peak-motifs MEblack-C

Motif discovery

Motif 1 oligos_6nt_test_vs_ctrl_m1

k-mer sig=4.43; evalue=3.7e-05

stTySCCGCCGttacg

CGTAACGGCGGSRAAS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor stTySCCGCCGttacg

ESE3.ampDAP:M0061:AthalianaCistrome ESE3.ampDAP/M0061/AthalianaCistrome R 15 0.9375 0.712 0.668 NA NA

ERF8:MA0994.2:JASPAR ERF8/MA0994.2/JASPAR R 16 0.8889 0.749 0.666 NA NA

AT3G10030.ampDAP:M0779:AthalianaCistrome AT3G10030.ampDAP/M0779/AthalianaCistrome R 14 0.8235 0.788 0.649 NA NA

Total matches= 90 (87 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 32 (20.65%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr01g0019031)
Mean nb of predicted sites per peak: 1.16

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_test_vs_ctrl_m2

k-mer sig=3.79; evalue=0.00016

adCaaCGGCGGSrask

MSTYSCCGCCGTTGHT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor adCaaCGGCGGSrask

ERF13:MA1254.1:JASPAR ERF13/MA1254.1/JASPAR R 15 0.9375 0.739 0.693 NA NA

ERF115:MA2013.1:JASPAR ERF115/MA2013.1/JASPAR R 15 0.9375 0.705 0.661 NA NA

ERF13.ampDAP:M0032:AthalianaCistrome ERF13.ampDAP/M0032/AthalianaCistrome D 14 0.8235 0.768 0.633 NA NA

Total matches= 105 (102 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 38 (24.52%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr01g0019031)
Mean nb of predicted sites per peak: 1.39

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_test_vs_ctrl_m3

k-mer sig=3.12; evalue=0.00076

mhAAACCCtwm

KWAGGGTTTDK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mhAAACCCtwm

TRB1:MA2032.1:JASPAR TRB1/MA2032.1/JASPAR D 10 0.8333 0.920 0.767 NA NA

TRB1:MA2032.2:JASPAR TRB1/MA2032.2/JASPAR D 9 0.8182 0.922 0.754 NA NA

TRP5:MA1802.1:JASPAR TRP5/MA1802.1/JASPAR D 9 0.7500 0.913 0.684 NA NA

Total matches= 38 (35 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 35 (22.58%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr02g0148711)
Mean nb of predicted sites per peak: 1.14

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_test_vs_ctrl_m4

k-mer sig=3.00; evalue=0.001

tttTCCCGCCayts

SARTGGCGGGAAAA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor tttTCCCGCCayts

E2FD:MA1732.1:JASPAR E2FD/MA1732.1/JASPAR R 14 0.9333 0.816 0.762 NA NA

DEL2.ampDAP:M0366:AthalianaCistrome DEL2.ampDAP/M0366/AthalianaCistrome R 14 0.9333 0.816 0.762 NA NA

DEL1.ampDAP:M0365:AthalianaCistrome DEL1.ampDAP/M0365/AthalianaCistrome R 14 0.9333 0.814 0.760 NA NA

Total matches= 19 (16 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 26 (16.77%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr02g0152301)
Mean nb of predicted sites per peak: 1.08

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_test_vs_ctrl_m5

k-mer sig=4.43; evalue=3.7e-05

ystAACGGCkvs

SBMGCCGTTASR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ystAACGGCkvs

MYB3R3:EEAD0045:EEADannot MYB3R3/EEAD0045/EEADannot R 12 0.8571 0.951 0.815 NA NA

AT3G10030.DAP:M0781:AthalianaCistrome AT3G10030.DAP/M0781/AthalianaCistrome D 12 0.8571 0.884 0.758 NA NA

MYB119:MA1176.1:JASPAR MYB119/MA1176.1/JASPAR R 11 0.9167 0.824 0.755 NA NA

Total matches= 89 (86 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 30 (19.35%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr01g0010731)
Mean nb of predicted sites per peak: 1.03

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 oligos_6nt_test_vs_ctrl_m6

k-mer sig=0.97; evalue=0.11

drGGCCCAaym

KRTTGGGCCYH

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor drGGCCCAaym

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.8182 0.967 0.791 NA NA

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 11 0.7333 0.959 0.703 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 11 0.7333 0.937 0.687 NA NA

