peak-motifs MEgreen

Motif discovery

Motif 1 oligos_6nt_test_vs_ctrl_m1

k-mer sig=3.94; evalue=0.00011

kkaaaaaGtCaACgr

YCGTTGACTTTTTMM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kkaaaaaGtCaACgr

WRKY43.ampDAP:M0828:AthalianaCistrome WRKY43.ampDAP/M0828/AthalianaCistrome D 15 1.0000 0.930 0.930 NA NA

WRKY24:MA1315.1:JASPAR WRKY24/MA1315.1/JASPAR R 14 0.9333 0.931 0.869 NA NA

WRKY45:MA1087.2:JASPAR WRKY45/MA1087.2/JASPAR D 14 0.8750 0.966 0.845 NA NA

Total matches= 246 (243 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 66 (9.15%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr22g0351621)
Mean nb of predicted sites per peak: 1.06

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_test_vs_ctrl_m2

k-mer sig=3.23; evalue=0.00059

dvATATTAgkr

YMCTAATATBH

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor dvATATTAgkr

ATHB22:M0844_1.02:CISBP ATHB22/M0844_1.02/CISBP R 11 0.8462 0.863 0.730 NA NA

LHY1.ampDAP:M0592:AthalianaCistrome LHY1.ampDAP/M0592/AthalianaCistrome D 11 1.0000 0.723 0.723 NA NA

At3g09600.ampDAP:M0586:AthalianaCistrome At3g09600.ampDAP/M0586/AthalianaCistrome D 11 1.0000 0.710 0.710 NA NA

Total matches= 50 (47 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 43 (5.96%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr23g0266081)
Mean nb of predicted sites per peak: 1.05

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_test_vs_ctrl_m3

k-mer sig=2.25; evalue=0.0056

msaCGtCays

SRTGACGTSK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor msaCGtCays

TGA6:MA1069.1:JASPAR TGA6/MA1069.1/JASPAR R 10 1.0000 0.931 0.931 NA NA

TGA6:M0265_1.02:CISBP TGA6/M0265_1.02/CISBP R 10 1.0000 0.930 0.930 NA NA

TGA2:M0269_1.02:CISBP TGA2/M0269_1.02/CISBP R 10 1.0000 0.916 0.916 NA NA

Total matches= 229 (226 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 84 (11.65%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr04g0256321)
Mean nb of predicted sites per peak: 1.23

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_test_vs_ctrl_m4

k-mer sig=1.71; evalue=0.019

rwGAGACACrr

YYGTGTCTCWY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rwGAGACACrr

LEC1-A:UN0424.2:JASPAR LEC1-A/UN0424.2/JASPAR R 7 0.6364 0.913 0.581 NA NA

ARF25:EEAD0033:EEADannot ARF25/EEAD0033/EEADannot D 8 0.7273 0.779 0.567 NA NA

LEC1-A:UN0424.1:JASPAR LEC1-A/UN0424.1/JASPAR R 9 0.6923 0.779 0.539 NA NA

Total matches= 21 (18 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 47 (6.52%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr19g0129771)
Mean nb of predicted sites per peak: 1.09

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_test_vs_ctrl_m5

k-mer sig=1.30; evalue=0.05

cyaTCATCAhm

KDTGATGATRG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cyaTCATCAhm

AT5G18090.DAP:M0009:AthalianaCistrome AT5G18090.DAP/M0009/AthalianaCistrome R 11 0.7333 0.854 0.626 NA NA

REM21:UN0408.1:JASPAR REM21/UN0408.1/JASPAR D 11 0.7333 0.854 0.626 NA NA

HAP3.DAP:M0352:AthalianaCistrome HAP3.DAP/M0352/AthalianaCistrome D 9 0.8182 0.716 0.586 NA NA

Total matches= 56 (53 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 160 (22.19%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr23g0273641)
Mean nb of predicted sites per peak: 1.18

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 oligos_6nt_test_vs_ctrl_m6

k-mer sig=1.24; evalue=0.058

kvATGAATgr

YCATTCATBM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kvATGAATgr

HAT1:M0851_1.02:CISBP HAT1/M0851_1.02/CISBP R 10 1.0000 0.742 0.742 NA NA

HAT1:MA1024.1:JASPAR HAT1/MA1024.1/JASPAR R 10 1.0000 0.742 0.742 NA NA

ATHB7:M0846_1.02:CISBP ATHB7/M0846_1.02/CISBP R 10 1.0000 0.705 0.705 NA NA

Total matches= 59 (56 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 140 (19.42%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr05g0215361)
Mean nb of predicted sites per peak: 1.17

