0 g 0 0 0 0 0 2.0 0.0 0.0 0.0 0.0 6.0 t 0 0 0 0 0 10.0 16.0 0.0 0.0 15.0 7.0

MA0232.1_shift6 (lbl) 0.960 0.400 5.255 0.932 0.977 2 71 38 4 2 23.400 18
; oligos_7nt_mkv5_m3 versus MA0232.1 (lbl); m=12/49; ncol2=6; w=0; offset=6; strand=D; shift=6; score= 23.4; ------TAATk ; cor=0.960; Ncor=0.400; logoDP=5.255; NsEucl=0.932; NSW=0.977; rcor=2; rNcor=71; rlogoDP=38; rNsEucl=4; rNSW=2; rank_mean=23.400; match_rank=18 a 0 0 0 0 0 0 0.0 23.0 23.0 0.0 1.0 c 0 0 0 0 0 0 0.0 0.0 0.0 5.0 3.0 g 0 0 0 0 0 0 0.0 0.0 0.0 0.0 7.0 t 0 0 0 0 0 0 23.0 0.0 0.0 18.0 12.0

MA0241.1_shift5 (ro) 0.889 0.445 5.420 0.896 0.935 16 26 25 27 23 23.400 19
; oligos_7nt_mkv5_m3 versus MA0241.1 (ro); m=13/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 23.4; -----yTAATT ; cor=0.889; Ncor=0.445; logoDP=5.420; NsEucl=0.896; NSW=0.935; rcor=16; rNcor=26; rlogoDP=25; rNsEucl=27; rNSW=23; rank_mean=23.400; match_rank=19 a 0 0 0 0 0 1.0 0.0 23.0 23.0 0.0 0.0 c 0 0 0 0 0 12.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 3.0 0.0 0.0 0.0 0.0 3.0 t 0 0 0 0 0 7.0 23.0 0.0 0.0 23.0 20.0

MA0219.1_shift5 (ems) 0.890 0.445 4.121 0.909 0.950 14 24 60 14 11 24.600 20
; oligos_7nt_mkv5_m3 versus MA0219.1 (ems); m=14/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 24.6; -----yTAATk ; cor=0.890; Ncor=0.445; logoDP=4.121; NsEucl=0.909; NSW=0.950; rcor=14; rNcor=24; rlogoDP=60; rNsEucl=14; rNSW=11; rank_mean=24.600; match_rank=20 a 0 0 0 0 0 3.0 3.0 19.0 19.0 0.0 0.0 c 0 0 0 0 0 7.0 0.0 0.0 0.0 0.0 1.0 g 0 0 0 0 0 1.0 0.0 0.0 1.0 0.0 10.0 t 0 0 0 0 0 9.0 17.0 1.0 0.0 20.0 9.0

MA0168.1_shift5 (B-H1) 0.875 0.437 5.354 0.901 0.941 24 32 34 22 18 26.000 21
; oligos_7nt_mkv5_m3 versus MA0168.1 (B-H1); m=15/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 26; -----tTAAwy ; cor=0.875; Ncor=0.437; logoDP=5.354; NsEucl=0.901; NSW=0.941; rcor=24; rNcor=32; rlogoDP=34; rNsEucl=22; rNSW=18; rank_mean=26.000; match_rank=21 a 0 0 0 0 0 4.0 0.0 21.0 21.0 8.0 1.0 c 0 0 0 0 0 4.0 0.0 0.0 0.0 0.0 7.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 t 0 0 0 0 0 13.0 21.0 0.0 0.0 13.0 13.0

MA0196.1_shift5 (NK7.1) 0.881 0.441 4.963 0.904 0.945 20 29 48 20 16 26.600 22
; oligos_7nt_mkv5_m3 versus MA0196.1 (NK7.1); m=16/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 26.6; -----TTAATt ; cor=0.881; Ncor=0.441; logoDP=4.963; NsEucl=0.904; NSW=0.945; rcor=20; rNcor=29; rlogoDP=48; rNsEucl=20; rNSW=16; rank_mean=26.600; match_rank=22 a 0 0 0 0 0 5.0 0.0 33.0 35.0 4.0 6.0 c 0 0 0 0 0 5.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 1.0 0.0 2.0 0.0 5.0 7.0 t 0 0 0 0 0 24.0 35.0 0.0 0.0 26.0 22.0

MA0203.1_shift5 (Scr) 0.876 0.438 5.455 0.893 0.931 23 31 19 33 28 26.800 23
; oligos_7nt_mkv5_m3 versus MA0203.1 (Scr); m=17/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 26.8; -----yTAATK ; cor=0.876; Ncor=0.438; logoDP=5.455; NsEucl=0.893; NSW=0.931; rcor=23; rNcor=31; rlogoDP=19; rNsEucl=33; rNSW=28; rank_mean=26.800; match_rank=23 a 0 0 0 0 0 3.0 0.0 25.0 25.0 0.0 0.0 c 0 0 0 0 0 7.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 18.0 t 0 0 0 0 0 15.0 25.0 0.0 0.0 25.0 7.0

MA0230.1_shift5 (lab) 0.871 0.436 5.482 0.891 0.929 28 35 15 34 29 28.200 24
; oligos_7nt_mkv5_m3 versus MA0230.1 (lab); m=18/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 28.2; -----TTAATk ; cor=0.871; Ncor=0.436; logoDP=5.482; NsEucl=0.891; NSW=0.929; rcor=28; rNcor=35; rlogoDP=15; rNsEucl=34; rNSW=29; rank_mean=28.200; match_rank=24 a 0 0 0 0 0 1.0 0.0 16.0 16.0 1.0 0.0 c 0 0 0 0 0 3.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 6.0 t 0 0 0 0 0 12.0 16.0 0.0 0.0 15.0 10.0

MA0236.1_shift5 (otp) 0.877 0.438 5.152 0.895 0.934 22 30 41 29 24 29.200 26
; oligos_7nt_mkv5_m3 versus MA0236.1 (otp); m=19/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 29.2; -----yTAATT ; cor=0.877; Ncor=0.438; logoDP=5.152; NsEucl=0.895; NSW=0.934; rcor=22; rNcor=30; rlogoDP=41; rNsEucl=29; rNSW=24; rank_mean=29.200; match_rank=26 a 0 0 0 0 0 1.0 0.0 20.0 20.0 0.0 0.0 c 0 0 0 0 0 6.0 1.0 0.0 0.0 0.0 1.0 g 0 0 0 0 0 2.0 0.0 0.0 0.0 0.0 4.0 t 0 0 0 0 0 11.0 19.0 0.0 0.0 20.0 15.0

MA0248.1_shift5 (tup) 0.873 0.437 5.032 0.900 0.940 27 34 45 23 19 29.600 27
; oligos_7nt_mkv5_m3 versus MA0248.1 (tup); m=20/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 29.6; -----wTAATk ; cor=0.873; Ncor=0.437; logoDP=5.032; NsEucl=0.900; NSW=0.940; rcor=27; rNcor=34; rlogoDP=45; rNsEucl=23; rNSW=19; rank_mean=29.600; match_rank=27 a 0 0 0 0 0 4.0 1.0 16.0 16.0 0.0 1.0 c 0 0 0 0 0 2.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 1.0 0.0 0.0 0.0 2.0 7.0 t 0 0 0 0 0 9.0 15.0 0.0 0.0 14.0 8.0

MA0173.1_rc_shift2 (CG11617_rc) 0.882 0.561 3.920 0.895 0.922 19 5 63 31 33 30.200 29
; oligos_7nt_mkv5_m3 versus MA0173.1_rc (CG11617_rc); m=21/49; ncol2=7; w=0; offset=2; strand=R; shift=2; score= 30.2; --ATGTtAA-- ; cor=0.882; Ncor=0.561; logoDP=3.920; NsEucl=0.895; NSW=0.922; rcor=19; rNcor=5; rlogoDP=63; rNsEucl=31; rNSW=33; rank_mean=30.200; match_rank=29 a 0 0 17.0 0.0 0.0 0.0 4.0 17.0 16.0 0 0 c 0 0 0.0 0.0 0.0 0.0 3.0 0.0 0.0 0 0 g 0 0 0.0 0.0 17.0 0.0 0.0 0.0 0.0 0 0 t 0 0 0.0 17.0 0.0 17.0 10.0 0.0 1.0 0 0

MA0245.1_shift5 (slou) 0.874 0.437 4.828 0.897 0.937 25 33 53 26 22 31.800 31
; oligos_7nt_mkv5_m3 versus MA0245.1 (slou); m=22/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 31.8; -----tTAATt ; cor=0.874; Ncor=0.437; logoDP=4.828; NsEucl=0.897; NSW=0.937; rcor=25; rNcor=33; rlogoDP=53; rNsEucl=26; rNSW=22; rank_mean=31.800; match_rank=31 a 0 0 0 0 0 3.0 0.0 22.0 21.0 0.0 2.0 c 0 0 0 0 0 5.0 1.0 0.0 0.0 0.0 1.0 g 0 0 0 0 0 1.0 0.0 0.0 1.0 0.0 5.0 t 0 0 0 0 0 13.0 21.0 0.0 0.0 22.0 14.0

MA0457.2_shift5 (PHDP) 0.859 0.468 5.016 0.887 0.923 34 15 46 37 31 32.600 32
; oligos_7nt_mkv5_m3 versus MA0457.2 (PHDP); m=23/49; ncol2=6; w=0; offset=5; strand=D; shift=5; score= 32.6; -----yTAATT ; cor=0.859; Ncor=0.468; logoDP=5.016; NsEucl=0.887; NSW=0.923; rcor=34; rNcor=15; rlogoDP=46; rNsEucl=37; rNSW=31; rank_mean=32.600; match_rank=32 a 0 0 0 0 0 4.0 0.0 16.0 17.0 0.0 1.0 c 0 0 0 0 0 6.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 t 0 0 0 0 0 7.0 17.0 1.0 0.0 17.0 15.0

MA0169.1_shift5 (B-H2) 0.861 0.431 5.320 0.894 0.933 32 41 35 32 26 33.200 33
; oligos_7nt_mkv5_m3 versus MA0169.1 (B-H2); m=24/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 33.2; -----wTAATT ; cor=0.861; Ncor=0.431; logoDP=5.320; NsEucl=0.894; NSW=0.933; rcor=32; rNcor=41; rlogoDP=35; rNsEucl=32; rNSW=26; rank_mean=33.200; match_rank=33 a 0 0 0 0 0 6.0 0.0 21.0 21.0 5.0 3.0 c 0 0 0 0 0 2.0 0.0 0.0 0.0 0.0 1.0 g 0 0 0 0 0 1.0 0.0 0.0 0.0 0.0 2.0 t 0 0 0 0 0 12.0 21.0 0.0 0.0 16.0 15.0