Total matches= 32 (29 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 24 (15.48%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr02g0152301)
Mean nb of predicted sites per peak: 1.33

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 oligos_6nt_test_vs_ctrl_m7

k-mer sig=0.92; evalue=0.12

wrrGCCCAayg

CRTTGGGCYYW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wrrGCCCAayg

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.8182 0.860 0.704 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 11 0.7333 0.922 0.676 NA NA

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 11 0.7333 0.855 0.627 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 21 (13.55%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr02g0152301)
Mean nb of predicted sites per peak: 1.29

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_6nt_test_vs_ctrl_m8

k-mer sig=0.90; evalue=0.13

rdGAGtGAGrr

YYCTCACTCHY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rdGAGtGAGrr

CURE3UTR1:EEAD0076:EEADannot CURE3UTR1/EEAD0076/EEADannot R 10 0.9091 0.811 0.737 NA NA

AT3G46070:MA1381.1:JASPAR AT3G46070/MA1381.1/JASPAR R 11 0.7333 0.914 0.670 NA NA

AT3G46070:MA1381.2:JASPAR AT3G46070/MA1381.2/JASPAR R 7 0.6364 0.975 0.620 NA NA

Total matches= 15 (12 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 47 (30.32%)
Max nb of predicted sites per peak: 6
(gene-Lalb_Chr01g0023161)
Mean nb of predicted sites per peak: 1.64

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 oligos_6nt_test_vs_ctrl_m9

k-mer sig=4.43; evalue=3.7e-05

wgtAACGGtkr

YMACCGTTACW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wgtAACGGtkr

MYB119:MA1176.1:JASPAR MYB119/MA1176.1/JASPAR R 11 1.0000 0.866 0.866 NA NA

MYB44.ampDAP:M0554:AthalianaCistrome MYB44.ampDAP/M0554/AthalianaCistrome D 11 1.0000 0.861 0.861 NA NA

MYB56:MA1174.2:JASPAR MYB56/MA1174.2/JASPAR D 10 0.9091 0.917 0.833 NA NA

Total matches= 95 (92 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 26 (16.77%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr02g0149941)
Mean nb of predicted sites per peak: 1.08

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_6nt_test_vs_ctrl_m10

k-mer sig=0.43; evalue=0.37

kmGAGCGagr

YCTCGCTCKM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kmGAGCGagr

CURE3UTR1:EEAD0076:EEADannot CURE3UTR1/EEAD0076/EEADannot R 10 1.0000 0.740 0.740 NA NA

AT3G46070:MA1381.2:JASPAR AT3G46070/MA1381.2/JASPAR R 7 0.7000 0.791 0.554 NA NA

MYB88.ampDAP:M0516:AthalianaCistrome MYB88.ampDAP/M0516/AthalianaCistrome D 10 0.7692 0.719 0.553 NA NA

Total matches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 23 (14.84%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr01g0023161)
Mean nb of predicted sites per peak: 1.43

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_7nt_test_vs_ctrl_m1

k-mer sig=2.07; evalue=0.0085

mctAAACCCTwm

KWAGGGTTTAGK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mctAAACCCTwm

TRP5:MA1802.1:JASPAR TRP5/MA1802.1/JASPAR D 10 0.8333 0.904 0.753 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 12 0.8000 0.899 0.719 NA NA

TRB1:MA2032.2:JASPAR TRB1/MA2032.2/JASPAR D 9 0.7500 0.919 0.690 NA NA

Total matches= 37 (34 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 28 (18.06%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr02g0148711)
Mean nb of predicted sites per peak: 1.14

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_7nt_test_vs_ctrl_m2

k-mer sig=1.82; evalue=0.015

csTAACGGCTms

SKAGCCGTTASG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor csTAACGGCTms

MYB3R3:EEAD0045:EEADannot MYB3R3/EEAD0045/EEADannot R 12 0.8571 0.958 0.821 NA NA

MYB70:MA1393.2:JASPAR MYB70/MA1393.2/JASPAR R 11 0.9167 0.812 0.744 NA NA

MYB119:MA1176.1:JASPAR MYB119/MA1176.1/JASPAR R 11 0.9167 0.809 0.741 NA NA

Total matches= 72 (69 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 25 (16.13%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr02g0150271)
Mean nb of predicted sites per peak: 1.08