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 oligos_6nt_test_vs_ctrl_m7

k-mer sig=0.24; evalue=0.58

vvCGaCaCgb

VCGTGTCGBB

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor vvCGaCaCgb

MP.DAP:M0140:AthalianaCistrome MP.DAP/M0140/AthalianaCistrome D 10 1.0000 0.742 0.742 NA NA

ARF8:M0147_1.02:CISBP ARF8/M0147_1.02/CISBP R 9 0.9000 0.806 0.726 NA NA

ARF8:MA0944.1:JASPAR ARF8/MA0944.1/JASPAR R 9 0.9000 0.805 0.725 NA NA

Total matches= 169 (166 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 86 (11.93%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr17g0341231)
Mean nb of predicted sites per peak: 1.20

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_6nt_test_vs_ctrl_m8

k-mer sig=0.50; evalue=0.32

rgTTAATAdry

RYHTATTAACY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rgTTAATAdry

WOX11:UN0413.1:JASPAR WOX11/UN0413.1/JASPAR D 11 1.0000 0.722 0.722 NA NA

WOX11.DAP:M0422:AthalianaCistrome WOX11.DAP/M0422/AthalianaCistrome D 11 1.0000 0.722 0.722 NA NA

ATHB23.ampDAP:M0855:AthalianaCistrome ATHB23.ampDAP/M0855/AthalianaCistrome R 11 1.0000 0.708 0.708 NA NA

Total matches= 63 (60 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 30 (4.16%)
Max nb of predicted sites per peak: 1
(gene-Lalb_Chr25g0286401)
Mean nb of predicted sites per peak: 1.00

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 oligos_6nt_test_vs_ctrl_m9

k-mer sig=0.08; evalue=0.83

gsATAAAAgg

CCTTTTATSC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gsATAAAAgg

TATA-box-binding:6ueq_B:3D-footprint TATA-box-binding/6ueq_B/3D-footprint R 8 0.8000 0.895 0.716 NA NA

TRANSCRIPTION:1qn4_B:3D-footprint TRANSCRIPTION/1qn4_B/3D-footprint R 8 0.8000 0.892 0.713 NA NA

TATA:1vto_B:3D-footprint TATA/1vto_B/3D-footprint D 8 0.8000 0.884 0.707 NA NA

Total matches= 38 (35 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 22 (3.05%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr17g0347721)
Mean nb of predicted sites per peak: 1.09

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_6nt_test_vs_ctrl_m10

k-mer sig=0.01; evalue=0.98

svAAACAArr

YYTTGTTTBS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor svAAACAArr

NAC007:UN0370.1:JASPAR NAC007/UN0370.1/JASPAR D 10 0.9091 0.740 0.672 NA NA

NAC101:UN0377.1:JASPAR NAC101/UN0377.1/JASPAR D 10 0.9091 0.736 0.669 NA NA

SMB:UN0380.1:JASPAR SMB/UN0380.1/JASPAR D 10 0.9091 0.736 0.669 NA NA

Total matches= 31 (28 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 28 (3.88%)
Max nb of predicted sites per peak: 1
(gene-Lalb_Chr24g0403351)
Mean nb of predicted sites per peak: 1.00

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_7nt_test_vs_ctrl_m1

k-mer sig=4.86; evalue=1.4e-05

bmaaaaGtCAACtmy

RKAGTTGACTTTTKV

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor bmaaaaGtCAACtmy

WRKY45:MA1087.2:JASPAR WRKY45/MA1087.2/JASPAR D 15 1.0000 0.948 0.948 NA NA

WRKY8.DAP:M0792:AthalianaCistrome WRKY8.DAP/M0792/AthalianaCistrome D 15 1.0000 0.927 0.927 NA NA

WRKY40.DAP:M0812:AthalianaCistrome WRKY40.DAP/M0812/AthalianaCistrome R 15 1.0000 0.905 0.905 NA NA

Total matches= 236 (233 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 59 (8.18%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr14g0371271)
Mean nb of predicted sites per peak: 1.10

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_7nt_test_vs_ctrl_m2

k-mer sig=0.78; evalue=0.17

cgTCATCaAcs

SGTTGATGACG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cgTCATCaAcs

OsLUX1:EEAD0074:EEADannot OsLUX1/EEAD0074/EEADannot D 10 0.9091 0.759 0.690 NA NA