MA0202.1_shift5 (Rx) 0.862 0.431 5.475 0.881 0.915 31 40 18 45 42 35.200 34
; oligos_7nt_mkv5_m3 versus MA0202.1 (Rx); m=25/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 35.2; -----yTAATT ; cor=0.862; Ncor=0.431; logoDP=5.475; NsEucl=0.881; NSW=0.915; rcor=31; rNcor=40; rlogoDP=18; rNsEucl=45; rNSW=42; rank_mean=35.200; match_rank=34 a 0 0 0 0 0 3.0 0.0 27.0 27.0 0.0 0.0 c 0 0 0 0 0 13.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 t 0 0 0 0 0 11.0 27.0 0.0 0.0 27.0 27.0

MA0167.1_shift5 (Awh) 0.869 0.435 4.477 0.895 0.934 29 36 57 30 25 35.400 35
; oligos_7nt_mkv5_m3 versus MA0167.1 (Awh); m=26/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 35.4; -----yTAATT ; cor=0.869; Ncor=0.435; logoDP=4.477; NsEucl=0.895; NSW=0.934; rcor=29; rNcor=36; rlogoDP=57; rNsEucl=30; rNSW=25; rank_mean=35.400; match_rank=35 a 0 0 0 0 0 3.0 1.0 33.0 40.0 0.0 0.0 c 0 0 0 0 0 16.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 0.0 0.0 7.0 0.0 1.0 8.0 t 0 0 0 0 0 21.0 39.0 0.0 0.0 39.0 32.0

MA0220.1_shift5 (en) 0.863 0.432 5.397 0.885 0.921 30 39 29 42 37 35.400 37
; oligos_7nt_mkv5_m3 versus MA0220.1 (en); m=27/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 35.4; -----yTAATT ; cor=0.863; Ncor=0.432; logoDP=5.397; NsEucl=0.885; NSW=0.921; rcor=30; rNcor=39; rlogoDP=29; rNsEucl=42; rNSW=37; rank_mean=35.400; match_rank=37 a 0 0 0 0 0 2.0 0.0 23.0 23.0 0.0 0.0 c 0 0 0 0 0 8.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 2.0 0.0 0.0 0.0 0.0 2.0 t 0 0 0 0 0 11.0 23.0 0.0 0.0 23.0 21.0

MA0191.1_shift5 (HGTX) 0.851 0.425 5.360 0.886 0.922 35 44 33 39 34 37.000 38
; oligos_7nt_mkv5_m3 versus MA0191.1 (HGTX); m=28/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 37; -----tTAATk ; cor=0.851; Ncor=0.425; logoDP=5.360; NsEucl=0.886; NSW=0.922; rcor=35; rNcor=44; rlogoDP=33; rNsEucl=39; rNSW=34; rank_mean=37.000; match_rank=38 a 0 0 0 0 0 4.0 0.0 20.0 20.0 0.0 1.0 c 0 0 0 0 0 2.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 3.0 0.0 0.0 0.0 0.0 6.0 t 0 0 0 0 0 11.0 20.0 0.0 0.0 20.0 13.0

MA0198.1_shift5 (OdsH) 0.860 0.430 5.451 0.881 0.915 33 42 20 47 45 37.400 39
; oligos_7nt_mkv5_m3 versus MA0198.1 (OdsH); m=29/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 37.4; -----yTAATT ; cor=0.860; Ncor=0.430; logoDP=5.451; NsEucl=0.881; NSW=0.915; rcor=33; rNcor=42; rlogoDP=20; rNsEucl=47; rNSW=45; rank_mean=37.400; match_rank=39 a 0 0 0 0 0 0.0 0.0 22.0 22.0 0.0 0.0 c 0 0 0 0 0 11.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 4.0 0.0 0.0 0.0 0.0 0.0 t 0 0 0 0 0 7.0 22.0 0.0 0.0 22.0 22.0

MA0251.1_shift5 (unpg) 0.850 0.425 5.139 0.883 0.917 36 45 42 43 40 41.200 42
; oligos_7nt_mkv5_m3 versus MA0251.1 (unpg); m=30/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 41.2; -----yTAATT ; cor=0.850; Ncor=0.425; logoDP=5.139; NsEucl=0.883; NSW=0.917; rcor=36; rNcor=45; rlogoDP=42; rNsEucl=43; rNSW=40; rank_mean=41.200; match_rank=42 a 0 0 0 0 0 1.0 1.0 21.0 21.0 0.0 0.0 c 0 0 0 0 0 6.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 4.0 0.0 0.0 0.0 0.0 2.0 t 0 0 0 0 0 10.0 20.0 0.0 0.0 21.0 19.0

MA0186.1_shift5 (Dfd) 0.845 0.423 5.425 0.880 0.913 39 49 24 48 46 41.200 43
; oligos_7nt_mkv5_m3 versus MA0186.1 (Dfd); m=31/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 41.2; -----tTAATG ; cor=0.845; Ncor=0.423; logoDP=5.425; NsEucl=0.880; NSW=0.913; rcor=39; rNcor=49; rlogoDP=24; rNsEucl=48; rNSW=46; rank_mean=41.200; match_rank=43 a 0 0 0 0 0 1.0 0.0 24.0 24.0 0.0 1.0 c 0 0 0 0 0 4.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 3.0 0.0 0.0 0.0 0.0 19.0 t 0 0 0 0 0 16.0 24.0 0.0 0.0 24.0 4.0

MA0206.1_shift5 (abd-A) 0.849 0.425 4.867 0.885 0.921 37 46 50 41 36 42.000 44
; oligos_7nt_mkv5_m3 versus MA0206.1 (abd-A); m=32/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 42; -----TTAATk ; cor=0.849; Ncor=0.425; logoDP=4.867; NsEucl=0.885; NSW=0.921; rcor=37; rNcor=46; rlogoDP=50; rNsEucl=41; rNSW=36; rank_mean=42.000; match_rank=44 a 0 0 0 0 0 1.0 0.0 16.0 18.0 1.0 0.0 c 0 0 0 0 0 3.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 6.0 t 0 0 0 0 0 14.0 18.0 2.0 0.0 17.0 12.0

MA0170.1_shift5 (C15) 0.841 0.421 4.849 0.889 0.926 42 52 52 36 30 42.400 45
; oligos_7nt_mkv5_m3 versus MA0170.1 (C15); m=33/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 42.4; -----TTAAwk ; cor=0.841; Ncor=0.421; logoDP=4.849; NsEucl=0.889; NSW=0.926; rcor=42; rNcor=52; rlogoDP=52; rNsEucl=36; rNSW=30; rank_mean=42.400; match_rank=45 a 0 0 0 0 0 1.0 0.0 17.0 19.0 6.0 0.0 c 0 0 0 0 0 1.0 0.0 0.0 0.0 2.0 3.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 6.0 t 0 0 0 0 0 17.0 19.0 2.0 0.0 11.0 10.0

MA0179.1_shift5 (CG32532) 0.849 0.424 5.404 0.879 0.913 38 48 28 50 48 42.400 46
; oligos_7nt_mkv5_m3 versus MA0179.1 (CG32532); m=34/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 42.4; -----yTAATT ; cor=0.849; Ncor=0.424; logoDP=5.404; NsEucl=0.879; NSW=0.913; rcor=38; rNcor=48; rlogoDP=28; rNsEucl=50; rNSW=48; rank_mean=42.400; match_rank=46 a 0 0 0 0 0 2.0 0.0 23.0 23.0 0.0 0.0 c 0 0 0 0 0 6.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 2.0 0.0 0.0 0.0 0.0 2.0 t 0 0 0 0 0 13.0 23.0 0.0 0.0 23.0 21.0

MA0225.1_shift5 (ftz) 0.842 0.421 5.256 0.879 0.913 41 51 36 49 47 44.800 47
; oligos_7nt_mkv5_m3 versus MA0225.1 (ftz); m=35/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 44.8; -----TTAATk ; cor=0.842; Ncor=0.421; logoDP=5.256; NsEucl=0.879; NSW=0.913; rcor=41; rNcor=51; rlogoDP=36; rNsEucl=49; rNSW=47; rank_mean=44.800; match_rank=47 a 0 0 0 0 0 1.0 1.0 18.0 18.0 0.0 0.0 c 0 0 0 0 0 2.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 9.0 t 0 0 0 0 0 15.0 17.0 0.0 0.0 18.0 9.0

MA0166.1_shift5 (Antp) 0.831 0.416 5.541 0.872 0.902 47 59 12 58 54 46.000 48
; oligos_7nt_mkv5_m3 versus MA0166.1 (Antp); m=36/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 46; -----TTAATk ; cor=0.831; Ncor=0.416; logoDP=5.541; NsEucl=0.872; NSW=0.902; rcor=47; rNcor=59; rlogoDP=12; rNsEucl=58; rNSW=54; rank_mean=46.000; match_rank=48 a 0 0 0 0 0 1.0 0.0 16.0 16.0 0.0 0.0 c 0 0 0 0 0 1.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 9.0 t 0 0 0 0 0 14.0 16.0 0.0 0.0 16.0 7.0

MA0250.1_shift5 (unc-4) 0.836 0.418 5.430 0.873 0.903 45 56 22 56 52 46.200 49
; oligos_7nt_mkv5_m3 versus MA0250.1 (unc-4); m=37/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 46.2; -----tTAATT ; cor=0.836; Ncor=0.418; logoDP=5.430; NsEucl=0.873; NSW=0.903; rcor=45; rNcor=56; rlogoDP=22; rNsEucl=56; rNSW=52; rank_mean=46.200; match_rank=49 a 0 0 0 0 0 1.0 0.0 21.0 21.0 0.0 1.0 c 0 0 0 0 0 5.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 2.0 0.0 0.0 0.0 0.0 0.0 t 0 0 0 0 0 13.0 21.0 0.0 0.0 21.0 20.0

MA0215.1_shift5 (btn) 0.832 0.416 5.035 0.881 0.916 46 58 44 44 41 46.600 50
; oligos_7nt_mkv5_m3 versus MA0215.1 (btn); m=38/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 46.6; -----tTAATk ; cor=0.832; Ncor=0.416; logoDP=5.035; NsEucl=0.881; NSW=0.916; rcor=46; rNcor=58; rlogoDP=44; rNsEucl=44; rNSW=41; rank_mean=46.600; match_rank=50 a 0 0 0 0 0 5.0 0.0 22.0 23.0 0.0 0.0 c 0 0 0 0 0 1.0 0.0 0.0 0.0 1.0 0.0 g 0 0 0 0 0 4.0 0.0 1.0 0.0 0.0 15.0 t 0 0 0 0 0 13.0 23.0 0.0 0.0 22.0 8.0

MA1838.2_rc_shift5 (Elba2_rc) 0.843 0.421 1.752 0.886 0.922 40 50 68 40 35 46.600 51
; oligos_7nt_mkv5_m3 versus MA1838.2_rc (Elba2_rc); m=39/49; ncol2=7; w=0; offset=5; strand=R; shift=5; score= 46.6; -----CTAATT ; cor=0.843; Ncor=0.421; logoDP=1.752; NsEucl=0.886; NSW=0.922; rcor=40; rNcor=50; rlogoDP=68; rNsEucl=40; rNSW=35; rank_mean=46.600; match_rank=51 a 0 0 0 0 0 128.0 30.0 3307.0 3937.0 186.0 176.0 c 0 0 0 0 0 4148.0 234.0 99.0 131.0 171.0 127.0 g 0 0 0 0 0 114.0 133.0 298.0 131.0 115.0 150.0 t 0 0 0 0 0 40.0 4033.0 726.0 231.0 3958.0 3977.0

