position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/data/sequences/peak-motifs_test_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title MEyellowgreen -origin center -offset 200 -o $RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/data/sequences/peak-motifs_test_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 88 Sum of sequence lengths 57750 Min sequence length 0 Max sequence length 701 Average sequence length 656 Possible positions 57750 Sequences: # length ID 1 611 gene-Lalb_Chr00c24g0406831 2 701 gene-Lalb_Chr01g0001801 3 701 gene-Lalb_Chr01g0008121 4 701 gene-Lalb_Chr01g0009301 5 701 gene-Lalb_Chr01g0012001 6 202 gene-Lalb_Chr01g0016101 7 701 gene-Lalb_Chr02g0144501 8 701 gene-Lalb_Chr02g0151961 9 202 gene-Lalb_Chr02g0152161 10 701 gene-Lalb_Chr02g0156751 11 701 gene-Lalb_Chr03g0026011 12 701 gene-Lalb_Chr03g0035161 13 701 gene-Lalb_Chr03g0037551 14 701 gene-Lalb_Chr04g0259191 15 701 gene-Lalb_Chr04g0260441 16 701 gene-Lalb_Chr04g0262831 17 701 gene-Lalb_Chr04g0264021 18 701 gene-Lalb_Chr05g0214501 19 585 gene-Lalb_Chr05g0216101 20 701 gene-Lalb_Chr05g0217101 21 701 gene-Lalb_Chr05g0217281 22 701 gene-Lalb_Chr05g0219491 23 701 gene-Lalb_Chr05g0223341 24 701 gene-Lalb_Chr05g0227741 25 203 gene-Lalb_Chr05g0227751 26 701 gene-Lalb_Chr06g0161461 27 701 gene-Lalb_Chr06g0161941 28 701 gene-Lalb_Chr06g0166891 29 701 gene-Lalb_Chr06g0168661 30 701 gene-Lalb_Chr07g0178161 31 701 gene-Lalb_Chr07g0180541 32 701 gene-Lalb_Chr07g0180821 33 433 gene-Lalb_Chr07g0180831 34 701 gene-Lalb_Chr07g0187151 35 701 gene-Lalb_Chr07g0191031 36 701 gene-Lalb_Chr07g0192381 37 701 gene-Lalb_Chr08g0230351 38 701 gene-Lalb_Chr08g0234091 39 353 gene-Lalb_Chr08g0244741 40 701 gene-Lalb_Chr09g0319561 41 600 gene-Lalb_Chr09g0325191 42 701 gene-Lalb_Chr10g0107301 43 701 gene-Lalb_Chr11g0065221 44 701 gene-Lalb_Chr11g0072671 45 701 gene-Lalb_Chr12g0196441 46 701 gene-Lalb_Chr12g0199491 47 701 gene-Lalb_Chr12g0201931 48 701 gene-Lalb_Chr12g0202371 49 331 gene-Lalb_Chr12g0205621 50 701 gene-Lalb_Chr13g0291881 51 701 gene-Lalb_Chr13g0297221 52 701 gene-Lalb_Chr13g0301351 53 701 gene-Lalb_Chr13g0301811 54 701 gene-Lalb_Chr13g0302971 55 701 gene-Lalb_Chr13g0303091 56 701 gene-Lalb_Chr14g0369321 57 701 gene-Lalb_Chr14g0373971 58 701 gene-Lalb_Chr15g0084041 59 701 gene-Lalb_Chr15g0084761 60 701 gene-Lalb_Chr15g0088971 61 701 gene-Lalb_Chr17g0337651 62 701 gene-Lalb_Chr17g0346901 63 701 gene-Lalb_Chr17g0347481 64 701 gene-Lalb_Chr17g0347641 65 701 gene-Lalb_Chr17g0349311 66 701 gene-Lalb_Chr18g0048151 67 701 gene-Lalb_Chr18g0058161 68 203 gene-Lalb_Chr18g0061041 69 701 gene-Lalb_Chr19g0128211 70 684 gene-Lalb_Chr19g0131941 71 701 gene-Lalb_Chr19g0137261 72 701 gene-Lalb_Chr20g0121371 73 701 gene-Lalb_Chr21g0305031 74 701 gene-Lalb_Chr21g0305331 75 202 gene-Lalb_Chr21g0307691 76 701 gene-Lalb_Chr21g0308191 77 701 gene-Lalb_Chr21g0308331 78 701 gene-Lalb_Chr21g0315101 79 701 gene-Lalb_Chr22g0361641 80 701 gene-Lalb_Chr23g0265531 81 701 gene-Lalb_Chr23g0266471 82 701 gene-Lalb_Chr23g0267141 83 566 gene-Lalb_Chr23g0273391 84 701 gene-Lalb_Chr24g0395711 85 701 gene-Lalb_Chr24g0398961 86 701 gene-Lalb_Chr25g0280091 87 701 gene-Lalb_Chr25g0280691 88 701 gene-Lalb_Chr25g0289111 Oligonucleotide statistics: Total occurrences 40043 Position interval parameters: Position interval 20 Number of windows 36 Total positions 57750 Degrees of freedom 35 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -28 [-559,-540] -549.5 76 827 2 -27 [-539,-520] -529.5 76 1520 3 -26 [-519,-500] -509.5 77 1526 4 -25 [-499,-480] -489.5 80 1577 5 -24 [-479,-460] -469.5 80 1600 6 -23 [-459,-440] -449.5 80 1600 7 -22 [-439,-420] -429.5 80 1600 8 -21 [-419,-400] -409.5 81 1617 9 -20 [-399,-380] -389.5 81 1620 10 -19 [-379,-360] -369.5 83 1643 11 -18 [-359,-340] -349.5 83 1660 12 -17 [-339,-320] -329.5 