/var/www/html/rsat/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2_vs_db_footprintDB-plants.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2_vs_db_footprintDB-plants
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2.tf
	file2 	$RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf
 Output files
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2_vs_db_footprintDB-plants.tab
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2_vs_db_footprintDB-plants_alignments_1ton.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2_vs_db_footprintDB-plants_alignments_1ton.tab
	match_table_html	$RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2_vs_db_footprintDB-plants.html
	prefix       	$RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2_vs_db_footprintDB-plants
	html_index   	$RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2_vs_db_footprintDB-plants_index.html
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_7nt_mkv2_m2/peak-motifs_oligos_7nt_mkv2_m2.tf
		file1	1	11	101
	file2	2958 matrices	$RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf
		file2		1		8		5
		file2		2		8		3
		file2		3		8		5
		file2		4		8		1
		file2		5		8		2
		file2		6		8		2
		file2		7		8		6
		file2		8		8		2
		file2		9		8		8
		file2		10		8		1
		file2		11		8		4
		...	2948 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_7nt_mkv2_m2 Zm00001d044785/MA1827.1/JASPAR oligos_7nt_mkv2_m2 Zm00001d044785:MA1827.1:JASPAR 0.783 0.783 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m2 Zm00001d044409/MA1825.1/JASPAR oligos_7nt_mkv2_m2 Zm00001d044409:MA1825.1:JASPAR 0.731 0.731 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m2 YAB4/MA1186.2/JASPAR oligos_7nt_mkv2_m2 YAB4:MA1186.2:JASPAR 0.708 0.708 11 11 11 11 1.0000 1.0000 1.0000 D 0
oligos_7nt_mkv2_m2 ONAC127/UN0430.1/JASPAR oligos_7nt_mkv2_m2 ONAC127:UN0430.1:JASPAR 0.878 0.675 11 12 10 13 0.7692 0.9091 0.8333 R 1
oligos_7nt_mkv2_m2 ONAC127/UN0430.2/JASPAR oligos_7nt_mkv2_m2 ONAC127:UN0430.2:JASPAR 0.919 0.668 11 8 8 11 0.7273 0.7273 1.0000 R 3
oligos_7nt_mkv2_m2 AT5G04760/M1336_1.02/CISBP oligos_7nt_mkv2_m2 AT5G04760:M1336_1.02:CISBP 0.734 0.667 11 10 10 11 0.9091 0.9091 1.0000 R 1
oligos_7nt_mkv2_m2 e_gw1.170.52.1/M0659_1.02/CISBP oligos_7nt_mkv2_m2 e_gw1.170.52.1:M0659_1.02:CISBP 0.714 0.649 11 10 10 11 0.9091 0.9091 1.0000 R 0
oligos_7nt_mkv2_m2 PHYPADRAFT_140773/MA0987.1/JASPAR oligos_7nt_mkv2_m2 PHYPADRAFT_140773:MA0987.1:JASPAR 0.713 0.648 11 10 10 11 0.9091 0.9091 1.0000 R 0
oligos_7nt_mkv2_m2 DOF1.8/MA0981.1/JASPAR oligos_7nt_mkv2_m2 DOF1.8:MA0981.1:JASPAR 0.709 0.645 11 10 10 11 0.9091 0.9091 1.0000 R 0
oligos_7nt_mkv2_m2 AT1G64620/M0647_1.02/CISBP oligos_7nt_mkv2_m2 AT1G64620:M0647_1.02:CISBP 0.708 0.644 11 10 10 11 0.9091 0.9091 1.0000 R 0
