compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_vs_db_footprintDB-plants Program version 1.118 Quick mode Input files file1 $RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1.tf file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf Output files prefix $RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_vs_db_footprintDB-plants match_table_txt $RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_vs_db_footprintDB-plants.tab html_index $RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_vs_db_footprintDB-plants_index.html match_table_html $RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_vs_db_footprintDB-plants.html alignments_1ton $RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_vs_db_footprintDB-plants_alignments_1ton.tab alignments_1ton_html $RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1_vs_db_footprintDB-plants_alignments_1ton.html Matrices file1 1 matrices $RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_6nt_mkv2_m1/peak-motifs_oligos_6nt_mkv2_m1.tf file1 1 12 59 file2 2958 matrices $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf file2 1 8 5 file2 2 8 3 file2 3 8 5 file2 4 8 1 file2 5 8 2 file2 6 8 2 file2 7 8 6 file2 8 8 2 file2 9 8 8 file2 10 8 1 file2 11 8 4 ... 2948 more matrices Column content 1 id1 Identifier of the first matrix 2 id2 Identifier of the second matrix 3 name1 Name of the first matrix 4 name2 Name of the second matrix 5 cor Pearson coefficient of correlation between frequency matrices 6 Ncor Normalized correlation. Ncor = cor * Wr 7 w1 Width of the first matrix 8 w2 Width of the second matrix 9 w Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset) 10 W Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w 11 Wr Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W 12 wr1 Alignment length relative to the width of the first matrix. wr1 = w/w1 13 wr2 Alignment length relative to the width of the second matrix. wr2 = w/w2 14 strand "strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct; R=reverse) 15 offset shift of the second matrix relative to the first matrix (negative:left; positive: right)
| id1 | id2 | name1 | name2 | cor | Ncor | w1 | w2 | w | W | Wr | wr1 | wr2 | strand | offset |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| oligos_6nt_mkv2_m1 | KNAT3/M0855_1.02/CISBP | oligos_6nt_mkv2_m1 | KNAT3:M0855_1.02:CISBP | 0.709 | 0.591 | 12 | 10 | 10 | 12 | 0.8333 | 0.8333 | 1.0000 | R | 1 |
| oligos_6nt_mkv2_m1 | ARF13/EEAD0027/EEADannot | oligos_6nt_mkv2_m1 | ARF13:EEAD0027:EEADannot | 0.701 | 0.584 | 12 | 10 | 10 | 12 | 0.8333 | 0.8333 | 1.0000 | D | 0 |
| oligos_6nt_mkv2_m1 | ARF14/EEAD0028/EEADannot | oligos_6nt_mkv2_m1 | ARF14:EEAD0028:EEADannot | 0.854 | 0.569 | 12 | 8 | 8 | 12 | 0.6667 | 0.6667 | 1.0000 | D | 0 |
| oligos_6nt_mkv2_m1 | ARF25/EEAD0033/EEADannot | oligos_6nt_mkv2_m1 | ARF25:EEAD0033:EEADannot | 0.825 | 0.550 | 12 | 8 | 8 | 12 | 0.6667 | 0.6667 | 1.0000 | D | 0 |
| oligos_6nt_mkv2_m1 | ID1/ID1/Athamap | oligos_6nt_mkv2_m1 | ID1:ID1:Athamap | 0.708 | 0.544 | 12 | 11 | 10 | 13 | 0.7692 | 0.8333 | 0.9091 | R | -1 |
| oligos_6nt_mkv2_m1 | ARF10/EEAD0026/EEADannot | oligos_6nt_mkv2_m1 | ARF10:EEAD0026:EEADannot | 0.814 | 0.543 | 12 | 8 | 8 | 12 | 0.6667 | 0.6667 | 1.0000 | D | 0 |
| oligos_6nt_mkv2_m1 | Auxin/4ldx_A/3D-footprint | oligos_6nt_mkv2_m1 | Auxin:4ldx_A:3D-footprint | 0.719 | 0.539 | 12 | 9 | 9 | 12 | 0.7500 | 0.7500 | 1.0000 | D | 2 |
| oligos_6nt_mkv2_m1 | ARF39/EEAD0041/EEADannot | oligos_6nt_mkv2_m1 | ARF39:EEAD0041:EEADannot | 0.909 | 0.530 | 12 | 7 | 7 | 12 | 0.5833 | 0.5833 | 1.0000 | D | 1 |
| oligos_6nt_mkv2_m1 | ARF36/EEAD0039/EEADannot | oligos_6nt_mkv2_m1 | ARF36:EEAD0039:EEADannot | 0.849 | 0.522 | 12 | 9 | 8 | 13 | 0.6154 | 0.6667 | 0.8889 | D | -1 |
| oligos_6nt_mkv2_m1 | ARF25/MA1690.1/JASPAR | oligos_6nt_mkv2_m1 | ARF25:MA1690.1:JASPAR | 0.720 | 0.495 | 12 | 15 | 11 | 16 | 0.6875 | 0.9167 | 0.7333 | D | -4 |
| oligos_6nt_mkv2_m1 | ARF25/MA1690.2/JASPAR | oligos_6nt_mkv2_m1 | ARF25:MA1690.2:JASPAR | 0.771 | 0.463 | 12 | 12 | 9 | 15 | 0.6000 | 0.7500 | 0.7500 | D | -3 |
| oligos_6nt_mkv2_m1 | LEC1-A/UN0424.2/JASPAR | oligos_6nt_mkv2_m1 | LEC1-A:UN0424.2:JASPAR | 0.766 | 0.447 | 12 | 7 | 7 | 12 | 0.5833 | 0.5833 | 1.0000 | R | 4 |
| oligos_6nt_mkv2_m1 | Lysine-specific/6jnn_B/3D-footprint | oligos_6nt_mkv2_m1 | Lysine-specific:6jnn_B:3D-footprint | 0.816 | 0.408 | 12 | 6 | 6 | 12 | 0.5000 | 0.5000 | 1.0000 | D | 4 |
Host name rsat Job started 2025-05-21.034000 Job done 2025-05-21.034001 Seconds 1.23 user 1.23 system 0.05 cuser 0.21 ; csystem 0.02