; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.tf -from transfac -to tab -return counts -return sites -o $RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.tf
; Input format        	transfac
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/dyads/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.txt
; Output format       	tab
; pseudo-weight       	1
a	28	20	80	80	0	0	80	0	17	29	24
c	15	18	0	0	3	0	0	0	8	13	16
g	12	14	0	0	0	80	0	0	19	20	12
t	25	28	0	0	77	0	0	80	36	18	28
//
; Sites	80
>site_0
CTAATGATTTA
>site_1
TTAATGATTAA
>site_2
GTAATGATTAA
>site_3
TTAATGATTAA
>site_4
AAAATGATTGA
>site_5
CCAATGATCAA
>site_6
ATAATGATACA
>site_7
CTAATGATTCT
>site_8
CTAATGATTTT
>site_9
ATAATGATTCT
>site_10
TGAATGATTCC
>site_11
GAAATGATGAT
>site_12
TGAATGATAGT
>site_13
GAAATGATTTT
>site_14
AGAATGATGGT
>site_15
AGAATGATGAA
>site_16
TAAATGATTAT
>site_17
TCAATGATTTT
>site_18
TAAATGATTAT
>site_19
TAAATGATAGT
>site_20
ACAATGATAAC
>site_21
CCAATGATAGC
>site_22
TGAATGATGGT
>site_23
CAAACGATTAA
>site_24
TGAATGATATT
>site_25
ACAATGATATT
>site_26
TTAATGATCAA
>site_27
ATAATGATTAA
>site_28
CTAACGATTAT
>site_29
CCAATGATCCC
>site_30
ATAATGATGAC
>site_31
AGAATGATGGA
>site_32
TTAATGATGAG
>site_33
CTAATGATACG
>site_34
GAAATGATGTA
>site_35
GAAATGATAAC
>site_36
ACAATGATTAT
>site_37
AGAATGATGAA
>site_38
GAAATGATCAT
>site_39
TGAATGATTGA
>site_40
CTAATGATGTG
>site_41
CCAATGATGGC
>site_42
CTAATGATTAT
>site_43
AGAATGATTCA
>site_44
GCAATGATTGC
>site_45
ACAATGATTGC
>site_46
GTAATGATCTG
>site_47
TCAATGATTCC
>site_48
TGAATGATGAA
>site_49
ATAATGATTCA
>site_50
AAAATGATTGC
>site_51
CTAATGATGAG
>site_52
GAAATGATTGG
>site_53
AAAATGATGGC
>site_54
TCAATGATCTG
>site_55
ATAATGATATT
>site_56
AAAATGATGGG
>site_57
TCAATGATCCT
>site_58
AAAATGATAGT
>site_59
TGAATGATTGA
>site_60
TTAATGATCCA
>site_61
AAAATGATAAT
>site_62
ATAATGATTGG
>site_63
AAAATGATAAC
>site_64
TTAATGATGTT
>site_65
TAAATGATTTA
>site_66
AGAATGATATG
>site_67
TTAATGATAGA
>site_68
GGAATGATGAA
>site_69
GAAATGATTCT
>site_70
AAAATGATTCT
>site_71
CTAATGATGAT
>site_72
CTAACGATTAC
>site_73
TCAATGATTAT
>site_74
TCAATGATGAG
>site_75
TTAATGATTTC
>site_76
ATAATGATTGA
>site_77
ACAATGATATC
>site_78
ACAATGATTTT
>site_79
GCAATGATATG