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 oligos_7nt_test_vs_ctrl_m3

k-mer sig=1.59; evalue=0.026

gbGGCGGGaaars

SYTTTCCCGCCVC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gbGGCGGGaaars

E2FD:UN0361.1:JASPAR E2FD/UN0361.1/JASPAR D 13 0.8125 0.904 0.734 NA NA

E2FD:MA1732.1:JASPAR E2FD/MA1732.1/JASPAR D 12 0.7500 0.901 0.676 NA NA

DEL2.ampDAP:M0366:AthalianaCistrome DEL2.ampDAP/M0366/AthalianaCistrome D 12 0.7500 0.901 0.676 NA NA

Total matches= 28 (25 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 35 (22.58%)
Max nb of predicted sites per peak: 6
(gene-Lalb_Chr01g0016031)
Mean nb of predicted sites per peak: 1.49

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 oligos_7nt_test_vs_ctrl_m4

k-mer sig=0.84; evalue=0.14

kratTGGGCyk

MRGCCCAATYM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kratTGGGCyk

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR R 9 0.8182 0.914 0.748 NA NA

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR R 11 0.7333 0.910 0.668 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot D 11 0.7333 0.895 0.657 NA NA

Total matches= 19 (16 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 20 (12.90%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr02g0152301)
Mean nb of predicted sites per peak: 1.30

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 oligos_7nt_test_vs_ctrl_m5

k-mer sig=0.60; evalue=0.25

rrCGGCGGCGg

CCGCCGCCGYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrCGGCGGCGg

Zm00001d020595:MA1821.1:JASPAR Zm00001d020595/MA1821.1/JASPAR D 11 1.0000 0.951 0.951 NA NA

Zm00001d002364:MA1832.1:JASPAR Zm00001d002364/MA1832.1/JASPAR R 11 1.0000 0.944 0.944 NA NA

ERF115:MA2013.2:JASPAR ERF115/MA2013.2/JASPAR R 11 1.0000 0.933 0.933 NA NA

Total matches= 251 (248 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 34 (21.94%)
Max nb of predicted sites per peak: 10
(gene-Lalb_Chr01g0020841)
Mean nb of predicted sites per peak: 2.41

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 16 oligos_7nt_test_vs_ctrl_m6

k-mer sig=0.27; evalue=0.54

rmCGmCGCCGy

RCGGCGKCGKY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rmCGmCGCCGy

AT2G33710:MA1245.2:JASPAR AT2G33710/MA1245.2/JASPAR D 11 1.0000 0.846 0.846 NA NA

ERF3:MA1005.2:JASPAR ERF3/MA1005.2/JASPAR D 11 1.0000 0.846 0.846 NA NA

Zm00001d005892:MA1819.1:JASPAR Zm00001d005892/MA1819.1/JASPAR D 11 0.9167 0.842 0.772 NA NA

Total matches= 202 (199 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 28 (18.06%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr01g0019031)
Mean nb of predicted sites per peak: 2.32

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 17 oligos_7nt_test_vs_ctrl_m7

k-mer sig=0.07; evalue=0.85

kvaCCGTTasw

WSTAACGGTBM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kvaCCGTTasw

MYB44.ampDAP:M0554:AthalianaCistrome MYB44.ampDAP/M0554/AthalianaCistrome R 11 1.0000 0.870 0.870 NA NA

MYB119:MA1176.1:JASPAR MYB119/MA1176.1/JASPAR D 11 1.0000 0.865 0.865 NA NA

MYB56:MA1174.2:JASPAR MYB56/MA1174.2/JASPAR R 10 0.9091 0.917 0.834 NA NA

Total matches= 98 (95 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 24 (15.48%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr02g0149941)
Mean nb of predicted sites per peak: 1.12

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 18 oligos_7nt_test_vs_ctrl_m8

k-mer sig=0.05; evalue=0.89

vtCTTAaACcm

KGGTTTAAGAB

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor vtCTTAaACcm

TRP5:MA1802.1:JASPAR TRP5/MA1802.1/JASPAR D 9 0.7500 0.752 0.564 NA NA

Probable:6j4f_F:3D-footprint Probable/6j4f_F/3D-footprint R 8 0.7273 0.764 0.556 NA NA