MA1702.2_shift0 (Pdp1) 0.704 0.512 5.479 0.859 0.840 71 11 16 67 70 47.000
; oligos_7nt_mkv5_m3 versus MA1702.2 (Pdp1); m=40/49; ncol2=8; w=0; offset=0; strand=D; shift=0; score= 47; TTATGYAA--- ; cor=0.704; Ncor=0.512; logoDP=5.479; NsEucl=0.859; NSW=0.840; rcor=71; rNcor=11; rlogoDP=16; rNsEucl=67; rNSW=70; rank_mean=47.000; match_rank= a 126.0 110.0 4468.0 109.0 331.0 154.0 4598.0 4606.0 0 0 0 c 46.0 49.0 35.0 340.0 76.0 3282.0 88.0 60.0 0 0 0 g 64.0 119.0 218.0 74.0 4221.0 79.0 71.0 68.0 0 0 0 t 4580.0 4538.0 95.0 4293.0 188.0 1301.0 59.0 82.0 0 0 0

MA0192.1_shift5 (Hmx) 0.827 0.414 5.507 0.871 0.900 49 61 14 59 55 47.600
; oligos_7nt_mkv5_m3 versus MA0192.1 (Hmx); m=41/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 47.6; -----TTAATT ; cor=0.827; Ncor=0.414; logoDP=5.507; NsEucl=0.871; NSW=0.900; rcor=49; rNcor=61; rlogoDP=14; rNsEucl=59; rNSW=55; rank_mean=47.600; match_rank= a 0 0 0 0 0 1.0 0.0 20.0 20.0 1.0 0.0 c 0 0 0 0 0 3.0 0.0 0.0 0.0 0.0 3.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 t 0 0 0 0 0 16.0 20.0 0.0 0.0 19.0 17.0

MA2320.1_shift3 (Sox100B) 0.726 0.528 5.256 0.867 0.858 65 10 37 62 66 48.000
; oligos_7nt_mkv5_m3 versus MA2320.1 (Sox100B); m=42/49; ncol2=8; w=0; offset=3; strand=D; shift=3; score= 48; ---TGTTAACA ; cor=0.726; Ncor=0.528; logoDP=5.256; NsEucl=0.867; NSW=0.858; rcor=65; rNcor=10; rlogoDP=37; rNsEucl=62; rNSW=66; rank_mean=48.000; match_rank= a 0 0 0 82.0 156.0 78.0 229.0 1868.0 2091.0 140.0 2132.0 c 0 0 0 29.0 70.0 53.0 110.0 67.0 52.0 1908.0 31.0 g 0 0 0 31.0 1908.0 52.0 67.0 110.0 53.0 70.0 29.0 t 0 0 0 2132.0 140.0 2091.0 1868.0 229.0 78.0 156.0 82.0

MA0224.1_shift5 (exex) 0.830 0.415 5.393 0.874 0.904 48 60 30 55 50 48.600
; oligos_7nt_mkv5_m3 versus MA0224.1 (exex); m=43/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 48.6; -----bTAATT ; cor=0.830; Ncor=0.415; logoDP=5.393; NsEucl=0.874; NSW=0.904; rcor=48; rNcor=60; rlogoDP=30; rNsEucl=55; rNSW=50; rank_mean=48.600; match_rank= a 0 0 0 0 0 0.0 0.0 23.0 23.0 0.0 1.0 c 0 0 0 0 0 7.0 0.0 0.0 0.0 0.0 1.0 g 0 0 0 0 0 10.0 0.0 0.0 0.0 0.0 0.0 t 0 0 0 0 0 6.0 23.0 0.0 0.0 23.0 21.0

MA0229.1_shift4 (inv) 0.733 0.428 5.628 0.857 0.857 63 43 10 68 67 50.200
; oligos_7nt_mkv5_m3 versus MA0229.1 (inv); m=44/49; ncol2=8; w=0; offset=4; strand=D; shift=4; score= 50.2; ----wyTAATT ; cor=0.733; Ncor=0.428; logoDP=5.628; NsEucl=0.857; NSW=0.857; rcor=63; rNcor=43; rlogoDP=10; rNsEucl=68; rNSW=67; rank_mean=50.200; match_rank= a 0 0 0 0 4.0 1.0 0.0 16.0 16.0 0.0 0.0 c 0 0 0 0 0.0 9.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 3.0 0.0 0.0 0.0 0.0 0.0 0.0 t 0 0 0 0 9.0 6.0 16.0 0.0 0.0 16.0 16.0

MA0226.1_shift5 (hbn) 0.804 0.402 5.407 0.860 0.883 56 69 27 65 60 55.400
; oligos_7nt_mkv5_m3 versus MA0226.1 (hbn); m=45/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 55.4; -----tTAATT ; cor=0.804; Ncor=0.402; logoDP=5.407; NsEucl=0.860; NSW=0.883; rcor=56; rNcor=69; rlogoDP=27; rNsEucl=65; rNSW=60; rank_mean=55.400; match_rank= a 0 0 0 0 0 2.0 0.0 17.0 17.0 0.0 0.0 c 0 0 0 0 0 2.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 2.0 0.0 0.0 0.0 0.0 0.0 t 0 0 0 0 0 11.0 17.0 0.0 0.0 17.0 17.0

MA1837.2_rc_shift5 (Elba1_rc) 0.822 0.411 1.903 0.878 0.910 52 65 67 52 49 57.000
; oligos_7nt_mkv5_m3 versus MA1837.2_rc (Elba1_rc); m=46/49; ncol2=7; w=0; offset=5; strand=R; shift=5; score= 57; -----CTaATT ; cor=0.822; Ncor=0.411; logoDP=1.903; NsEucl=0.878; NSW=0.910; rcor=52; rNcor=65; rlogoDP=67; rNsEucl=52; rNSW=49; rank_mean=57.000; match_rank= a 0 0 0 0 0 76.0 18.0 2703.0 3697.0 121.0 131.0 c 0 0 0 0 0 3882.0 182.0 66.0 74.0 127.0 101.0 g 0 0 0 0 0 68.0 112.0 304.0 106.0 86.0 96.0 t 0 0 0 0 0 25.0 3739.0 978.0 174.0 3717.0 3723.0

MA0444.1_shift5 (CG34031) 0.807 0.404 4.878 0.869 0.897 55 68 49 60 56 57.600
; oligos_7nt_mkv5_m3 versus MA0444.1 (CG34031); m=47/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 57.6; -----TTAATW ; cor=0.807; Ncor=0.404; logoDP=4.878; NsEucl=0.869; NSW=0.897; rcor=55; rNcor=68; rlogoDP=49; rNsEucl=60; rNSW=56; rank_mean=57.600; match_rank= a 0 0 0 0 0 0.0 0.0 22.0 25.0 2.0 7.0 c 0 0 0 0 0 1.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 1.0 0.0 0.0 0.0 0.0 1.0 t 0 0 0 0 0 23.0 25.0 3.0 0.0 23.0 17.0

MA0178.1_shift5 (CG32105) 0.814 0.407 4.414 0.873 0.903 53 67 59 57 53 57.800
; oligos_7nt_mkv5_m3 versus MA0178.1 (CG32105); m=48/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 57.8; -----TTAATT ; cor=0.814; Ncor=0.407; logoDP=4.414; NsEucl=0.873; NSW=0.903; rcor=53; rNcor=67; rlogoDP=59; rNsEucl=57; rNSW=53; rank_mean=57.800; match_rank= a 0 0 0 0 0 2.0 2.0 17.0 19.0 0.0 0.0 c 0 0 0 0 0 4.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 t 0 0 0 0 0 13.0 17.0 2.0 0.0 18.0 18.0

MA0240.1_shift5 (repo) 0.801 0.401 4.974 0.861 0.885 58 70 47 63 59 59.400
; oligos_7nt_mkv5_m3 versus MA0240.1 (repo); m=49/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 59.4; -----tTAATT ; cor=0.801; Ncor=0.401; logoDP=4.974; NsEucl=0.861; NSW=0.885; rcor=58; rNcor=70; rlogoDP=47; rNsEucl=63; rNSW=59; rank_mean=59.400; match_rank= a 0 0 0 0 0 1.0 1.0 27.0 28.0 0.0 0.0 c 0 0 0 0 0 4.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 4.0 0.0 0.0 0.0 0.0 0.0 t 0 0 0 0 0 19.0 27.0 1.0 0.0 28.0 28.0