MYB83:MA1779.2:JASPAR MYB83/MA1779.2/JASPAR D 8 0.7273 0.720 0.524 NA NA

AT5G18090:UN0847.1:JASPAR AT5G18090/UN0847.1/JASPAR D 6 0.5455 0.921 0.502 NA NA

Total matches= 44 (41 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 120 (16.64%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr25g0286391)
Mean nb of predicted sites per peak: 1.07

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 oligos_7nt_test_vs_ctrl_m3

k-mer sig=0.76; evalue=0.17

rrtGaGaCAkr

YMTGTCTCAYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrtGaGaCAkr

ARF2:MA1206.1:JASPAR ARF2/MA1206.1/JASPAR D 10 0.9091 0.717 0.652 NA NA

SGR5:MA1159.2:JASPAR SGR5/MA1159.2/JASPAR D 11 0.8462 0.721 0.610 NA NA

SGR5.ampDAP:M0303:AthalianaCistrome SGR5.ampDAP/M0303/AthalianaCistrome R 11 0.7333 0.752 0.551 NA NA

Total matches= 14 (11 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 90 (12.48%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr18g0057891)
Mean nb of predicted sites per peak: 1.13

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 oligos_7nt_test_vs_ctrl_m4

k-mer sig=0.57; evalue=0.27

rkAACaaaGha

TDCTTTGTTMY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rkAACaaaGha

REF6:MA1415.1:JASPAR REF6/MA1415.1/JASPAR D 11 1.0000 0.782 0.782 NA NA

REF6:MA1415.2:JASPAR REF6/MA1415.2/JASPAR D 9 0.8182 0.788 0.645 NA NA

Lysine-specific:6jnm_A:3D-footprint Lysine-specific/6jnm_A/3D-footprint R 7 0.6364 0.879 0.559 NA NA

Total matches= 41 (38 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 139 (19.28%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr25g0282811)
Mean nb of predicted sites per peak: 1.11

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 oligos_7nt_test_vs_ctrl_m5

k-mer sig=0.19; evalue=0.65

vgTAATATAsg

CSTATATTACB

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor vgTAATATAsg

ATHB22:M0844_1.02:CISBP ATHB22/M0844_1.02/CISBP D 11 0.8462 0.866 0.733 NA NA

PRH:M1167_1.02:CISBP PRH/M1167_1.02/CISBP R 8 0.7273 0.889 0.646 NA NA

AHL20:AHL20:ArabidopsisPBM AHL20/AHL20/ArabidopsisPBM R 9 0.7500 0.841 0.631 NA NA

Total matches= 32 (29 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 146 (20.25%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr19g0125141)
Mean nb of predicted sites per peak: 1.20

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 16 oligos_7nt_test_vs_ctrl_m6

k-mer sig=0.08; evalue=0.83

ybACGtCAtvr

YBATGACGTVR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ybACGtCAtvr

TGA1:MA0588.1:JASPAR TGA1/MA0588.1/JASPAR R 11 1.0000 0.891 0.891 NA NA

TGA9.ampDAP:M0184:AthalianaCistrome TGA9.ampDAP/M0184/AthalianaCistrome R 11 1.0000 0.883 0.883 NA NA

TGA4:MA1335.1:JASPAR TGA4/MA1335.1/JASPAR D 11 1.0000 0.849 0.849 NA NA

Total matches= 189 (186 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 41 (5.69%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr09g0333491)
Mean nb of predicted sites per peak: 1.15

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 17 oligos_8nt_test_vs_ctrl_m1

k-mer sig=8.10; evalue=7.9e-09

rvAAAGtCAAagr

YCTTTGACTTTBY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rvAAAGtCAAagr

WRKY45.DAP:M0805:AthalianaCistrome WRKY45.DAP/M0805/AthalianaCistrome R 12 0.9231 0.934 0.863 NA NA

WRKY17.ampDAP:M0837:AthalianaCistrome WRKY17.ampDAP/M0837/AthalianaCistrome D 13 1.0000 0.862 0.862 NA NA

WRKY59:MA1304.1:JASPAR WRKY59/MA1304.1/JASPAR D 12 0.9231 0.920 0.849 NA NA

Total matches= 262 (259 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 99 (13.73%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr17g0348471)
Mean nb of predicted sites per peak: 1.05

