/var/www/html/rsat/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_vs_db_footprintDB-plants.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_vs_db_footprintDB-plants
 Program version       	1.118
 Quick mode 
 Input files
	file2 	$RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf
	file1 	$RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2.tf
 Output files
	match_table_html	$RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_vs_db_footprintDB-plants.html
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_vs_db_footprintDB-plants_alignments_1ton.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_vs_db_footprintDB-plants_alignments_1ton.tab
	prefix       	$RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_vs_db_footprintDB-plants
	html_index   	$RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_vs_db_footprintDB-plants_index.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2_vs_db_footprintDB-plants.tab
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_6nt_mkv2_m2/peak-motifs_oligos_6nt_mkv2_m2.tf
		file1	1	10	55
	file2	2958 matrices	$RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf
		file2		1		8		5
		file2		2		8		3
		file2		3		8		5
		file2		4		8		1
		file2		5		8		2
		file2		6		8		2
		file2		7		8		6
		file2		8		8		2
		file2		9		8		8
		file2		10		8		1
		file2		11		8		4
		...	2948 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv2_m2 ZAT9/UN0417.1/JASPAR oligos_6nt_mkv2_m2 ZAT9:UN0417.1:JASPAR 0.865 0.692 10 8 8 10 0.8000 0.8000 1.0000 R 0
oligos_6nt_mkv2_m2 At3g60580.DAP/M0307/AthalianaCistrome oligos_6nt_mkv2_m2 At3g60580.DAP:M0307:AthalianaCistrome 0.865 0.692 10 8 8 10 0.8000 0.8000 1.0000 D 0
oligos_6nt_mkv2_m2 ChFLCrsat/EEAD0164/EEADannot oligos_6nt_mkv2_m2 ChFLCrsat:EEAD0164:EEADannot 0.736 0.614 10 12 10 12 0.8333 1.0000 0.8333 D -1
oligos_6nt_mkv2_m2 GT1/GT1/Athamap oligos_6nt_mkv2_m2 GT1:GT1:Athamap 0.727 0.606 10 12 10 12 0.8333 1.0000 0.8333 D -1
oligos_6nt_mkv2_m2 AtMYB87_II/AtMYB87_II/AthaMYB oligos_6nt_mkv2_m2 AtMYB87_II:AtMYB87_II:AthaMYB 0.746 0.597 10 8 8 10 0.8000 0.8000 1.0000 D 0
oligos_6nt_mkv2_m2 GTL1.DAP/M0771/AthalianaCistrome oligos_6nt_mkv2_m2 GTL1.DAP:M0771:AthalianaCistrome 0.723 0.591 10 10 9 11 0.8182 0.9000 0.9000 D 1
oligos_6nt_mkv2_m2 TRANSCRIPTION/1qn8_B/3D-footprint oligos_6nt_mkv2_m2 TRANSCRIPTION:1qn8_B:3D-footprint 0.735 0.588 10 8 8 10 0.8000 0.8000 1.0000 R 2
oligos_6nt_mkv2_m2 GTL1.ampDAP/M0769/AthalianaCistrome oligos_6nt_mkv2_m2 GTL1.ampDAP:M0769:AthalianaCistrome 0.713 0.583 10 10 9 11 0.8182 0.9000 0.9000 D 1
oligos_6nt_mkv2_m2 OsMSL08/MA2405.1/JASPAR oligos_6nt_mkv2_m2 OsMSL08:MA2405.1:JASPAR 0.957 0.574 10 6 6 10 0.6000 0.6000 1.0000 D 4
oligos_6nt_mkv2_m2 OS02G0104500/MA2345.1/JASPAR oligos_6nt_mkv2_m2 OS02G0104500:MA2345.1:JASPAR 0.956 0.574 10 6 6 10 0.6000 0.6000 1.0000 D 4
oligos_6nt_mkv2_m2 LOC_Os02g01380/M1284_1.02/CISBP oligos_6nt_mkv2_m2 LOC_Os02g01380:M1284_1.02:CISBP 0.787 0.525 10 10 8 12 0.6667 0.8000 0.8000 R 2
oligos_6nt_mkv2_m2 ZAT9/UN0417.2/JASPAR oligos_6nt_mkv2_m2 ZAT9:UN0417.2:JASPAR 0.872 0.523 10 6 6 10 0.6000 0.6000 1.0000 R 2
oligos_6nt_mkv2_m2 NAC062/MA1676.3/JASPAR oligos_6nt_mkv2_m2 NAC062:MA1676.3:JASPAR 0.732 0.512 10 7 7 10 0.7000 0.7000 1.0000 D 1
oligos_6nt_mkv2_m2 NAC062/MA1676.2/JASPAR oligos_6nt_mkv2_m2 NAC062:MA1676.2:JASPAR 0.710 0.507 10 14 10 14 0.7143 1.0000 0.7143 D -3
oligos_6nt_mkv2_m2 DF1/MA1366.2/JASPAR oligos_6nt_mkv2_m2 DF1:MA1366.2:JASPAR 0.788 0.501 10 8 7 11 0.6364 0.7000 0.8750 D 3
oligos_6nt_mkv2_m2 AT5G47660/MA1365.3/JASPAR oligos_6nt_mkv2_m2 AT5G47660:MA1365.3:JASPAR 0.713 0.499 10 7 7 10 0.7000 0.7000 1.0000 D 3
oligos_6nt_mkv2_m2 NAC096/MA2037.2/JASPAR oligos_6nt_mkv2_m2 NAC096:MA2037.2:JASPAR 0.712 0.498 10 7 7 10 0.7000 0.7000 1.0000 D 1
oligos_6nt_mkv2_m2 FUL-3/EEAD0142/EEADannot oligos_6nt_mkv2_m2 FUL-3:EEAD0142:EEADannot 0.722 0.481 10 15 10 15 0.6667 1.0000 0.6667 R -4
oligos_6nt_mkv2_m2 AtMYB84_II/AtMYB84_II/AthaMYB oligos_6nt_mkv2_m2 AtMYB84_II:AtMYB84_II:AthaMYB 0.778 0.467 10 6 6 10 0.6000 0.6000 1.0000 D 2
oligos_6nt_mkv2_m2 Probable/2lex_A/3D-footprint oligos_6nt_mkv2_m2 Probable:2lex_A:3D-footprint 0.777 0.466 10 6 6 10 0.6000 0.6000 1.0000 R 4
oligos_6nt_mkv2_m2 squamosa/MA0082.1/JASPAR oligos_6nt_mkv2_m2 squamosa:MA0082.1:JASPAR 0.745 0.447 10 14 9 15 0.6000 0.9000 0.6429 D -5
oligos_6nt_mkv2_m2 HMGB10/UN0863.1/JASPAR oligos_6nt_mkv2_m2 HMGB10:UN0863.1:JASPAR 0.740 0.444 10 6 6 10 0.6000 0.6000 1.0000 D 2
oligos_6nt_mkv2_m2 SEP1/MA0584.2/JASPAR oligos_6nt_mkv2_m2 SEP1:MA0584.2:JASPAR 0.780 0.416 10 13 8 15 0.5333 0.8000 0.6154 D -5
oligos_6nt_mkv2_m2 ChFLCmeme/EEAD0165/EEADannot oligos_6nt_mkv2_m2 ChFLCmeme:EEAD0165:EEADannot 0.728 0.409 10 15 9 16 0.5625 0.9000 0.6000 D -6 
 Host name	rsat
 Job started	2025-05-21.034001
 Job done	2025-05-21.034003
 Seconds	1.27
	user	1.27
	system	0.04
	cuser	0.21
;	csystem	0.03