83 1660 13 -16 [-319,-300] -309.5 88 1670 14 -15 [-299,-280] -289.5 88 1760 15 -14 [-279,-260] -269.5 88 1760 16 -13 [-259,-240] -249.5 88 1760 17 -12 [-239,-220] -229.5 88 1760 18 -11 [-219,-200] -209.5 88 1760 19 -10 [-199,-180] -189.5 88 1760 20 -9 [-179,-160] -169.5 88 1760 21 -8 [-159,-140] -149.5 88 1760 22 -7 [-139,-120] -129.5 88 1760 23 -6 [-119,-100] -109.5 88 1760 24 -5 [-99,-80] -89.5 85 1662 25 -4 [-79,-60] -69.5 83 1660 26 -3 [-59,-40] -49.5 83 1660 27 -2 [-39,-20] -29.5 83 1641 28 -1 [-19,0] -9.5 81 1620 29 0 [1,20] 10.5 81 1616 30 1 [21,40] 30.5 80 1600 31 2 [41,60] 50.5 80 1600 32 3 [61,80] 70.5 80 1600 33 4 [81,100] 90.5 80 1574 34 5 [101,120] 110.5 77 1525 35 6 [121,140] 130.5 76 1520 36 7 [141,160] 150.5 76 752 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -549.5 occurrences in window 1 [-559,-540] 11 -529.5 occurrences in window 2 [-539,-520] 12 -509.5 occurrences in window 3 [-519,-500] 13 -489.5 occurrences in window 4 [-499,-480] 14 -469.5 occurrences in window 5 [-479,-460] 15 -449.5 occurrences in window 6 [-459,-440] 16 -429.5 occurrences in window 7 [-439,-420] 17 -409.5 occurrences in window 8 [-419,-400] 18 -389.5 occurrences in window 9 [-399,-380] 19 -369.5 occurrences in window 10 [-379,-360] 20 -349.5 occurrences in window 11 [-359,-340] 21 -329.5 occurrences in window 12 [-339,-320] 22 -309.5 occurrences in window 13 [-319,-300] 23 -289.5 occurrences in window 14 [-299,-280] 24 -269.5 occurrences in window 15 [-279,-260] 25 -249.5 occurrences in window 16 [-259,-240] 26 -229.5 occurrences in window 17 [-239,-220] 27 -209.5 occurrences in window 18 [-219,-200] 28 -189.5 occurrences in window 19 [-199,-180] 29 -169.5 occurrences in window 20 [-179,-160] 30 -149.5 occurrences in window 21 [-159,-140] 31 -129.5 occurrences in window 22 [-139,-120] 32 -109.5 occurrences in window 23 [-119,-100] 33 -89.5 occurrences in window 24 [-99,-80] 34 -69.5 occurrences in window 25 [-79,-60] 35 -49.5 occurrences in window 26 [-59,-40] 36 -29.5 occurrences in window 27 [-39,-20] 37 -9.5 occurrences in window 28 [-19,0] 38 10.5 occurrences in window 29 [1,20] 39 30.5 occurrences in window 30 [21,40] 40 50.5 occurrences in window 31 [41,60] 41 70.5 occurrences in window 32 [61,80] 42 90.5 occurrences in window 33 [81,100] 43 110.5 occurrences in window 34 [101,120] 44 130.5 occurrences in window 35 [121,140] 45 150.5 occurrences in window 36 [141,160]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -549.5 | -529.5 | -509.5 | -489.5 | -469.5 | -449.5 | -429.5 | -409.5 | -389.5 | -369.5 | -349.5 | -329.5 | -309.5 | -289.5 | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| c | c | 7341 | 324.9 | 35 | 1.1e-48 | 4.3e-48 | 47.36 | 1 | 88 | 140 | 133 | 176 | 173 | 189 | 179 | 164 | 155 | 194 | 174 | 156 | 160 | 195 | 199 | 200 | 229 | 210 | 202 | 190 | 193 | 219 | 220 | 223 | 222 | 271 | 252 | 249 | 270 | 272 | 265 | 249 | 261 | 263 | 275 | 131 |
| t | t | 13088 | 209.6 | 35 | 9.1e-27 | 3.6e-26 | 25.44 | 2 | 171 | 305 | 330 | 345 | 346 | 335 | 355 | 325 | 332 | 313 | 331 | 332 | 292 | 348 | 379 | 354 | 377 | 351 | 375 | 371 | 409 | 408 | 407 | 359 | 389 | 423 | 415 | 431 | 462 | 429 | 405 | 425 | 403 | 416 | 416 | 224 |
| a | a | 13330 | 176.9 | 35 | 7.1e-21 | 2.9e-20 | 19.54 | 3 | 201 | 296 | 354 | 327 | 329 | 331 | 321 | 379 | 345 | 353 | 319 | 363 | 331 | 374 | 354 | 385 | 355 | 391 | 443 | 386 | 412 | 433 | 367 | 387 | 385 | 404 | 455 | 421 | 419 | 440 | 413 | 397 | 419 | 377 | 429 | 235 |
| g | g | 6284 | 131.5 | 35 | 4.2e-13 | 1.7e-12 | 11.77 | 4 | 72 | 168 | 156 | 150 | 166 | 152 | 152 | 180 | 157 | 145 | 160 | 177 | 183 | 194 | 175 | 173 | 154 | 165 | 213 | 177 | 218 | 216 | 184 | 168 | 148 | 183 | 177 | 164 | 211 | 193 | 210 | 193 | 201 | 200 | 222 | 127 |
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