TRANSCRIPTION:1qna_B:3D-footprint TRANSCRIPTION/1qna_B/3D-footprint D 8 0.7273 0.744 0.541 NA NA

Total matches= 10 (7 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 20 (12.90%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr02g0148711)
Mean nb of predicted sites per peak: 1.15

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 19 oligos_7nt_test_vs_ctrl_m9

k-mer sig=0.03; evalue=0.93

yyCTCaCTCwy

RWGAGTGAGRR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yyCTCaCTCwy

CURE3UTR1:EEAD0076:EEADannot CURE3UTR1/EEAD0076/EEADannot D 10 0.9091 0.814 0.740 NA NA

AT3G46070:MA1381.1:JASPAR AT3G46070/MA1381.1/JASPAR D 11 0.7333 0.905 0.664 NA NA

AT3G46070:MA1381.2:JASPAR AT3G46070/MA1381.2/JASPAR D 7 0.6364 0.970 0.617 NA NA

Total matches= 15 (12 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 33 (21.29%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr01g0023161)
Mean nb of predicted sites per peak: 1.48

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 20 oligos_7nt_test_vs_ctrl_m10

k-mer sig=0.02; evalue=0.95

gvGAACGTTCbs

SVGAACGTTCBC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gvGAACGTTCbs

HSFB2A:HSFB2A:ArabidopsisPBM HSFB2A/HSFB2A/ArabidopsisPBM D 10 0.8333 0.853 0.711 NA NA

HSFB2B:MA1666.3:JASPAR HSFB2B/MA1666.3/JASPAR D 11 0.9167 0.768 0.704 NA NA

HSFA1B:MA2019.1:JASPAR HSFA1B/MA2019.1/JASPAR D 12 1.0000 0.704 0.704 NA NA

Total matches= 45 (42 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 9 (5.81%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr02g0145071)
Mean nb of predicted sites per peak: 2.44

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 21 oligos_8nt_test_vs_ctrl_m1

k-mer sig=2.36; evalue=0.0044

vkCTtAAACCcy

RGGGTTTAAGMB

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor vkCTtAAACCcy

TRP5:MA1802.1:JASPAR TRP5/MA1802.1/JASPAR D 10 0.8333 0.874 0.728 NA NA

AT1G76870:MA1367.1:JASPAR AT1G76870/MA1367.1/JASPAR D 12 0.8571 0.706 0.605 NA NA

Probable:6j4f_F:3D-footprint Probable/6j4f_F/3D-footprint R 8 0.6667 0.841 0.561 NA NA

Total matches= 28 (25 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 26 (16.77%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr02g0153051)
Mean nb of predicted sites per peak: 1.19

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 22 oligos_8nt_test_vs_ctrl_m2

k-mer sig=2.26; evalue=0.0055

grkaGCCGTTAgk

MCTAACGGCTMYC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor grkaGCCGTTAgk

MYB3R3:EEAD0045:EEADannot MYB3R3/EEAD0045/EEADannot D 13 0.9286 0.958 0.889 NA NA

AT3G10030.DAP:M0781:AthalianaCistrome AT3G10030.DAP/M0781/AthalianaCistrome R 13 0.9286 0.796 0.739 NA NA

AT3G10030.ampDAP:M0779:AthalianaCistrome AT3G10030.ampDAP/M0779/AthalianaCistrome R 13 0.8667 0.804 0.697 NA NA

Total matches= 67 (64 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 26 (16.77%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr02g0150271)
Mean nb of predicted sites per peak: 1.12

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 23 oligos_8nt_test_vs_ctrl_m3

k-mer sig=0.52; evalue=0.3

rsGCGGGAaarg

CYTTTCCCGCSY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rsGCGGGAaarg

LBD18:MA1673.1:JASPAR LBD18/MA1673.1/JASPAR D 12 1.0000 0.773 0.773 NA NA

NTL8:UP00577A_2:UniPROBE NTL8/UP00577A_2/UniPROBE D 12 0.9231 0.757 0.699 NA NA

E2FD:UN0361.1:JASPAR E2FD/UN0361.1/JASPAR D 12 0.7500 0.907 0.680 NA NA

Total matches= 22 (19 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 39 (25.16%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr02g0152301)
Mean nb of predicted sites per peak: 1.18