a	24	19	10	10	46	4	48	3	49	51	2	9	25	17
c	5	5	2	5	1	3	1	3	1	0	1	3	7	6
g	14	15	41	39	5	44	4	49	6	5	48	43	15	15
t	14	18	4	3	5	6	4	2	1	1	6	2	10	19
//
; Sites	57
>site_0
CCTGAGAGAAGGGC
>site_1
CGGGCGGGCAGGCC
>site_2
AGAGGGAGAAGGCT
>site_3
ATGCAGAGAAGGAG
>site_4
TAGGTGAGGAGGAG
>site_5
TGACAGAGAAGGTT
>site_6
TAGAATAGAAGGGG
>site_7
ATAGGGAGAAGGTG
>site_8
GTGAAGAGAGGGAA
>site_9
AGAAAGAGAAGGCC
>site_10
AGGGAGAGGGGGAA
>site_11
ATGAAGAGAAGGTT
>site_12
GTGATGCGAAGGTT
>site_13
AAGGTGACGAGGCG
>site_14
AAGCAGGGAAGGGA
>site_15
GGAGAGAAAAGGTG
>site_16
TTGGAGAGAAAAGG
>site_17
ACGGAGGGAGGGAT
>site_18
TAGGATAGAATGAG
>site_19
TTGAAGAGAAGAGG
>site_20
TAGTAGAGAGGGAC
>site_21
GAGGAGAGAACCAA
>site_22
AAGAATAGAAGGAT
>site_23
GCCGAGAGAAGTGT
>site_24
ATGGAGAGAATGCT
>site_25
GGTGAGAGAAGCTT
>site_26
GGCGGGAGTAGGAC
>site_27
TAGGAGTGAAGTTA
>site_28
TTAGAGAGAATGAT
>site_29
TGAGAAAGAAGGAA
>site_30
GTGGAGAGAGTGTA
>site_31
AAGGACAGAATGAT
>site_32
ACGGATAGAAGAAT
>site_33
TTGGAGGGGAGGGT
>site_34
AAGAAGACAAGGCA
>site_35
AGGCATAGAAGGGA
>site_36
AGGTAGAAAAGGAA
>site_37
AGGGAGAGAATCAC
>site_38
CTGATGAGAAGGGT
>site_39
AAGGAGACAAGGGT
>site_40
ATGGAGAGAAAACA
>site_41
GAGGAGAGATGATG
>site_42
TAGCATAGAAGGGG
>site_43
GTGGACATAAGGAA
>site_44
GTGGGGAGAAGAGT
>site_45
GAAGAGTGAAGGAG
>site_46
TAGAAGAGAAGGAA
>site_47
CCTGAGAGAAGAAG
>site_48
AAGGAAAGGAGGAA
>site_49
AGGGGGAGGAGGAG
>site_50
ATATAGAGAAGGAG
>site_51
AGGGAAAGAAGAGT
>site_52
GAGGAGTGAAGATA
>site_53
TTGGTGAAAAGGAA
>site_54
CTTGAAAGAAGGGT
>site_55
GAGGACATAAGGGT
>site_56
AGAGAGTGAAGGAA
a	24	23	1	0	1	21	13	22	16	18	21	25	20	1	3	0	25	14
c	17	18	64	1	1	19	16	11	15	17	20	14	14	0	0	66	15	13
g	10	9	0	2	0	7	10	6	9	7	8	9	8	0	1	0	5	11
t	15	16	1	63	64	19	27	27	26	24	17	18	24	65	62	0	21	28
//
; Sites	66
>site_0
TCCTTGCTCGAATTTCTT
>site_1
CACTTTGGTTCAATTCTC
>site_2
AACTTATATACTATTCAG
>site_3
GGCTTCTCTGTCATTCTT
>site_4
AACTTGGAACCCCTTCTA
>site_5
CACTTTGGTAATTTTCAT
>site_6
CACTTGTTCGTTATTCCT
>site_7
ACCTTTCCCTCTCTTCAC
>site_8
AGCTTAATAACCATTCTA
>site_9
CACTTTCTTAAACTTCTT
>site_10
GGCTTATATCAGGTACGC
>site_11
TACTACCTTACGTTTCCT
>site_12
TCCTTTTATGGATTTCCC
>site_13
CCCTTCCCTGCTTTTCCC
>site_14
ACCTTACGATAAATGCTA
>site_15
ATCTTCCTAAATATTCAC
>site_16