Matrix name	cor	Ncor	logoDP	NsEucl	NSW	rcor	rNcor	rlogoDP	rNsEucl	rNSW	rank_mean	match_rank	Aligned matrices
oligos_7nt_mkv5_m3_shift0 (oligos_7nt_mkv5_m3)													; oligos_7nt_mkv5_m3; m=0 (reference); ncol1=11; shift=0; ncol=11; wtATGyTAAtk ; Alignment reference a 95 61 246 0 0 1 19 245 246 53 60 c 25 46 0 2 0 166 0 0 0 35 32 g 33 47 0 0 245 0 1 0 0 31 75 t 93 92 0 244 1 79 226 1 0 127 79
MA0228.1_shift5 (ind)	0.933	0.466	5.571	0.919	0.961	5	16	11	8	5	9.000	4	; oligos_7nt_mkv5_m3 versus MA0228.1 (ind); m=1/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 9; -----yTAATk ; cor=0.933; Ncor=0.466; logoDP=5.571; NsEucl=0.919; NSW=0.961; rcor=5; rNcor=16; rlogoDP=11; rNsEucl=8; rNSW=5; rank_mean=9.000; match_rank=4 a 0 0 0 0 0 0.0 0.0 21.0 21.0 0.0 0.0 c 0 0 0 0 0 12.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 1.0 8.0 t 0 0 0 0 0 9.0 21.0 0.0 0.0 20.0 13.0
MA0256.1_shift5 (zen)	0.916	0.458	5.478	0.910	0.952	7	18	17	11	9	12.400	5	; oligos_7nt_mkv5_m3 versus MA0256.1 (zen); m=2/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 12.4; -----yTAATK ; cor=0.916; Ncor=0.458; logoDP=5.478; NsEucl=0.910; NSW=0.952; rcor=7; rNcor=18; rlogoDP=17; rNsEucl=11; rNSW=9; rank_mean=12.400; match_rank=5 a 0 0 0 0 0 2.0 0.0 16.0 16.0 0.0 0.0 c 0 0 0 0 0 9.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 11.0 t 0 0 0 0 0 5.0 16.0 0.0 0.0 16.0 5.0
MA0221.1_shift5 (eve)	0.938	0.469	5.156	0.929	0.970	4	14	40	6	4	13.600	7	; oligos_7nt_mkv5_m3 versus MA0221.1 (eve); m=3/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 13.6; -----yTAATk ; cor=0.938; Ncor=0.469; logoDP=5.156; NsEucl=0.929; NSW=0.970; rcor=4; rNcor=14; rlogoDP=40; rNsEucl=6; rNSW=4; rank_mean=13.600; match_rank=7 a 0 0 0 0 0 3.0 1.0 22.0 22.0 0.0 0.0 c 0 0 0 0 0 10.0 0.0 0.0 0.0 2.0 2.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 1.0 11.0 t 0 0 0 0 0 9.0 21.0 0.0 0.0 19.0 9.0
MA0209.1_shift5 (ap)	0.915	0.458	5.214	0.912	0.953	8	19	39	10	8	16.800	8	; oligos_7nt_mkv5_m3 versus MA0209.1 (ap); m=4/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 16.8; -----yTAATK ; cor=0.915; Ncor=0.458; logoDP=5.214; NsEucl=0.912; NSW=0.953; rcor=8; rNcor=19; rlogoDP=39; rNsEucl=10; rNSW=8; rank_mean=16.800; match_rank=8 a 0 0 0 0 0 2.0 1.0 19.0 19.0 0.0 0.0 c 0 0 0 0 0 10.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 6.0 t 0 0 0 0 0 7.0 18.0 0.0 0.0 19.0 13.0
MA0238.1_shift5 (pb)	0.906	0.453	5.429	0.908	0.949	12	22	23	16	13	17.200	9	; oligos_7nt_mkv5_m3 versus MA0238.1 (pb); m=5/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 17.2; -----yTAATk ; cor=0.906; Ncor=0.453; logoDP=5.429; NsEucl=0.908; NSW=0.949; rcor=12; rNcor=22; rlogoDP=23; rNsEucl=16; rNSW=13; rank_mean=17.200; match_rank=9 a 0 0 0 0 0 4.0 0.0 24.0 24.0 0.0 0.0 c 0 0 0 0 0 9.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 11.0 t 0 0 0 0 0 11.0 24.0 0.0 0.0 24.0 13.0
MA0177.1_shift5 (CG18599)	0.906	0.453	5.388	0.908	0.949	11	21	31	15	12	18.000	10	; oligos_7nt_mkv5_m3 versus MA0177.1 (CG18599); m=6/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 18; -----yTAATk ; cor=0.906; Ncor=0.453; logoDP=5.388; NsEucl=0.908; NSW=0.949; rcor=11; rNcor=21; rlogoDP=31; rNsEucl=15; rNSW=12; rank_mean=18.000; match_rank=10 a 0 0 0 0 0 4.0 0.0 25.0 25.0 0.0 0.0 c 0 0 0 0 0 10.0 0.0 0.0 0.0 0.0 1.0 g 0 0 0 0 0 1.0 0.0 0.0 0.0 0.0 8.0 t 0 0 0 0 0 10.0 25.0 0.0 0.0 25.0 16.0
MA0175.1_shift5 (lms)	0.899	0.449	5.409	0.904	0.945	13	23	26	19	15	19.200	11	; oligos_7nt_mkv5_m3 versus MA0175.1 (lms); m=7/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 19.2; -----yTAATt ; cor=0.899; Ncor=0.449; logoDP=5.409; NsEucl=0.904; NSW=0.945; rcor=13; rNcor=23; rlogoDP=26; rNsEucl=19; rNSW=15; rank_mean=19.200; match_rank=11 a 0 0 0 0 0 2.0 0.0 21.0 21.0 0.0 3.0 c 0 0 0 0 0 7.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 1.0 0.0 0.0 0.0 0.0 4.0 t 0 0 0 0 0 11.0 21.0 0.0 0.0 21.0 14.0
MA0197.3_shift1 (nub)	0.837	0.697	8.741	0.910	0.919	44	3	2	12	39	20.000	13	; oligos_7nt_mkv5_m3 versus MA0197.3 (nub); m=8/49; ncol2=11; w=0; offset=1; strand=D; shift=1; score= 20; -TATGyAAATk ; cor=0.837; Ncor=0.697; logoDP=8.741; NsEucl=0.910; NSW=0.919; rcor=44; rNcor=3; rlogoDP=2; rNsEucl=12; rNSW=39; rank_mean=20.000; match_rank=13 a 0 2.0 29.0 0.0 0.0 0.0 24.0 28.0 28.0 4.0 6.0 c 0 1.0 0.0 0.0 0.0 19.0 0.0 0.0 0.0 1.0 5.0 g 0 1.0 0.0 0.0 25.0 1.0 0.0 1.0 0.0 0.0 8.0 t 0 25.0 0.0 29.0 4.0 9.0 5.0 0.0 1.0 24.0 10.0
MA0171.1_shift5 (CG11085)	0.884	0.442	5.537	0.898	0.937	18	28	13	24	20	20.600	14	; oligos_7nt_mkv5_m3 versus MA0171.1 (CG11085); m=9/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 20.6; -----TTAATt ; cor=0.884; Ncor=0.442; logoDP=5.537; NsEucl=0.898; NSW=0.937; rcor=18; rNcor=28; rlogoDP=13; rNsEucl=24; rNSW=20; rank_mean=20.600; match_rank=14 a 0 0 0 0 0 0.0 0.0 13.0 13.0 1.0 2.0 c 0 0 0 0 0 3.0 0.0 0.0 0.0 0.0 1.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 2.0 t 0 0 0 0 0 10.0 13.0 0.0 0.0 12.0 8.0
MA0181.1_shift5 (Vsx1)	0.889	0.445	5.448	0.898	0.937	15	25	21	25	21	21.400	15	; oligos_7nt_mkv5_m3 versus MA0181.1 (Vsx1); m=10/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 21.4; -----yTAATT ; cor=0.889; Ncor=0.445; logoDP=5.448; NsEucl=0.898; NSW=0.937; rcor=15; rNcor=25; rlogoDP=21; rNsEucl=25; rNSW=21; rank_mean=21.400; match_rank=15 a 0 0 0 0 0 1.0 0.0 22.0 22.0 0.0 2.0 c 0 0 0 0 0 8.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 1.0 0.0 0.0 0.0 0.0 3.0 t 0 0 0 0 0 12.0 22.0 0.0 0.0 22.0 17.0
MA0214.1_shift5 (bsh)	0.886	0.443	5.373	0.902	0.943	17	27	32	21	17	22.800	16	; oligos_7nt_mkv5_m3 versus MA0214.1 (bsh); m=11/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 22.8; -----tTAATk ; cor=0.886; Ncor=0.443; logoDP=5.373; NsEucl=0.902; NSW=0.943; rcor=17; rNcor=27; rlogoDP=32; rNsEucl=21; rNSW=17; rank_mean=22.800; match_rank=16 a 0 0 0 0 0 1.0 0.0 16.0 16.0 0.0 0.0 c 0 0 0 0 0 3.0 0.0 0.0 0.0 1.0 3.0 g 0 0 0 0 0 2.0 0.0 0.0 0.0 0.0 6.0 t 0 0 0 0 0 10.0 16.0 0.0 0.0 15.0 7.0
MA0232.1_shift6 (lbl)	0.960	0.400	5.255	0.932	0.977	2	71	38	4	2	23.400	18	; oligos_7nt_mkv5_m3 versus MA0232.1 (lbl); m=12/49; ncol2=6; w=0; offset=6; strand=D; shift=6; score= 23.4; ------TAATk ; cor=0.960; Ncor=0.400; logoDP=5.255; NsEucl=0.932; NSW=0.977; rcor=2; rNcor=71; rlogoDP=38; rNsEucl=4; rNSW=2; rank_mean=23.400; match_rank=18 a 0 0 0 0 0 0 0.0 23.0 23.0 0.0 1.0 c 0 0 0 0 0 0 0.0 0.0 0.0 5.0 3.0 g 0 0 0 0 0 0 0.0 0.0 0.0 0.0 7.0 t 0 0 0 0 0 0 23.0 0.0 0.0 18.0 12.0
MA0241.1_shift5 (ro)	0.889	0.445	5.420	0.896	0.935	16	26	25	27	23	23.400	19	; oligos_7nt_mkv5_m3 versus MA0241.1 (ro); m=13/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 23.4; -----yTAATT ; cor=0.889; Ncor=0.445; logoDP=5.420; NsEucl=0.896; NSW=0.935; rcor=16; rNcor=26; rlogoDP=25; rNsEucl=27; rNSW=23; rank_mean=23.400; match_rank=19 a 0 0 0 0 0 1.0 0.0 23.0 23.0 0.0 0.0 c 0 0 0 0 0 12.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 3.0 0.0 0.0 0.0 0.0 3.0 t 0 0 0 0 0 7.0 23.0 0.0 0.0 23.0 20.0
MA0219.1_shift5 (ems)	0.890	0.445	4.121	0.909	0.950	14	24	60	14	11	24.600	20	; oligos_7nt_mkv5_m3 versus MA0219.1 (ems); m=14/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 24.6; -----yTAATk ; cor=0.890; Ncor=0.445; logoDP=4.121; NsEucl=0.909; NSW=0.950; rcor=14; rNcor=24; rlogoDP=60; rNsEucl=14; rNSW=11; rank_mean=24.600; match_rank=20 a 0 0 0 0 0 3.0 3.0 19.0 19.0 0.0 0.0 c 0 0 0 0 0 7.0 0.0 0.0 0.0 0.0 1.0 g 0 0 0 0 0 1.0 0.0 0.0 1.0 0.0 10.0 t 0 0 0 0 0 9.0 17.0 1.0 0.0 20.0 9.0
MA0168.1_shift5 (B-H1)	0.875	0.437	5.354	0.901	0.941	24	32	34	22	18	26.000	21	; oligos_7nt_mkv5_m3 versus MA0168.1 (B-H1); m=15/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 26; -----tTAAwy ; cor=0.875; Ncor=0.437; logoDP=5.354; NsEucl=0.901; NSW=0.941; rcor=24; rNcor=32; rlogoDP=34; rNsEucl=22; rNSW=18; rank_mean=26.000; match_rank=21 a 0 0 0 0 0 4.0 0.0 21.0 21.0 8.0 1.0 c 0 0 0 0 0 4.0 0.0 0.0 0.0 0.0 7.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 t 0 0 0 0 0 13.0 21.0 0.0 0.0 13.0 13.0
MA0196.1_shift5 (NK7.1)	0.881	0.441	4.963	0.904	0.945	20	29	48	20	16	26.600	22	; oligos_7nt_mkv5_m3 versus MA0196.1 (NK7.1); m=16/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 26.6; -----TTAATt ; cor=0.881; Ncor=0.441; logoDP=4.963; NsEucl=0.904; NSW=0.945; rcor=20; rNcor=29; rlogoDP=48; rNsEucl=20; rNSW=16; rank_mean=26.600; match_rank=22 a 0 0 0 0 0 5.0 0.0 33.0 35.0 4.0 6.0 c 0 0 0 0 0 5.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 1.0 0.0 2.0 0.0 5.0 7.0 t 0 0 0 0 0 24.0 35.0 0.0 0.0 26.0 22.0
