/var/www/html/rsat/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_6nt_mkv2_m3/peak-motifs_oligos_6nt_mkv2_m3_vs_db_footprintDB-plants.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_6nt_mkv2_m3/peak-motifs_oligos_6nt_mkv2_m3.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_6nt_mkv2_m3/peak-motifs_oligos_6nt_mkv2_m3_vs_db_footprintDB-plants
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_6nt_mkv2_m3/peak-motifs_oligos_6nt_mkv2_m3.tf
	file2 	$RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf
 Output files
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_6nt_mkv2_m3/peak-motifs_oligos_6nt_mkv2_m3_vs_db_footprintDB-plants_alignments_1ton.tab
	match_table_html	$RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_6nt_mkv2_m3/peak-motifs_oligos_6nt_mkv2_m3_vs_db_footprintDB-plants.html
	html_index   	$RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_6nt_mkv2_m3/peak-motifs_oligos_6nt_mkv2_m3_vs_db_footprintDB-plants_index.html
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_6nt_mkv2_m3/peak-motifs_oligos_6nt_mkv2_m3_vs_db_footprintDB-plants.tab
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_6nt_mkv2_m3/peak-motifs_oligos_6nt_mkv2_m3_vs_db_footprintDB-plants_alignments_1ton.html
	prefix       	$RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_6nt_mkv2_m3/peak-motifs_oligos_6nt_mkv2_m3_vs_db_footprintDB-plants
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_6nt_mkv2_m3/peak-motifs_oligos_6nt_mkv2_m3.tf
		file1	1	10	52
	file2	2958 matrices	$RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf
		file2		1		8		5
		file2		2		8		3
		file2		3		8		5
		file2		4		8		1
		file2		5		8		2
		file2		6		8		2
		file2		7		8		6
		file2		8		8		2
		file2		9		8		8
		file2		10		8		1
		file2		11		8		4
		...	2948 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_6nt_mkv2_m3 PK29550.1/M1314_1.02/CISBP oligos_6nt_mkv2_m3 PK29550.1:M1314_1.02:CISBP 0.728 0.728 10 10 10 10 1.0000 1.0000 1.0000 D 0
oligos_6nt_mkv2_m3 LOC_Os08g06110/M1365_1.02/CISBP oligos_6nt_mkv2_m3 LOC_Os08g06110:M1365_1.02:CISBP 0.769 0.692 10 9 9 10 0.9000 0.9000 1.0000 D 1
oligos_6nt_mkv2_m3 AT5G08520/M1339_1.02/CISBP oligos_6nt_mkv2_m3 AT5G08520:M1339_1.02:CISBP 0.748 0.673 10 9 9 10 0.9000 0.9000 1.0000 D 1
oligos_6nt_mkv2_m3 AT4G09450/UN0393.1/JASPAR oligos_6nt_mkv2_m3 AT4G09450:UN0393.1:JASPAR 0.727 0.655 10 9 9 10 0.9000 0.9000 1.0000 R 1
oligos_6nt_mkv2_m3 CCA1/CCA1_2/ArabidopsisPBM oligos_6nt_mkv2_m3 CCA1:CCA1_2:ArabidopsisPBM 0.778 0.637 10 10 9 11 0.8182 0.9000 0.9000 D 1
oligos_6nt_mkv2_m3 fgenesh1_pg.scaffold_70000111/M1388_1.02/CISBP oligos_6nt_mkv2_m3 fgenesh1_pg.scaffold_70000111:M1388_1.02:CISBP 0.702 0.632 10 9 9 10 0.9000 0.9000 1.0000 D 1
oligos_6nt_mkv2_m3 PK02532.1/M1303_1.02/CISBP oligos_6nt_mkv2_m3 PK02532.1:M1303_1.02:CISBP 0.701 0.631 10 9 9 10 0.9000 0.9000 1.0000 D 1
oligos_6nt_mkv2_m3 PK27213.1/M1312_1.02/CISBP oligos_6nt_mkv2_m3 PK27213.1:M1312_1.02:CISBP 0.757 0.619 10 10 9 11 0.8182 0.9000 0.9000 D -1
oligos_6nt_mkv2_m3 estExt_fgenesh1_pg.C_Chr_03.00010215/M1395_1.02/CISBP oligos_6nt_mkv2_m3 estExt_fgenesh1_pg.C_Chr_03.00010215:M1395_1.02:CISBP 0.744 0.609 10 10 9 11 0.8182 0.9000 0.9000 D 1
oligos_6nt_mkv2_m3 PK08316.1/M1306_1.02/CISBP oligos_6nt_mkv2_m3 PK08316.1:M1306_1.02:CISBP 0.738 0.604 10 10 9 11 0.8182 0.9000 0.9000 R 1