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 24 oligos_8nt_test_vs_ctrl_m4

k-mer sig=0.30; evalue=0.5

kraGCCCAaTdh

DHATTGGGCTYM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kraGCCCAaTdh

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 12 0.8000 0.874 0.699 NA NA

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 12 0.8000 0.837 0.670 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.7500 0.844 0.633 NA NA

Total matches= 7 (4 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 24 (15.48%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr01g0004271)
Mean nb of predicted sites per peak: 1.33

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 25 dyads_test_vs_ctrl_m1

k-mer sig=3.62; evalue=0.00024

cmttySCCGCCGttahy

RDTAACGGCGGSRAAKG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cmttySCCGCCGttahy

ERF8:MA0994.2:JASPAR ERF8/MA0994.2/JASPAR R 17 0.9444 0.716 0.676 NA NA

PUCHI:MA1252.1:JASPAR PUCHI/MA1252.1/JASPAR D 15 0.8824 0.711 0.627 NA NA

AT3G10030.ampDAP:M0779:AthalianaCistrome AT3G10030.ampDAP/M0779/AthalianaCistrome R 14 0.7778 0.771 0.599 NA NA

Total matches= 54 (51 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 30 (19.35%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr01g0020841)
Mean nb of predicted sites per peak: 1.20

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 26 dyads_test_vs_ctrl_m2

k-mer sig=3.62; evalue=0.00024

sgGaGGsssbsGSvrvsGsGGGsg

CSCCCSCSBYBSCSVSSSCCTCCS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sgGaGGsssbsGSvrvsGsGGGsg

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 39 (25.16%)
Max nb of predicted sites per peak: 16
(gene-Lalb_Chr01g0016031)
Mean nb of predicted sites per peak: 3.18

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 27 dyads_test_vs_ctrl_m3

k-mer sig=3.62; evalue=0.00024

sgCGGcsgssgssGmskCrsb

VSYGMSKCSSCSSCSGCCGCS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sgCGGcsgssgssGmskCrsb

ERF8.DAP:M0044:AthalianaCistrome ERF8.DAP/M0044/AthalianaCistrome R 15 0.7143 0.710 0.507 NA NA

DREB2D:MA1250.2:JASPAR DREB2D/MA1250.2/JASPAR R 14 0.6667 0.722 0.481 NA NA

ERF057:MA1753.2:JASPAR ERF057/MA1753.2/JASPAR R 14 0.6667 0.721 0.481 NA NA

Total matches= 36 (33 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 23 (14.84%)
Max nb of predicted sites per peak: 23
(gene-Lalb_Chr01g0020841)
Mean nb of predicted sites per peak: 3.96

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 28 dyads_test_vs_ctrl_m4

k-mer sig=3.62; evalue=0.00024

svaaassvsSsGsmGmsktCGCsg

CSGCGAMSKCKSCSSSBSSTTTBS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor svaaassvsSsGsmGmsktCGCsg

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 18 (11.61%)
Max nb of predicted sites per peak: 6
(gene-Lalb_Chr01g0020841)
Mean nb of predicted sites per peak: 2.00

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 29 dyads_test_vs_ctrl_m5

k-mer sig=3.62; evalue=0.00024

scSCCkscsssssmsssssCsScsSss

SSSSGSSGSSSSSKSSSSSGSMGGSGS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor scSCCkscsssssmsssssCsScsSss

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 24 (15.48%)
Max nb of predicted sites per peak: 26
(gene-Lalb_Chr01g0020841)
Mean nb of predicted sites per peak: 4.42

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 30 dyads_test_vs_ctrl_m6

k-mer sig=3.62; evalue=0.00024

csCkCssysgcssCsvssbccCtCsb

VSGAGGGVSSBSGSSGCSRSSGMGSG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor csCkCssysgcssCsvssbccCtCsb

ERF48.DAP:M0128:AthalianaCistrome ERF48.DAP/M0128/AthalianaCistrome R 21 0.8077 0.710 0.574 NA NA