MA0203.1_shift5 (Scr)	0.876	0.438	5.455	0.893	0.931	23	31	19	33	28	26.800	23	; oligos_7nt_mkv5_m3 versus MA0203.1 (Scr); m=17/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 26.8; -----yTAATK ; cor=0.876; Ncor=0.438; logoDP=5.455; NsEucl=0.893; NSW=0.931; rcor=23; rNcor=31; rlogoDP=19; rNsEucl=33; rNSW=28; rank_mean=26.800; match_rank=23 a 0 0 0 0 0 3.0 0.0 25.0 25.0 0.0 0.0 c 0 0 0 0 0 7.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 18.0 t 0 0 0 0 0 15.0 25.0 0.0 0.0 25.0 7.0
MA0230.1_shift5 (lab)	0.871	0.436	5.482	0.891	0.929	28	35	15	34	29	28.200	24	; oligos_7nt_mkv5_m3 versus MA0230.1 (lab); m=18/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 28.2; -----TTAATk ; cor=0.871; Ncor=0.436; logoDP=5.482; NsEucl=0.891; NSW=0.929; rcor=28; rNcor=35; rlogoDP=15; rNsEucl=34; rNSW=29; rank_mean=28.200; match_rank=24 a 0 0 0 0 0 1.0 0.0 16.0 16.0 1.0 0.0 c 0 0 0 0 0 3.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 6.0 t 0 0 0 0 0 12.0 16.0 0.0 0.0 15.0 10.0
MA0236.1_shift5 (otp)	0.877	0.438	5.152	0.895	0.934	22	30	41	29	24	29.200	26	; oligos_7nt_mkv5_m3 versus MA0236.1 (otp); m=19/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 29.2; -----yTAATT ; cor=0.877; Ncor=0.438; logoDP=5.152; NsEucl=0.895; NSW=0.934; rcor=22; rNcor=30; rlogoDP=41; rNsEucl=29; rNSW=24; rank_mean=29.200; match_rank=26 a 0 0 0 0 0 1.0 0.0 20.0 20.0 0.0 0.0 c 0 0 0 0 0 6.0 1.0 0.0 0.0 0.0 1.0 g 0 0 0 0 0 2.0 0.0 0.0 0.0 0.0 4.0 t 0 0 0 0 0 11.0 19.0 0.0 0.0 20.0 15.0
MA0248.1_shift5 (tup)	0.873	0.437	5.032	0.900	0.940	27	34	45	23	19	29.600	27	; oligos_7nt_mkv5_m3 versus MA0248.1 (tup); m=20/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 29.6; -----wTAATk ; cor=0.873; Ncor=0.437; logoDP=5.032; NsEucl=0.900; NSW=0.940; rcor=27; rNcor=34; rlogoDP=45; rNsEucl=23; rNSW=19; rank_mean=29.600; match_rank=27 a 0 0 0 0 0 4.0 1.0 16.0 16.0 0.0 1.0 c 0 0 0 0 0 2.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 1.0 0.0 0.0 0.0 2.0 7.0 t 0 0 0 0 0 9.0 15.0 0.0 0.0 14.0 8.0
MA0173.1_rc_shift2 (CG11617_rc)	0.882	0.561	3.920	0.895	0.922	19	5	63	31	33	30.200	29	; oligos_7nt_mkv5_m3 versus MA0173.1_rc (CG11617_rc); m=21/49; ncol2=7; w=0; offset=2; strand=R; shift=2; score= 30.2; --ATGTtAA-- ; cor=0.882; Ncor=0.561; logoDP=3.920; NsEucl=0.895; NSW=0.922; rcor=19; rNcor=5; rlogoDP=63; rNsEucl=31; rNSW=33; rank_mean=30.200; match_rank=29 a 0 0 17.0 0.0 0.0 0.0 4.0 17.0 16.0 0 0 c 0 0 0.0 0.0 0.0 0.0 3.0 0.0 0.0 0 0 g 0 0 0.0 0.0 17.0 0.0 0.0 0.0 0.0 0 0 t 0 0 0.0 17.0 0.0 17.0 10.0 0.0 1.0 0 0
MA0245.1_shift5 (slou)	0.874	0.437	4.828	0.897	0.937	25	33	53	26	22	31.800	31	; oligos_7nt_mkv5_m3 versus MA0245.1 (slou); m=22/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 31.8; -----tTAATt ; cor=0.874; Ncor=0.437; logoDP=4.828; NsEucl=0.897; NSW=0.937; rcor=25; rNcor=33; rlogoDP=53; rNsEucl=26; rNSW=22; rank_mean=31.800; match_rank=31 a 0 0 0 0 0 3.0 0.0 22.0 21.0 0.0 2.0 c 0 0 0 0 0 5.0 1.0 0.0 0.0 0.0 1.0 g 0 0 0 0 0 1.0 0.0 0.0 1.0 0.0 5.0 t 0 0 0 0 0 13.0 21.0 0.0 0.0 22.0 14.0
MA0457.2_shift5 (PHDP)	0.859	0.468	5.016	0.887	0.923	34	15	46	37	31	32.600	32	; oligos_7nt_mkv5_m3 versus MA0457.2 (PHDP); m=23/49; ncol2=6; w=0; offset=5; strand=D; shift=5; score= 32.6; -----yTAATT ; cor=0.859; Ncor=0.468; logoDP=5.016; NsEucl=0.887; NSW=0.923; rcor=34; rNcor=15; rlogoDP=46; rNsEucl=37; rNSW=31; rank_mean=32.600; match_rank=32 a 0 0 0 0 0 4.0 0.0 16.0 17.0 0.0 1.0 c 0 0 0 0 0 6.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 1.0 t 0 0 0 0 0 7.0 17.0 1.0 0.0 17.0 15.0
MA0169.1_shift5 (B-H2)	0.861	0.431	5.320	0.894	0.933	32	41	35	32	26	33.200	33	; oligos_7nt_mkv5_m3 versus MA0169.1 (B-H2); m=24/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 33.2; -----wTAATT ; cor=0.861; Ncor=0.431; logoDP=5.320; NsEucl=0.894; NSW=0.933; rcor=32; rNcor=41; rlogoDP=35; rNsEucl=32; rNSW=26; rank_mean=33.200; match_rank=33 a 0 0 0 0 0 6.0 0.0 21.0 21.0 5.0 3.0 c 0 0 0 0 0 2.0 0.0 0.0 0.0 0.0 1.0 g 0 0 0 0 0 1.0 0.0 0.0 0.0 0.0 2.0 t 0 0 0 0 0 12.0 21.0 0.0 0.0 16.0 15.0
MA0202.1_shift5 (Rx)	0.862	0.431	5.475	0.881	0.915	31	40	18	45	42	35.200	34	; oligos_7nt_mkv5_m3 versus MA0202.1 (Rx); m=25/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 35.2; -----yTAATT ; cor=0.862; Ncor=0.431; logoDP=5.475; NsEucl=0.881; NSW=0.915; rcor=31; rNcor=40; rlogoDP=18; rNsEucl=45; rNSW=42; rank_mean=35.200; match_rank=34 a 0 0 0 0 0 3.0 0.0 27.0 27.0 0.0 0.0 c 0 0 0 0 0 13.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 t 0 0 0 0 0 11.0 27.0 0.0 0.0 27.0 27.0
MA0167.1_shift5 (Awh)	0.869	0.435	4.477	0.895	0.934	29	36	57	30	25	35.400	35	; oligos_7nt_mkv5_m3 versus MA0167.1 (Awh); m=26/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 35.4; -----yTAATT ; cor=0.869; Ncor=0.435; logoDP=4.477; NsEucl=0.895; NSW=0.934; rcor=29; rNcor=36; rlogoDP=57; rNsEucl=30; rNSW=25; rank_mean=35.400; match_rank=35 a 0 0 0 0 0 3.0 1.0 33.0 40.0 0.0 0.0 c 0 0 0 0 0 16.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 0.0 0.0 7.0 0.0 1.0 8.0 t 0 0 0 0 0 21.0 39.0 0.0 0.0 39.0 32.0
MA0220.1_shift5 (en)	0.863	0.432	5.397	0.885	0.921	30	39	29	42	37	35.400	37	; oligos_7nt_mkv5_m3 versus MA0220.1 (en); m=27/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 35.4; -----yTAATT ; cor=0.863; Ncor=0.432; logoDP=5.397; NsEucl=0.885; NSW=0.921; rcor=30; rNcor=39; rlogoDP=29; rNsEucl=42; rNSW=37; rank_mean=35.400; match_rank=37 a 0 0 0 0 0 2.0 0.0 23.0 23.0 0.0 0.0 c 0 0 0 0 0 8.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 2.0 0.0 0.0 0.0 0.0 2.0 t 0 0 0 0 0 11.0 23.0 0.0 0.0 23.0 21.0
MA0191.1_shift5 (HGTX)	0.851	0.425	5.360	0.886	0.922	35	44	33	39	34	37.000	38	; oligos_7nt_mkv5_m3 versus MA0191.1 (HGTX); m=28/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 37; -----tTAATk ; cor=0.851; Ncor=0.425; logoDP=5.360; NsEucl=0.886; NSW=0.922; rcor=35; rNcor=44; rlogoDP=33; rNsEucl=39; rNSW=34; rank_mean=37.000; match_rank=38 a 0 0 0 0 0 4.0 0.0 20.0 20.0 0.0 1.0 c 0 0 0 0 0 2.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 3.0 0.0 0.0 0.0 0.0 6.0 t 0 0 0 0 0 11.0 20.0 0.0 0.0 20.0 13.0
MA0198.1_shift5 (OdsH)	0.860	0.430	5.451	0.881	0.915	33	42	20	47	45	37.400	39	; oligos_7nt_mkv5_m3 versus MA0198.1 (OdsH); m=29/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 37.4; -----yTAATT ; cor=0.860; Ncor=0.430; logoDP=5.451; NsEucl=0.881; NSW=0.915; rcor=33; rNcor=42; rlogoDP=20; rNsEucl=47; rNSW=45; rank_mean=37.400; match_rank=39 a 0 0 0 0 0 0.0 0.0 22.0 22.0 0.0 0.0 c 0 0 0 0 0 11.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 4.0 0.0 0.0 0.0 0.0 0.0 t 0 0 0 0 0 7.0 22.0 0.0 0.0 22.0 22.0
MA0251.1_shift5 (unpg)	0.850	0.425	5.139	0.883	0.917	36	45	42	43	40	41.200	42	; oligos_7nt_mkv5_m3 versus MA0251.1 (unpg); m=30/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 41.2; -----yTAATT ; cor=0.850; Ncor=0.425; logoDP=5.139; NsEucl=0.883; NSW=0.917; rcor=36; rNcor=45; rlogoDP=42; rNsEucl=43; rNSW=40; rank_mean=41.200; match_rank=42 a 0 0 0 0 0 1.0 1.0 21.0 21.0 0.0 0.0 c 0 0 0 0 0 6.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 4.0 0.0 0.0 0.0 0.0 2.0 t 0 0 0 0 0 10.0 20.0 0.0 0.0 21.0 19.0
MA0186.1_shift5 (Dfd)	0.845	0.423	5.425	0.880	0.913	39	49	24	48	46	41.200	43	; oligos_7nt_mkv5_m3 versus MA0186.1 (Dfd); m=31/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 41.2; -----tTAATG ; cor=0.845; Ncor=0.423; logoDP=5.425; NsEucl=0.880; NSW=0.913; rcor=39; rNcor=49; rlogoDP=24; rNsEucl=48; rNSW=46; rank_mean=41.200; match_rank=43 a 0 0 0 0 0 1.0 0.0 24.0 24.0 0.0 1.0 c 0 0 0 0 0 4.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 3.0 0.0 0.0 0.0 0.0 19.0 t 0 0 0 0 0 16.0 24.0 0.0 0.0 24.0 4.0
MA0206.1_shift5 (abd-A)	0.849	0.425	4.867	0.885	0.921	37	46	50	41	36	42.000	44	; oligos_7nt_mkv5_m3 versus MA0206.1 (abd-A); m=32/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 42; -----TTAATk ; cor=0.849; Ncor=0.425; logoDP=4.867; NsEucl=0.885; NSW=0.921; rcor=37; rNcor=46; rlogoDP=50; rNsEucl=41; rNSW=36; rank_mean=42.000; match_rank=44 a 0 0 0 0 0 1.0 0.0 16.0 18.0 1.0 0.0 c 0 0 0 0 0 3.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 6.0 t 0 0 0 0 0 14.0 18.0 2.0 0.0 17.0 12.0
MA0170.1_shift5 (C15)	0.841	0.421	4.849	0.889	0.926	42	52	52	36	30	42.400	45	; oligos_7nt_mkv5_m3 versus MA0170.1 (C15); m=33/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 42.4; -----TTAAwk ; cor=0.841; Ncor=0.421; logoDP=4.849; NsEucl=0.889; NSW=0.926; rcor=42; rNcor=52; rlogoDP=52; rNsEucl=36; rNSW=30; rank_mean=42.400; match_rank=45 a 0 0 0 0 0 1.0 0.0 17.0 19.0 6.0 0.0 c 0 0 0 0 0 1.0 0.0 0.0 0.0 2.0 3.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 6.0 t 0 0 0 0 0 17.0 19.0 2.0 0.0 11.0 10.0