oligos_6nt_mkv2_m3 PK00738.1/M1302_1.02/CISBP oligos_6nt_mkv2_m3 PK00738.1:M1302_1.02:CISBP 0.725 0.593 10 10 9 11 0.8182 0.9000 0.9000 D -1
oligos_6nt_mkv2_m3 ARR14/M1324_1.02/CISBP oligos_6nt_mkv2_m3 ARR14:M1324_1.02:CISBP 0.711 0.582 10 10 9 11 0.8182 0.9000 0.9000 R 1
oligos_6nt_mkv2_m3 e_gw1.362.4.1/M1384_1.02/CISBP oligos_6nt_mkv2_m3 e_gw1.362.4.1:M1384_1.02:CISBP 0.705 0.577 10 10 9 11 0.8182 0.9000 0.9000 R 1
oligos_6nt_mkv2_m3 AT1G19000/M1318_1.02/CISBP oligos_6nt_mkv2_m3 AT1G19000:M1318_1.02:CISBP 0.705 0.577 10 10 9 11 0.8182 0.9000 0.9000 D -1
oligos_6nt_mkv2_m3 ARR1/M1327_1.02/CISBP oligos_6nt_mkv2_m3 ARR1:M1327_1.02:CISBP 0.701 0.574 10 10 9 11 0.8182 0.9000 0.9000 R 1
oligos_6nt_mkv2_m3 ARR18/M1345_1.02/CISBP oligos_6nt_mkv2_m3 ARR18:M1345_1.02:CISBP 0.735 0.566 10 13 10 13 0.7692 1.0000 0.7692 D -2
oligos_6nt_mkv2_m3 ARR18/MA0948.1/JASPAR oligos_6nt_mkv2_m3 ARR18:MA0948.1:JASPAR 0.735 0.565 10 13 10 13 0.7692 1.0000 0.7692 D -2
oligos_6nt_mkv2_m3 estExt_fgenesh1_pg.C_Chr_16.00010090/M1397_1.02/CISBP oligos_6nt_mkv2_m3 estExt_fgenesh1_pg.C_Chr_16.00010090:M1397_1.02:CISBP 0.701 0.561 10 8 8 10 0.8000 0.8000 1.0000 R 2
oligos_6nt_mkv2_m3 OsCCA1/MA2349.1/JASPAR oligos_6nt_mkv2_m3 OsCCA1:MA2349.1:JASPAR 0.778 0.545 10 7 7 10 0.7000 0.7000 1.0000 R 2
oligos_6nt_mkv2_m3 EPR1/M1317_1.02/CISBP oligos_6nt_mkv2_m3 EPR1:M1317_1.02:CISBP 0.740 0.538 10 9 8 11 0.7273 0.8000 0.8889 D 2
oligos_6nt_mkv2_m3 ARR18/MA0948.2/JASPAR oligos_6nt_mkv2_m3 ARR18:MA0948.2:JASPAR 0.754 0.528 10 7 7 10 0.7000 0.7000 1.0000 D 2
oligos_6nt_mkv2_m3 TIFY2B/M0762_1.02/CISBP oligos_6nt_mkv2_m3 TIFY2B:M0762_1.02:CISBP 0.728 0.510 10 7 7 10 0.7000 0.7000 1.0000 D 2
oligos_6nt_mkv2_m3 TIFY2A/M0760_1.02/CISBP oligos_6nt_mkv2_m3 TIFY2A:M0760_1.02:CISBP 0.727 0.509 10 7 7 10 0.7000 0.7000 1.0000 D 1
oligos_6nt_mkv2_m3 fgenesh1_pg.C_Chr_07.0001000042/M0808_1.02/CISBP oligos_6nt_mkv2_m3 fgenesh1_pg.C_Chr_07.0001000042:M0808_1.02:CISBP 0.702 0.468 10 10 8 12 0.6667 0.8000 0.8000 R -2
oligos_6nt_mkv2_m3 AtMYB30_II/AtMYB30_II/AthaMYB oligos_6nt_mkv2_m3 AtMYB30_II:AtMYB30_II:AthaMYB 0.722 0.459 10 8 7 11 0.6364 0.7000 0.8750 D 3
oligos_6nt_mkv2_m3 AtMYB94_II/AtMYB94_II/AthaMYB oligos_6nt_mkv2_m3 AtMYB94_II:AtMYB94_II:AthaMYB 0.705 0.449 10 8 7 11 0.6364 0.7000 0.8750 D 3
oligos_6nt_mkv2_m3 AT4G09450/MA2103.1/JASPAR oligos_6nt_mkv2_m3 AT4G09450:MA2103.1:JASPAR 0.747 0.448 10 6 6 10 0.6000 0.6000 1.0000 R 2
oligos_6nt_mkv2_m3 AtMYB31_II/AtMYB31_II/AthaMYB oligos_6nt_mkv2_m3 AtMYB31_II:AtMYB31_II:AthaMYB 0.701 0.446 10 8 7 11 0.6364 0.7000 0.8750 D 3
oligos_6nt_mkv2_m3 NID1/MA1793.2/JASPAR oligos_6nt_mkv2_m3 NID1:MA1793.2:JASPAR 0.735 0.441 10 6 6 10 0.6000 0.6000 1.0000 R 2
oligos_6nt_mkv2_m3 ARR1/MA0945.2/JASPAR oligos_6nt_mkv2_m3 ARR1:MA0945.2:JASPAR 0.732 0.439 10 6 6 10 0.6000 0.6000 1.0000 R 2
oligos_6nt_mkv2_m3 OsGATA16/EEAD0151/EEADannot oligos_6nt_mkv2_m3 OsGATA16:EEAD0151:EEADannot 0.704 0.423 10 6 6 10 0.6000 0.6000 1.0000 R 2
oligos_6nt_mkv2_m3 ChFLCrsat/EEAD0164/EEADannot oligos_6nt_mkv2_m3 ChFLCrsat:EEAD0164:EEADannot 0.704 0.402 10 12 8 14 0.5714 0.8000 0.6667 D 2 
 Host name	rsat
 Job started	2025-05-21.034003
 Job done	2025-05-21.034005
 Seconds	1.3
	user	1.3
	system	0.03
	cuser	0.23
;	csystem	0.03