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 18 oligos_8nt_test_vs_ctrl_m2

k-mer sig=0.51; evalue=0.31

vcaCGtGtCGkk

MMCGACACGTGB

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor vcaCGtGtCGkk

ATAREB1:M0256_1.02:CISBP ATAREB1/M0256_1.02/CISBP R 12 0.9231 0.868 0.801 NA NA

ABF2:MA0941.1:JASPAR ABF2/MA0941.1/JASPAR R 12 0.9231 0.868 0.801 NA NA

ABF1:MA0570.2:JASPAR ABF1/MA0570.2/JASPAR D 12 1.0000 0.794 0.794 NA NA

Total matches= 309 (306 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 101 (14.01%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr17g0341231)
Mean nb of predicted sites per peak: 1.36

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 19 oligos_8nt_test_vs_ctrl_m3

k-mer sig=0.08; evalue=0.83

rraGTCaaCGty

RACGTTGACTYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rraGTCaaCGty

AT3G42860:UN0354.1:JASPAR AT3G42860/UN0354.1/JASPAR D 12 1.0000 0.985 0.985 NA NA

WRKY55:MA1305.1:JASPAR WRKY55/MA1305.1/JASPAR R 12 1.0000 0.977 0.977 NA NA

WRKY24.ampDAP:M0803:AthalianaCistrome WRKY24.ampDAP/M0803/AthalianaCistrome R 12 0.9231 0.973 0.898 NA NA

Total matches= 182 (179 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 92 (12.76%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr22g0360751)
Mean nb of predicted sites per peak: 1.11

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 20 dyads_test_vs_ctrl_m1

k-mer sig=3.38; evalue=0.00042

rtATAgksgscTAAkw

WMTTAGSCSMCTATAY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rtATAgksgscTAAkw

HMGB9:UN0401.1:JASPAR HMGB9/UN0401.1/JASPAR D 11 0.6875 0.733 0.504 NA NA

At1g76110.DAP:M0146:AthalianaCistrome At1g76110.DAP/M0146/AthalianaCistrome D 11 0.6875 0.733 0.504 NA NA

ATHB23:MA1327.2:JASPAR ATHB23/MA1327.2/JASPAR D 10 0.6250 0.741 0.463 NA NA

Total matches= 8 (5 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 69 (9.57%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr22g0361171)
Mean nb of predicted sites per peak: 1.07

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 21 dyads_test_vs_ctrl_m2

k-mer sig=3.34; evalue=0.00046

rgAaasksrvyrdrTGArr

YYTCAYHYRBYSMSTTTCY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rgAaasksrvyrdrTGArr

At3g45610.ampDAP:M0254:AthalianaCistrome At3g45610.ampDAP/M0254/AthalianaCistrome R 14 0.7000 0.792 0.555 NA NA

dof24.DAP:M0252:AthalianaCistrome dof24.DAP/M0252/AthalianaCistrome R 14 0.7000 0.768 0.537 NA NA

COG1.ampDAP:M0276:AthalianaCistrome COG1.ampDAP/M0276/AthalianaCistrome R 14 0.7000 0.759 0.531 NA NA

Total matches= 22 (19 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 85 (11.79%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr22g0360751)
Mean nb of predicted sites per peak: 1.05

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 22 dyads_test_vs_ctrl_m3

k-mer sig=3.38; evalue=0.00042

gsaatggssgcrtwatCGtkk

MMACGATWAYGCSSCCATTSC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gsaatggssgcrtwatCGtkk

ATHB33.ampDAP:M0859:AthalianaCistrome ATHB33.ampDAP/M0859/AthalianaCistrome R 14 0.6364 0.723 0.460 NA NA

ATHB34.ampDAP:M0854:AthalianaCistrome ATHB34.ampDAP/M0854/AthalianaCistrome R 14 0.6364 0.720 0.458 NA NA

Total matches= 2

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 55 (7.63%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr23g0266081)
Mean nb of predicted sites per peak: 1.07

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 23 dyads_test_vs_ctrl_m4

k-mer sig=3.26; evalue=0.00055

tmTAAsksrsyrdwATayr

YRTATWHYRSYSMSTTAKA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor tmTAAsksrsyrdwATayr

Os02g0706600:M1116_1.02:CISBP Os02g0706600/M1116_1.02/CISBP D 10 0.5263 0.849 0.447 NA NA

MYB113:MA1181.1:JASPAR MYB113/MA1181.1/JASPAR R 11 0.5789 0.741 0.429 NA NA

ATHB22:M0844_1.02:CISBP ATHB22/M0844_1.02/CISBP D 12 0.6000 0.704 0.423 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 74 (10.26%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr18g0046221)
Mean nb of predicted sites per peak: 1.08