MA0179.1_shift5 (CG32532)	0.849	0.424	5.404	0.879	0.913	38	48	28	50	48	42.400	46	; oligos_7nt_mkv5_m3 versus MA0179.1 (CG32532); m=34/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 42.4; -----yTAATT ; cor=0.849; Ncor=0.424; logoDP=5.404; NsEucl=0.879; NSW=0.913; rcor=38; rNcor=48; rlogoDP=28; rNsEucl=50; rNSW=48; rank_mean=42.400; match_rank=46 a 0 0 0 0 0 2.0 0.0 23.0 23.0 0.0 0.0 c 0 0 0 0 0 6.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 2.0 0.0 0.0 0.0 0.0 2.0 t 0 0 0 0 0 13.0 23.0 0.0 0.0 23.0 21.0
MA0225.1_shift5 (ftz)	0.842	0.421	5.256	0.879	0.913	41	51	36	49	47	44.800	47	; oligos_7nt_mkv5_m3 versus MA0225.1 (ftz); m=35/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 44.8; -----TTAATk ; cor=0.842; Ncor=0.421; logoDP=5.256; NsEucl=0.879; NSW=0.913; rcor=41; rNcor=51; rlogoDP=36; rNsEucl=49; rNSW=47; rank_mean=44.800; match_rank=47 a 0 0 0 0 0 1.0 1.0 18.0 18.0 0.0 0.0 c 0 0 0 0 0 2.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 9.0 t 0 0 0 0 0 15.0 17.0 0.0 0.0 18.0 9.0
MA0166.1_shift5 (Antp)	0.831	0.416	5.541	0.872	0.902	47	59	12	58	54	46.000	48	; oligos_7nt_mkv5_m3 versus MA0166.1 (Antp); m=36/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 46; -----TTAATk ; cor=0.831; Ncor=0.416; logoDP=5.541; NsEucl=0.872; NSW=0.902; rcor=47; rNcor=59; rlogoDP=12; rNsEucl=58; rNSW=54; rank_mean=46.000; match_rank=48 a 0 0 0 0 0 1.0 0.0 16.0 16.0 0.0 0.0 c 0 0 0 0 0 1.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 9.0 t 0 0 0 0 0 14.0 16.0 0.0 0.0 16.0 7.0
MA0250.1_shift5 (unc-4)	0.836	0.418	5.430	0.873	0.903	45	56	22	56	52	46.200	49	; oligos_7nt_mkv5_m3 versus MA0250.1 (unc-4); m=37/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 46.2; -----tTAATT ; cor=0.836; Ncor=0.418; logoDP=5.430; NsEucl=0.873; NSW=0.903; rcor=45; rNcor=56; rlogoDP=22; rNsEucl=56; rNSW=52; rank_mean=46.200; match_rank=49 a 0 0 0 0 0 1.0 0.0 21.0 21.0 0.0 1.0 c 0 0 0 0 0 5.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 2.0 0.0 0.0 0.0 0.0 0.0 t 0 0 0 0 0 13.0 21.0 0.0 0.0 21.0 20.0
MA0215.1_shift5 (btn)	0.832	0.416	5.035	0.881	0.916	46	58	44	44	41	46.600	50	; oligos_7nt_mkv5_m3 versus MA0215.1 (btn); m=38/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 46.6; -----tTAATk ; cor=0.832; Ncor=0.416; logoDP=5.035; NsEucl=0.881; NSW=0.916; rcor=46; rNcor=58; rlogoDP=44; rNsEucl=44; rNSW=41; rank_mean=46.600; match_rank=50 a 0 0 0 0 0 5.0 0.0 22.0 23.0 0.0 0.0 c 0 0 0 0 0 1.0 0.0 0.0 0.0 1.0 0.0 g 0 0 0 0 0 4.0 0.0 1.0 0.0 0.0 15.0 t 0 0 0 0 0 13.0 23.0 0.0 0.0 22.0 8.0
MA1838.2_rc_shift5 (Elba2_rc)	0.843	0.421	1.752	0.886	0.922	40	50	68	40	35	46.600	51	; oligos_7nt_mkv5_m3 versus MA1838.2_rc (Elba2_rc); m=39/49; ncol2=7; w=0; offset=5; strand=R; shift=5; score= 46.6; -----CTAATT ; cor=0.843; Ncor=0.421; logoDP=1.752; NsEucl=0.886; NSW=0.922; rcor=40; rNcor=50; rlogoDP=68; rNsEucl=40; rNSW=35; rank_mean=46.600; match_rank=51 a 0 0 0 0 0 128.0 30.0 3307.0 3937.0 186.0 176.0 c 0 0 0 0 0 4148.0 234.0 99.0 131.0 171.0 127.0 g 0 0 0 0 0 114.0 133.0 298.0 131.0 115.0 150.0 t 0 0 0 0 0 40.0 4033.0 726.0 231.0 3958.0 3977.0
MA1702.2_shift0 (Pdp1)	0.704	0.512	5.479	0.859	0.840	71	11	16	67	70	47.000		; oligos_7nt_mkv5_m3 versus MA1702.2 (Pdp1); m=40/49; ncol2=8; w=0; offset=0; strand=D; shift=0; score= 47; TTATGYAA--- ; cor=0.704; Ncor=0.512; logoDP=5.479; NsEucl=0.859; NSW=0.840; rcor=71; rNcor=11; rlogoDP=16; rNsEucl=67; rNSW=70; rank_mean=47.000; match_rank= a 126.0 110.0 4468.0 109.0 331.0 154.0 4598.0 4606.0 0 0 0 c 46.0 49.0 35.0 340.0 76.0 3282.0 88.0 60.0 0 0 0 g 64.0 119.0 218.0 74.0 4221.0 79.0 71.0 68.0 0 0 0 t 4580.0 4538.0 95.0 4293.0 188.0 1301.0 59.0 82.0 0 0 0
MA0192.1_shift5 (Hmx)	0.827	0.414	5.507	0.871	0.900	49	61	14	59	55	47.600		; oligos_7nt_mkv5_m3 versus MA0192.1 (Hmx); m=41/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 47.6; -----TTAATT ; cor=0.827; Ncor=0.414; logoDP=5.507; NsEucl=0.871; NSW=0.900; rcor=49; rNcor=61; rlogoDP=14; rNsEucl=59; rNSW=55; rank_mean=47.600; match_rank= a 0 0 0 0 0 1.0 0.0 20.0 20.0 1.0 0.0 c 0 0 0 0 0 3.0 0.0 0.0 0.0 0.0 3.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 0.0 0.0 t 0 0 0 0 0 16.0 20.0 0.0 0.0 19.0 17.0
MA2320.1_shift3 (Sox100B)	0.726	0.528	5.256	0.867	0.858	65	10	37	62	66	48.000		; oligos_7nt_mkv5_m3 versus MA2320.1 (Sox100B); m=42/49; ncol2=8; w=0; offset=3; strand=D; shift=3; score= 48; ---TGTTAACA ; cor=0.726; Ncor=0.528; logoDP=5.256; NsEucl=0.867; NSW=0.858; rcor=65; rNcor=10; rlogoDP=37; rNsEucl=62; rNSW=66; rank_mean=48.000; match_rank= a 0 0 0 82.0 156.0 78.0 229.0 1868.0 2091.0 140.0 2132.0 c 0 0 0 29.0 70.0 53.0 110.0 67.0 52.0 1908.0 31.0 g 0 0 0 31.0 1908.0 52.0 67.0 110.0 53.0 70.0 29.0 t 0 0 0 2132.0 140.0 2091.0 1868.0 229.0 78.0 156.0 82.0
MA0224.1_shift5 (exex)	0.830	0.415	5.393	0.874	0.904	48	60	30	55	50	48.600		; oligos_7nt_mkv5_m3 versus MA0224.1 (exex); m=43/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 48.6; -----bTAATT ; cor=0.830; Ncor=0.415; logoDP=5.393; NsEucl=0.874; NSW=0.904; rcor=48; rNcor=60; rlogoDP=30; rNsEucl=55; rNSW=50; rank_mean=48.600; match_rank= a 0 0 0 0 0 0.0 0.0 23.0 23.0 0.0 1.0 c 0 0 0 0 0 7.0 0.0 0.0 0.0 0.0 1.0 g 0 0 0 0 0 10.0 0.0 0.0 0.0 0.0 0.0 t 0 0 0 0 0 6.0 23.0 0.0 0.0 23.0 21.0
MA0229.1_shift4 (inv)	0.733	0.428	5.628	0.857	0.857	63	43	10	68	67	50.200		; oligos_7nt_mkv5_m3 versus MA0229.1 (inv); m=44/49; ncol2=8; w=0; offset=4; strand=D; shift=4; score= 50.2; ----wyTAATT ; cor=0.733; Ncor=0.428; logoDP=5.628; NsEucl=0.857; NSW=0.857; rcor=63; rNcor=43; rlogoDP=10; rNsEucl=68; rNSW=67; rank_mean=50.200; match_rank= a 0 0 0 0 4.0 1.0 0.0 16.0 16.0 0.0 0.0 c 0 0 0 0 0.0 9.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 3.0 0.0 0.0 0.0 0.0 0.0 0.0 t 0 0 0 0 9.0 6.0 16.0 0.0 0.0 16.0 16.0
MA0226.1_shift5 (hbn)	0.804	0.402	5.407	0.860	0.883	56	69	27	65	60	55.400		; oligos_7nt_mkv5_m3 versus MA0226.1 (hbn); m=45/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 55.4; -----tTAATT ; cor=0.804; Ncor=0.402; logoDP=5.407; NsEucl=0.860; NSW=0.883; rcor=56; rNcor=69; rlogoDP=27; rNsEucl=65; rNSW=60; rank_mean=55.400; match_rank= a 0 0 0 0 0 2.0 0.0 17.0 17.0 0.0 0.0 c 0 0 0 0 0 2.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 2.0 0.0 0.0 0.0 0.0 0.0 t 0 0 0 0 0 11.0 17.0 0.0 0.0 17.0 17.0
MA1837.2_rc_shift5 (Elba1_rc)	0.822	0.411	1.903	0.878	0.910	52	65	67	52	49	57.000		; oligos_7nt_mkv5_m3 versus MA1837.2_rc (Elba1_rc); m=46/49; ncol2=7; w=0; offset=5; strand=R; shift=5; score= 57; -----CTaATT ; cor=0.822; Ncor=0.411; logoDP=1.903; NsEucl=0.878; NSW=0.910; rcor=52; rNcor=65; rlogoDP=67; rNsEucl=52; rNSW=49; rank_mean=57.000; match_rank= a 0 0 0 0 0 76.0 18.0 2703.0 3697.0 121.0 131.0 c 0 0 0 0 0 3882.0 182.0 66.0 74.0 127.0 101.0 g 0 0 0 0 0 68.0 112.0 304.0 106.0 86.0 96.0 t 0 0 0 0 0 25.0 3739.0 978.0 174.0 3717.0 3723.0
MA0444.1_shift5 (CG34031)	0.807	0.404	4.878	0.869	0.897	55	68	49	60	56	57.600		; oligos_7nt_mkv5_m3 versus MA0444.1 (CG34031); m=47/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 57.6; -----TTAATW ; cor=0.807; Ncor=0.404; logoDP=4.878; NsEucl=0.869; NSW=0.897; rcor=55; rNcor=68; rlogoDP=49; rNsEucl=60; rNSW=56; rank_mean=57.600; match_rank= a 0 0 0 0 0 0.0 0.0 22.0 25.0 2.0 7.0 c 0 0 0 0 0 1.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 1.0 0.0 0.0 0.0 0.0 1.0 t 0 0 0 0 0 23.0 25.0 3.0 0.0 23.0 17.0
MA0178.1_shift5 (CG32105)	0.814	0.407	4.414	0.873	0.903	53	67	59	57	53	57.800		; oligos_7nt_mkv5_m3 versus MA0178.1 (CG32105); m=48/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 57.8; -----TTAATT ; cor=0.814; Ncor=0.407; logoDP=4.414; NsEucl=0.873; NSW=0.903; rcor=53; rNcor=67; rlogoDP=59; rNsEucl=57; rNSW=53; rank_mean=57.800; match_rank= a 0 0 0 0 0 2.0 2.0 17.0 19.0 0.0 0.0 c 0 0 0 0 0 4.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 0.0 0.0 0.0 0.0 1.0 1.0 t 0 0 0 0 0 13.0 17.0 2.0 0.0 18.0 18.0
MA0240.1_shift5 (repo)	0.801	0.401	4.974	0.861	0.885	58	70	47	63	59	59.400		; oligos_7nt_mkv5_m3 versus MA0240.1 (repo); m=49/49; ncol2=7; w=0; offset=5; strand=D; shift=5; score= 59.4; -----tTAATT ; cor=0.801; Ncor=0.401; logoDP=4.974; NsEucl=0.861; NSW=0.885; rcor=58; rNcor=70; rlogoDP=47; rNsEucl=63; rNSW=59; rank_mean=59.400; match_rank= a 0 0 0 0 0 1.0 1.0 27.0 28.0 0.0 0.0 c 0 0 0 0 0 4.0 0.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 4.0 0.0 0.0 0.0 0.0 0.0 t 0 0 0 0 0 19.0 27.0 1.0 0.0 28.0 28.0