TGCTTATTTCAAATTCCT
>site_17
ATCTTAATACTACATCCG
>site_18
TACCTCTTCTTAGTTCGT
>site_19
GACTTTTAACACATTCGG
>site_20
ACCTTAATTACCTTACGC
>site_21
ATCTTTAAGTAATTTCAA
>site_22
CACGTAACGTAATTTCTG
>site_23
TGCTTTTTTAGGGTTCCT
>site_24
CACTTATTGCCTTTTCAT
>site_25
CCCTTATTGCCTTTTCAT
>site_26
CCCTTATTGCCTTTTCAT
>site_27
GCCTTAAAGTCACTTCAA
>site_28
ATCTTCATTTCCTTTCTT
>site_29
GACTTTAAATTATTACGG
>site_30
AACTTATCTCTTATTCCT
>site_31
TTCTTAACCAAAGTTCCT
>site_32
CTCTTCCTTCCATTTCTT
>site_33
AACTTTTTCTAATTTCAC
>site_34
TACGTGTAGGATTTTCTA
>site_35
CACTTGGACTAGATTCAA
>site_36
CGATTACCGATCCTTCAT
>site_37
ACCTTTGTTAAGATTCAG
>site_38
ACCTTCCATTCATTTCTT
>site_39
TTCTTGTTCTTTCTTCCA
>site_40
AGCTTATTTCTCTTTCAC
>site_41
ATCTTTCAATGAATTCTT
>site_42
ACCTCGTGTATACTTCTA
>site_43
ATCTTCCTATTTATTCAC
>site_44
TTCTTCCACAACCTTCAT
>site_45
GTCTTATCTACCATTCAT
>site_46
ACCTTTTTAAGTCTTCAG
>site_47
AACTTCTGTACAATTCAT
>site_48
CCCTTACCCCTCTTTCTA
>site_49
TACTTTGTCTTATTTCAG
>site_50
GACTTATGAGTTATTCAG
>site_51
CGTTTCGCTTGTTTTCTC
>site_52
CTCTTCTACCACATTCTT
>site_53
GCCTTAGAAATGGTTCTT
>site_54
TCCTTAAAATGAATTCCA
>site_55
CTCTTCTCCCCACTTCTC
>site_56
ATCTTCCATATCATTCTT
>site_57
TTCTTCAATTATCTTCAC
>site_58
ACCTTTGTCTTGGTTCAG
>site_59
GTCTTTAAGTAGGTTCTT
>site_60
AACTTTGAACCCTTTCCA
>site_61
TACTTCCTTTAGTTTCAG
>site_62
GACTTTTAATGATTTCAT
>site_63
CCCTTCTTTCAAGTTCCA
>site_64
AGCTTCAAACCACTTCCA
>site_65
TACTTTTTCTGTCTTCCT
a	18	19	63	0	0	61	63	63	25	25
c	12	16	0	63	62	0	0	0	9	12
g	13	10	0	0	1	2	0	0	11	4
t	20	18	0	0	0	0	0	0	18	22
//
; Sites	63
>site_0
TGACCAAACA
>site_1
GAACCAAAGT
>site_2
ACACCAAATT
>site_3
TTACCAAAAA
>site_4
TTACCAAAGT
>site_5
TAACCAAAAA
>site_6
TAACCAAATC
>site_7
CTACCAAACA
>site_8
CAACCAAAAG
>site_9
CAACCAAATC
>site_10
GCACCAAAAA
>site_11
TGACCAAATA
>site_12
CCACCAAAGA
>site_13
GGACCAAATT
>site_14
AAACCAAATT
>site_15
CCACCAAAAT
>site_16
TGACCAAAGC
>site_17
GTACCAAACA
>site_18
GTACCAAAAT
>site_19
ACACCAAAAC
>site_20
CGACGAAATC
>site_21
TCACCAAAAT
>site_22
TCACCAAATA
>site_23
ATACCAAAAA
>site_24
ATACCAAAAA
>site_25
AGACCAAACT
>site_26
TCACCAAAAA
>site_27
CCACCAAAAG
>site_28
AAACCAAATT
>site_29
GAACCAAAAA
>site_30
TAACCAAAGT
>site_31
CCACCAAACA
>site_32
CCACCAAATT
>site_33
AAACCAAAAC