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 24 dyads_test_vs_ctrl_m5

k-mer sig=3.38; evalue=0.00042

kratATrsysgcrtwattaaaavs

SBTTTTAATWAYGCSRSYATATYM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kratATrsysgcrtwattaaaavs

ATHB24.ampDAP:M0858:AthalianaCistrome ATHB24.ampDAP/M0858/AthalianaCistrome D 15 0.6250 0.798 0.499 NA NA

ATHB33.ampDAP:M0859:AthalianaCistrome ATHB33.ampDAP/M0859/AthalianaCistrome D 15 0.6250 0.794 0.496 NA NA

ATHB24:MA1330.1:JASPAR ATHB24/MA1330.1/JASPAR D 15 0.6250 0.788 0.492 NA NA

Total matches= 7 (4 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 36 (4.99%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr22g0353111)
Mean nb of predicted sites per peak: 1.06

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 25 dyads_test_vs_ctrl_m6

k-mer sig=3.38; evalue=0.00042

rsaaasssggyrwtdRwykkwwttGakg

CMTCAAWWMMRWYHAWYRCCSSSTTTSY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rsaaasssggyrwtdRwykkwwttGakg

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 64 (8.88%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr13g0299441)
Mean nb of predicted sites per peak: 1.05

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 26 dyads_test_vs_ctrl_m7

k-mer sig=3.38; evalue=0.00042

dsaTaksvgvctaatakkwttakk

MMTAAWMMTATTAGBCBSMTATSH

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor dsaTaksvgvctaatakkwttakk

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 48 (6.66%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr11g0063101)
Mean nb of predicted sites per peak: 1.08

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 27 dyads_test_vs_ctrl_m8

k-mer sig=3.38; evalue=0.00042

graatggssgcwtwatykkawtGaGrk

MYCTCAWTMMRATWAWGCSSCCATTYC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor graatggssgcwtwatykkawtGaGrk

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 34 (4.72%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr14g0364841)
Mean nb of predicted sites per peak: 1.03

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 28 dyads_test_vs_ctrl_m9

k-mer sig=3.38; evalue=0.00042

rkaatggmsrsdtwatykwtGask

MSTCAWMRATWAHSYSKCCATTMY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rkaatggmsrsdtwatykwtGask

ATHB34.ampDAP:M0854:AthalianaCistrome ATHB34.ampDAP/M0854/AthalianaCistrome R 14 0.5600 0.760 0.426 NA NA

ATHB33.ampDAP:M0859:AthalianaCistrome ATHB33.ampDAP/M0859/AthalianaCistrome R 14 0.5600 0.742 0.415 NA NA

Total matches= 2

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 53 (7.35%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr15g0080071)
Mean nb of predicted sites per peak: 1.02

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 29 dyads_test_vs_ctrl_m10

k-mer sig=3.38; evalue=0.00042

kwaatsgssgcwtwatykkawtatttakw

WMTAAATAWTMMRATWAWGCSSCSATTWM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kwaatsgssgcwtwatykkawtatttakw

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 30 (4.16%)
Max nb of predicted sites per peak: 1
(gene-Lalb_Chr25g0282811)
Mean nb of predicted sites per peak: 1.00

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]
Discovered motifs versus transcription factor databases
Motifs versus footprintDB-plants database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: MEgreen (21/05/2025 03:14)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rsaaasssggyrwtdRwykkwwttGakg

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor dsaTaksvgvctaatakkwttakk

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor graatggssgcwtwatykkawtGaGrk

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kwaatsgssgcwtwatykkawtatttakw

Total matches= 0

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

RSAT - peak-motifs result

Analysis: MEgreen (21/05/2025 03:14)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor rsaaasssggyrwtdRwykkwwttGakg Total matches= 0

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor dsaTaksvgvctaatakkwttakk Total matches= 0

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor graatggssgcwtwatykkawtGaGrk Total matches= 0

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor kwaatsgssgcwtwatykkawtatttakw Total matches= 0

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rsaaasssggyrwtdRwykkwwttGakg

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor dsaTaksvgvctaatakkwttakk

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor graatggssgcwtwatykkawtGaGrk

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kwaatsgssgcwtwatykkawtatttakw

Total matches= 0