One-to-n matrix alignment; reference matrix: positions_7nt_m2_shift0 ; 2 matrices ; sort_field=rank_mean

Matrix name Aligned logos cor Ncor logoDP NsEucl NSW rcor rNcor rlogoDP rNsEucl rNSW rank_mean match_rank Aligned matrices
positions_7nt_m2_shift0 (positions_7nt_m2)
; positions_7nt_m2; m=0 (reference); ncol1=21; shift=0; ncol=21; srTATGyGCATATGCAwATrw ; Alignment reference a 8 35 1 44 2 6 1 6 4 50 1 51 0 2 0 40 21 44 4 28 17 c 20 2 7 7 5 0 30 2 44 0 1 1 0 0 51 3 10 1 8 4 9 g 17 14 0 4 0 41 0 43 8 1 0 1 1 51 2 13 9 8 2 17 4 t 11 5 48 1 49 9 25 5 0 5 54 3 55 3 3 0 16 3 42 7 26

MA0197.3_shift10 (nub) 0.881 0.461 6.442 0.930 0.945 21 17 8 5 14 13.000 6
; positions_7nt_m2 versus MA0197.3 (nub); m=1/1; ncol2=11; w=0; offset=10; strand=D; shift=10; score= 13; ----------TATGyAAATka ; cor=0.881; Ncor=0.461; logoDP=6.442; NsEucl=0.930; NSW=0.945; rcor=21; rNcor=17; rlogoDP=8; rNsEucl=5; rNSW=14; rank_mean=13.000; match_rank=6 a 0 0 0 0 0 0 0 0 0 0 2.0 29.0 0.0 0.0 0.0 24.0 28.0 28.0 4.0 6.0 19.0 c 0 0 0 0 0 0 0 0 0 0 1.0 0.0 0.0 0.0 19.0 0.0 0.0 0.0 1.0 5.0 5.0 g 0 0 0 0 0 0 0 0 0 0 1.0 0.0 0.0 25.0 1.0 0.0 1.0 0.0 0.0 8.0 1.0 t 0 0 0 0 0 0 0 0 0 0 25.0 0.0 29.0 4.0 9.0 5.0 0.0 1.0 24.0 10.0 4.0

Matrix name	Aligned logos	cor	Ncor	logoDP	NsEucl	NSW	rcor	rNcor	rlogoDP	rNsEucl	rNSW	rank_mean	match_rank	Aligned matrices
positions_7nt_m2_shift0 (positions_7nt_m2)														; positions_7nt_m2; m=0 (reference); ncol1=21; shift=0; ncol=21; srTATGyGCATATGCAwATrw ; Alignment reference a 8 35 1 44 2 6 1 6 4 50 1 51 0 2 0 40 21 44 4 28 17 c 20 2 7 7 5 0 30 2 44 0 1 1 0 0 51 3 10 1 8 4 9 g 17 14 0 4 0 41 0 43 8 1 0 1 1 51 2 13 9 8 2 17 4 t 11 5 48 1 49 9 25 5 0 5 54 3 55 3 3 0 16 3 42 7 26
MA0197.3_shift10 (nub)		0.881	0.461	6.442	0.930	0.945	21	17	8	5	14	13.000	6	; positions_7nt_m2 versus MA0197.3 (nub); m=1/1; ncol2=11; w=0; offset=10; strand=D; shift=10; score= 13; ----------TATGyAAATka ; cor=0.881; Ncor=0.461; logoDP=6.442; NsEucl=0.930; NSW=0.945; rcor=21; rNcor=17; rlogoDP=8; rNsEucl=5; rNSW=14; rank_mean=13.000; match_rank=6 a 0 0 0 0 0 0 0 0 0 0 2.0 29.0 0.0 0.0 0.0 24.0 28.0 28.0 4.0 6.0 19.0 c 0 0 0 0 0 0 0 0 0 0 1.0 0.0 0.0 0.0 19.0 0.0 0.0 0.0 1.0 5.0 5.0 g 0 0 0 0 0 0 0 0 0 0 1.0 0.0 0.0 25.0 1.0 0.0 1.0 0.0 0.0 8.0 1.0 t 0 0 0 0 0 0 0 0 0 0 25.0 0.0 29.0 4.0 9.0 5.0 0.0 1.0 24.0 10.0 4.0

One-to-n matrix alignment; reference matrix: oligos_7nt_mkv5_m1_shift1 ; 7 matrices ; sort_field=rank_mean

Matrix name Aligned logos cor Ncor logoDP NsEucl NSW rcor rNcor rlogoDP rNsEucl rNSW rank_mean match_rank Aligned matrices
oligos_7nt_mkv5_m1_shift1 (oligos_7nt_mkv5_m1)
; oligos_7nt_mkv5_m1; m=0 (reference); ncol1=12; shift=1; ncol=13; -tgCATrACAAwr ; Alignment reference a 0 90 92 33 386 0 189 391 0 387 388 164 125 c 0 30 47 340 0 0 54 0 389 1 0 26 41 g 0 27 222 10 6 0 146 0 0 3 1 22 185 t 0 245 31 9 0 392 3 1 3 1 3 180 41

MA1702.2_rc_shift0 (Pdp1_rc) 0.924 0.498 2.410 0.924 0.959 6 13 66 7 6 19.600 12
; oligos_7nt_mkv5_m1 versus MA1702.2_rc (Pdp1_rc); m=1/6; ncol2=8; w=-1; offset=-1; strand=R; shift=0; score= 19.6; TTRCATAA----- ; cor=0.924; Ncor=0.498; logoDP=2.410; NsEucl=0.924; NSW=0.959; rcor=6; rNcor=13; rlogoDP=66; rNsEucl=7; rNSW=6; rank_mean=19.600; match_rank=12 a 82.0 59.0 1301.0 188.0 4293.0 95.0 4538.0 4580.0 0 0 0 0 0 c 68.0 71.0 79.0 4221.0 74.0 218.0 119.0 64.0 0 0 0 0 0 g 60.0 88.0 3282.0 76.0 340.0 35.0 49.0 46.0 0 0 0 0 0 t 4606.0 4598.0 154.0 331.0 109.0 4468.0 110.0 126.0 0 0 0 0 0

MA1836.2_shift7 (dsx) 0.908 0.419 4.807 0.909 0.950 10 55 54 13 10 28.400 25
; oligos_7nt_mkv5_m1 versus MA1836.2 (dsx); m=2/6; ncol2=7; w=0; offset=6; strand=D; shift=7; score= 28.4; -------ACAATG ; cor=0.908; Ncor=0.419; logoDP=4.807; NsEucl=0.909; NSW=0.950; rcor=10; rNcor=55; rlogoDP=54; rNsEucl=13; rNSW=10; rank_mean=28.400; match_rank=25 a 0 0 0 0 0 0 0 5460.0 0.0 5236.0 4573.0 736.0 330.0 c 0 0 0 0 0 0 0 97.0 5444.0 120.0 247.0 151.0 103.0 g 0 0 0 0 0 0 0 26.0 124.0 151.0 249.0 121.0 5383.0 t 0 0 0 0 0 0 0 233.0 248.0 309.0 747.0 4808.0 0.0