>site_34
TTACCAAAAT
>site_35
GAACCAAATC
>site_36
ATACCAAATA
>site_37
CCACCAAAGG
>site_38
TGACCAAAAT
>site_39
AAACCAAAGT
>site_40
AGACCAAACA
>site_41
ATACCAAAGC
>site_42
TAACCAAACT
>site_43
GCACCAAATC
>site_44
ATACCAAAGT
>site_45
GGACCAAAAG
>site_46
TAACCAAAAC
>site_47
TAACCAAAAA
>site_48
GCACCAAAGT
>site_49
TTACCAAAAT
>site_50
AAACCAAAAT
>site_51
GAACCAAAAT
>site_52
CTACCAAACA
>site_53
TTACCAAAAA
>site_54
CAACCAAAAT
>site_55
GTACCAAAAA
>site_56
ACACCAAATC
>site_57
TCACCAAATA
>site_58
AAACCAAATA
>site_59
TGACCAAAGA
>site_60
ATACCGAATA
>site_61
GTACCGAATA
>site_62
ATACCAAACC
a	21	18	1	0	52	24	12	48	4	54	19	22
c	10	13	58	0	3	13	15	3	49	2	15	14
g	13	11	1	57	2	8	12	1	2	2	8	10
t	16	18	0	3	3	15	21	8	5	2	18	14
//
; Sites	60
>site_0
CTCGAATACAAG
>site_1
TTCGTTCACAGC
>site_2
AGCGAGAACAGC
>site_3
AACGACTTCACC
>site_4
GGCGAAAACAAA
>site_5
GTCGGCGACATT
>site_6
GTCGCCGACACA
>site_7
ATCGATAAAAAG
>site_8
TCCGAAGCCATG
>site_9
ATCGAATAGATT
>site_10
CACGAACACAAA
>site_11
AGCGAGAATAAT
>site_12
ACCGACGAAATC
>site_13
CACGCACACACT
>site_14
AACGAAAACACA
>site_15
TACGAATAGACA
>site_16
TCCGAATTCAAG
>site_17
AACGAGAATAGC
>site_18
TTCGCAGACATA
>site_19
CTCGAAGACATA
>site_20
GCCGATATCAAT
>site_21
TTCGATTACCGA
>site_22
ATCGAATACATA
>site_23
TACGATGACGAA
>site_24
GACGAACTCAAT
>site_25
CACGATTACACT
>site_26
TGCGAAGTCATG
>site_27
CACGTGTACATC
>site_28
CGCTACGACATG
>site_29
GCCGAATATAAT
>site_30
GACGATAGCAAA
>site_31
TCCGAATTCAAG
>site_32
GACGAGGATAGC
>site_33
ATCGAAAAAATA
>site_34
TTCGATCATATT
>site_35
CGCGATGAAAAA
>site_36
TGCGAATACCCA
>site_37
GACGACAACATT
>site_38
GTAGACGACAAC
>site_39
AACGACCACAGC
>site_40
AACGACCACAGC
>site_41
TTCGAATACGTC
>site_42
AGCGAATTCAAG
>site_43
GCCGACCACACA
>site_44
CTCGAGCCCAAA
>site_45
AACGACCCCATA
>site_46
AACGATTACACA
>site_47
TACGATTACACT
>site_48
AGCGGACACACA
>site_49
ACCGTCTACAAT
>site_50
GCGGATCACACG
>site_51
ACCGACCACTTA
>site_52
TCCGAGAACACC
>site_53
GTCTAGTACACG
>site_54
TTCGATCTCATC
>site_55
ACCGAATACAAA
>site_56
ACCGAATACAGA
>site_57
AGCGATTACACT
>site_58
CGCTATAACAAC
>site_59
TTCGAACACTTT
; Host name	rsat
; Job started	2025-05-21.033937
; Job done	2025-05-21.033937
; Seconds	0.1
;	user	0.11
;	system	0.01
;	cuser	0
;	csystem	0