ESE3:MA1236.1:JASPAR ESE3/MA1236.1/JASPAR R 19 0.7308 0.707 0.517 NA NA

Total matches= 2

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 29 (18.71%)
Max nb of predicted sites per peak: 11
(gene-Lalb_Chr01g0020841)
Mean nb of predicted sites per peak: 2.41

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 31 dyads_test_vs_ctrl_m7

k-mer sig=3.62; evalue=0.00024

svaaCsvcssssscsvkcbccSbscsCss

SSGSGSVSGGVGMBSGSSSSSGBSGTTBS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor svaaCsvcssssscsvkcbccSbscsCss

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 28 (18.06%)
Max nb of predicted sites per peak: 15
(gene-Lalb_Chr01g0020841)
Mean nb of predicted sites per peak: 3.32

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 32 dyads_test_vs_ctrl_m8

k-mer sig=3.62; evalue=0.00024

scctCssssgssvCsvscgyCStCGcyg

CRGCGASGRCGSBSGBSSCSSSSGAGGS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor scctCssssgssvCsvscgyCStCGcyg

SHN3.DAP:M0127:AthalianaCistrome SHN3.DAP/M0127/AthalianaCistrome D 21 0.7500 0.710 0.533 NA NA

SHN2:UN0836.1:JASPAR SHN2/UN0836.1/JASPAR D 21 0.7500 0.710 0.533 NA NA

ERF48.DAP:M0128:AthalianaCistrome ERF48.DAP/M0128/AthalianaCistrome R 21 0.7500 0.710 0.533 NA NA

Total matches= 9 (6 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 26 (16.77%)
Max nb of predicted sites per peak: 21
(gene-Lalb_Chr01g0020841)
Mean nb of predicted sites per peak: 3.77

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 33 dyads_test_vs_ctrl_m9

k-mer sig=3.62; evalue=0.00024

sssaassssssSSmGmstCsCGSsg

CSSCGSGASKCKSSSSSSSSTTSSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sssaassssssSSmGmstCsCGSsg

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 22 (14.19%)
Max nb of predicted sites per peak: 13
(gene-Lalb_Chr01g0020841)
Mean nb of predicted sites per peak: 3.32

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 34 dyads_test_vs_ctrl_m10

k-mer sig=3.62; evalue=0.00024

cgCCGssGssSScGssgssssssssssb

VSSSSSSSSSSCSSCGSSSSCSSCGGCG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cgCCGssGssSScGssgssssssssssb

ERF9:MA1257.1:JASPAR ERF9/MA1257.1/JASPAR R 20 0.6897 0.702 0.484 NA NA

ERF9:MA1257.2:JASPAR ERF9/MA1257.2/JASPAR R 19 0.6786 0.707 0.480 NA NA

LOB.DAP:M0473:AthalianaCistrome LOB.DAP/M0473/AthalianaCistrome D 19 0.6333 0.743 0.471 NA NA

Total matches= 8 (5 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 20 (12.90%)
Max nb of predicted sites per peak: 41
(gene-Lalb_Chr01g0020841)
Mean nb of predicted sites per peak: 6.90

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]
Discovered motifs versus transcription factor databases
Motifs versus footprintDB-plants database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: MEblack-C (21/05/2025 02:19)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sgGaGGsssbsGSvrvsGsGGGsg

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor svaaassvsSsGsmGmsktCGCsg

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor scSCCkscsssssmsssssCsScsSss

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor svaaCsvcssssscsvkcbccSbscsCss

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sssaassssssSSmGmstCsCGSsg

Total matches= 0

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

RSAT - peak-motifs result

Analysis: MEblack-C (21/05/2025 02:19)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor sgGaGGsssbsGSvrvsGsGGGsg Total matches= 0

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor svaaassvsSsGsmGmsktCGCsg Total matches= 0

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor scSCCkscsssssmsssssCsScsSss Total matches= 0

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor svaaCsvcssssscsvkcbccSbscsCss Total matches= 0

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor sssaassssssSSmGmstCsCGSsg Total matches= 0

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sgGaGGsssbsGSvrvsGsGGGsg

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor svaaassvsSsGsmGmsktCGCsg

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor scSCCkscsssssmsssssCsScsSss

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor svaaCsvcssssscsvkcbccSbscsCss

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sssaassssssSSmGmstCsCGSsg

Total matches= 0