MA2275.1_shift5 (Sox15) 0.811 0.541 7.633 0.890 0.903 54 7 6 35 51 30.600 30
; oligos_7nt_mkv5_m1 versus MA2275.1 (Sox15); m=3/6; ncol2=8; w=0; offset=4; strand=D; shift=5; score= 30.6; -----aaACAATr ; cor=0.811; Ncor=0.541; logoDP=7.633; NsEucl=0.890; NSW=0.903; rcor=54; rNcor=7; rlogoDP=6; rNsEucl=35; rNSW=51; rank_mean=30.600; match_rank=30 a 0 0 0 0 0 571.42857142857 619.04761904762 1000.0 0.0 1000.0 1000.0 142.85714285714 285.71428571429 c 0 0 0 0 0 47.619047619048 95.238095238095 0.0 1000.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 238.09523809524 95.238095238095 0.0 0.0 0.0 0.0 0.0 666.66666666667 t 0 0 0 0 0 142.85714285714 190.47619047619 0.0 0.0 0.0 0.0 857.14285714286 47.619047619048

MA0445.1_rc_shift4 (D_rc) 0.841 0.541 1.292 0.906 0.921 43 8 70 18 38 35.400 36
; oligos_7nt_mkv5_m1 versus MA0445.1_rc (D_rc); m=4/6; ncol2=11; w=0; offset=3; strand=R; shift=4; score= 35.4; ----ArAACAAWr ; cor=0.841; Ncor=0.541; logoDP=1.292; NsEucl=0.906; NSW=0.921; rcor=43; rNcor=8; rlogoDP=70; rNsEucl=18; rNSW=38; rank_mean=35.400; match_rank=36 a 0 0 0 0 21.0 9.0 22.0 29.0 0.0 26.0 29.0 9.0 12.0 c 0 0 0 0 1.0 6.0 4.0 0.0 27.0 3.0 0.0 0.0 0.0 g 0 0 0 0 1.0 10.0 2.0 0.0 0.0 0.0 0.0 0.0 17.0 t 0 0 0 0 6.0 4.0 1.0 0.0 2.0 0.0 0.0 20.0 0.0

MA0254.1_rc_shift1 (vvl_rc) 0.825 0.412 0.591 0.886 0.923 51 64 71 38 32 51.200
; oligos_7nt_mkv5_m1 versus MA0254.1_rc (vvl_rc); m=5/6; ncol2=6; w=0; offset=0; strand=R; shift=1; score= 51.2; -TKmaTA------ ; cor=0.825; Ncor=0.412; logoDP=0.591; NsEucl=0.886; NSW=0.923; rcor=51; rNcor=64; rlogoDP=71; rNsEucl=38; rNSW=32; rank_mean=51.200; match_rank= a 0 0.0 0.0 5.0 7.0 0.0 9.0 0 0 0 0 0 0 c 0 0.0 0.0 6.0 0.0 0.0 0.0 0 0 0 0 0 0 g 0 0.0 8.0 0.0 2.0 0.0 2.0 0 0 0 0 0 0 t 0 11.0 3.0 0.0 2.0 11.0 0.0 0 0 0 0 0 0

MA2274.1_rc_shift5 (Sox14_rc) 0.774 0.413 1.535 0.878 0.880 61 63 69 53 61 61.400
; oligos_7nt_mkv5_m1 versus MA2274.1_rc (Sox14_rc); m=6/6; ncol2=11; w=0; offset=4; strand=R; shift=5; score= 61.4; -----GrACAAAG ; cor=0.774; Ncor=0.413; logoDP=1.535; NsEucl=0.878; NSW=0.880; rcor=61; rNcor=63; rlogoDP=69; rNsEucl=53; rNSW=61; rank_mean=61.400; match_rank= a 0 0 0 0 0 200.0 350.0 1000.0 0.0 1000.0 1000.0 800.0 200.0 c 0 0 0 0 0 0.0 100.0 0.0 1000.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 750.0 550.0 0.0 0.0 0.0 0.0 0.0 800.0 t 0 0 0 0 0 50.0 0.0 0.0 0.0 0.0 0.0 200.0 0.0

Matrix name	cor	Ncor	logoDP	NsEucl	NSW	rcor	rNcor	rlogoDP	rNsEucl	rNSW	rank_mean	match_rank	Aligned matrices
oligos_7nt_mkv5_m1_shift1 (oligos_7nt_mkv5_m1)													; oligos_7nt_mkv5_m1; m=0 (reference); ncol1=12; shift=1; ncol=13; -tgCATrACAAwr ; Alignment reference a 0 90 92 33 386 0 189 391 0 387 388 164 125 c 0 30 47 340 0 0 54 0 389 1 0 26 41 g 0 27 222 10 6 0 146 0 0 3 1 22 185 t 0 245 31 9 0 392 3 1 3 1 3 180 41
MA1702.2_rc_shift0 (Pdp1_rc)	0.924	0.498	2.410	0.924	0.959	6	13	66	7	6	19.600	12	; oligos_7nt_mkv5_m1 versus MA1702.2_rc (Pdp1_rc); m=1/6; ncol2=8; w=-1; offset=-1; strand=R; shift=0; score= 19.6; TTRCATAA----- ; cor=0.924; Ncor=0.498; logoDP=2.410; NsEucl=0.924; NSW=0.959; rcor=6; rNcor=13; rlogoDP=66; rNsEucl=7; rNSW=6; rank_mean=19.600; match_rank=12 a 82.0 59.0 1301.0 188.0 4293.0 95.0 4538.0 4580.0 0 0 0 0 0 c 68.0 71.0 79.0 4221.0 74.0 218.0 119.0 64.0 0 0 0 0 0 g 60.0 88.0 3282.0 76.0 340.0 35.0 49.0 46.0 0 0 0 0 0 t 4606.0 4598.0 154.0 331.0 109.0 4468.0 110.0 126.0 0 0 0 0 0
MA1836.2_shift7 (dsx)	0.908	0.419	4.807	0.909	0.950	10	55	54	13	10	28.400	25	; oligos_7nt_mkv5_m1 versus MA1836.2 (dsx); m=2/6; ncol2=7; w=0; offset=6; strand=D; shift=7; score= 28.4; -------ACAATG ; cor=0.908; Ncor=0.419; logoDP=4.807; NsEucl=0.909; NSW=0.950; rcor=10; rNcor=55; rlogoDP=54; rNsEucl=13; rNSW=10; rank_mean=28.400; match_rank=25 a 0 0 0 0 0 0 0 5460.0 0.0 5236.0 4573.0 736.0 330.0 c 0 0 0 0 0 0 0 97.0 5444.0 120.0 247.0 151.0 103.0 g 0 0 0 0 0 0 0 26.0 124.0 151.0 249.0 121.0 5383.0 t 0 0 0 0 0 0 0 233.0 248.0 309.0 747.0 4808.0 0.0
MA2275.1_shift5 (Sox15)	0.811	0.541	7.633	0.890	0.903	54	7	6	35	51	30.600	30	; oligos_7nt_mkv5_m1 versus MA2275.1 (Sox15); m=3/6; ncol2=8; w=0; offset=4; strand=D; shift=5; score= 30.6; -----aaACAATr ; cor=0.811; Ncor=0.541; logoDP=7.633; NsEucl=0.890; NSW=0.903; rcor=54; rNcor=7; rlogoDP=6; rNsEucl=35; rNSW=51; rank_mean=30.600; match_rank=30 a 0 0 0 0 0 571.42857142857 619.04761904762 1000.0 0.0 1000.0 1000.0 142.85714285714 285.71428571429 c 0 0 0 0 0 47.619047619048 95.238095238095 0.0 1000.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 238.09523809524 95.238095238095 0.0 0.0 0.0 0.0 0.0 666.66666666667 t 0 0 0 0 0 142.85714285714 190.47619047619 0.0 0.0 0.0 0.0 857.14285714286 47.619047619048
MA0445.1_rc_shift4 (D_rc)	0.841	0.541	1.292	0.906	0.921	43	8	70	18	38	35.400	36	; oligos_7nt_mkv5_m1 versus MA0445.1_rc (D_rc); m=4/6; ncol2=11; w=0; offset=3; strand=R; shift=4; score= 35.4; ----ArAACAAWr ; cor=0.841; Ncor=0.541; logoDP=1.292; NsEucl=0.906; NSW=0.921; rcor=43; rNcor=8; rlogoDP=70; rNsEucl=18; rNSW=38; rank_mean=35.400; match_rank=36 a 0 0 0 0 21.0 9.0 22.0 29.0 0.0 26.0 29.0 9.0 12.0 c 0 0 0 0 1.0 6.0 4.0 0.0 27.0 3.0 0.0 0.0 0.0 g 0 0 0 0 1.0 10.0 2.0 0.0 0.0 0.0 0.0 0.0 17.0 t 0 0 0 0 6.0 4.0 1.0 0.0 2.0 0.0 0.0 20.0 0.0
MA0254.1_rc_shift1 (vvl_rc)	0.825	0.412	0.591	0.886	0.923	51	64	71	38	32	51.200		; oligos_7nt_mkv5_m1 versus MA0254.1_rc (vvl_rc); m=5/6; ncol2=6; w=0; offset=0; strand=R; shift=1; score= 51.2; -TKmaTA------ ; cor=0.825; Ncor=0.412; logoDP=0.591; NsEucl=0.886; NSW=0.923; rcor=51; rNcor=64; rlogoDP=71; rNsEucl=38; rNSW=32; rank_mean=51.200; match_rank= a 0 0.0 0.0 5.0 7.0 0.0 9.0 0 0 0 0 0 0 c 0 0.0 0.0 6.0 0.0 0.0 0.0 0 0 0 0 0 0 g 0 0.0 8.0 0.0 2.0 0.0 2.0 0 0 0 0 0 0 t 0 11.0 3.0 0.0 2.0 11.0 0.0 0 0 0 0 0 0
MA2274.1_rc_shift5 (Sox14_rc)	0.774	0.413	1.535	0.878	0.880	61	63	69	53	61	61.400		; oligos_7nt_mkv5_m1 versus MA2274.1_rc (Sox14_rc); m=6/6; ncol2=11; w=0; offset=4; strand=R; shift=5; score= 61.4; -----GrACAAAG ; cor=0.774; Ncor=0.413; logoDP=1.535; NsEucl=0.878; NSW=0.880; rcor=61; rNcor=63; rlogoDP=69; rNsEucl=53; rNSW=61; rank_mean=61.400; match_rank= a 0 0 0 0 0 200.0 350.0 1000.0 0.0 1000.0 1000.0 800.0 200.0 c 0 0 0 0 0 0.0 100.0 0.0 1000.0 0.0 0.0 0.0 0.0 g 0 0 0 0 0 750.0 550.0 0.0 0.0 0.0 0.0 0.0 800.0 t 0 0 0 0 0 50.0 0.0 0.0 0.0 0.0 0.0 200.0 0.0