oligos_7nt_mkv2_m2 PHYPADRAFT_38837/MA1022.1/JASPAR oligos_7nt_mkv2_m2 PHYPADRAFT_38837:MA1022.1:JASPAR 0.707 0.642 11 10 10 11 0.9091 0.9091 1.0000 R 0
oligos_7nt_mkv2_m2 gw1.385.26.1/M0663_1.02/CISBP oligos_7nt_mkv2_m2 gw1.385.26.1:M0663_1.02:CISBP 0.705 0.641 11 10 10 11 0.9091 0.9091 1.0000 R 0
oligos_7nt_mkv2_m2 TAGL1/UN0426.1/JASPAR oligos_7nt_mkv2_m2 TAGL1:UN0426.1:JASPAR 0.753 0.637 11 13 11 13 0.8462 1.0000 0.8462 R 0
oligos_7nt_mkv2_m2 TAGL1/UN0426.2/JASPAR oligos_7nt_mkv2_m2 TAGL1:UN0426.2:JASPAR 0.749 0.613 11 9 9 11 0.8182 0.8182 1.0000 R 2
oligos_7nt_mkv2_m2 SRM1/MA1681.2/JASPAR oligos_7nt_mkv2_m2 SRM1:MA1681.2:JASPAR 0.743 0.608 11 9 9 11 0.8182 0.8182 1.0000 R 1
oligos_7nt_mkv2_m2 KHZ1/UN0404.2/JASPAR oligos_7nt_mkv2_m2 KHZ1:UN0404.2:JASPAR 0.731 0.598 11 9 9 11 0.8182 0.8182 1.0000 R 0
oligos_7nt_mkv2_m2 C3H36/UN0844.1/JASPAR oligos_7nt_mkv2_m2 C3H36:UN0844.1:JASPAR 0.731 0.598 11 9 9 11 0.8182 0.8182 1.0000 R 0
oligos_7nt_mkv2_m2 VRN1/EEAD0006/EEADannot oligos_7nt_mkv2_m2 VRN1:EEAD0006:EEADannot 0.792 0.594 11 10 9 12 0.7500 0.8182 0.9000 R 2
oligos_7nt_mkv2_m2 e_gw1.392.16.1/M0660_1.02/CISBP oligos_7nt_mkv2_m2 e_gw1.392.16.1:M0660_1.02:CISBP 0.721 0.590 11 9 9 11 0.8182 0.8182 1.0000 R 1
oligos_7nt_mkv2_m2 PHYPADRAFT_153324/MA0989.1/JASPAR oligos_7nt_mkv2_m2 PHYPADRAFT_153324:MA0989.1:JASPAR 0.718 0.588 11 9 9 11 0.8182 0.8182 1.0000 R 1
oligos_7nt_mkv2_m2 SRM1/MA1681.1/JASPAR oligos_7nt_mkv2_m2 SRM1:MA1681.1:JASPAR 0.744 0.585 11 14 11 14 0.7857 1.0000 0.7857 R -1
oligos_7nt_mkv2_m2 At3g11280/MA1188.1/JASPAR oligos_7nt_mkv2_m2 At3g11280:MA1188.1:JASPAR 0.719 0.565 11 14 11 14 0.7857 1.0000 0.7857 D 0
oligos_7nt_mkv2_m2 AT3G12130.ampDAP/M0341/AthalianaCistrome oligos_7nt_mkv2_m2 AT3G12130.ampDAP:M0341:AthalianaCistrome 0.708 0.556 11 14 11 14 0.7857 1.0000 0.7857 R -1
oligos_7nt_mkv2_m2 KHZ1/UN0404.1/JASPAR oligos_7nt_mkv2_m2 KHZ1:UN0404.1:JASPAR 0.708 0.556 11 14 11 14 0.7857 1.0000 0.7857 R -1
oligos_7nt_mkv2_m2 DOF4.2/MA1273.2/JASPAR oligos_7nt_mkv2_m2 DOF4.2:MA1273.2:JASPAR 0.799 0.553 11 11 9 13 0.6923 0.8182 0.8182 R -2
oligos_7nt_mkv2_m2 DOF5.7/MA0984.1/JASPAR oligos_7nt_mkv2_m2 DOF5.7:MA0984.1:JASPAR 0.758 0.551 11 8 8 11 0.7273 0.7273 1.0000 R 0
oligos_7nt_mkv2_m2 Zm00001d027846/MA1823.2/JASPAR oligos_7nt_mkv2_m2 Zm00001d027846:MA1823.2:JASPAR 0.919 0.536 11 8 7 12 0.5833 0.6364 0.8750 R 4
oligos_7nt_mkv2_m2 NAC69/MA2018.2/JASPAR oligos_7nt_mkv2_m2 NAC69:MA2018.2:JASPAR 0.726 0.528 11 8 8 11 0.7273 0.7273 1.0000 R 0
oligos_7nt_mkv2_m2 DOF2.5/MA0977.1/JASPAR oligos_7nt_mkv2_m2 DOF2.5:MA0977.1:JASPAR 0.721 0.524 11 8 8 11 0.7273 0.7273 1.0000 R 0
oligos_7nt_mkv2_m2 At5g05790/MA1196.1/JASPAR oligos_7nt_mkv2_m2 At5g05790:MA1196.1:JASPAR 0.713 0.523 11 15 11 15 0.7333 1.0000 0.7333 D 0
oligos_7nt_mkv2_m2 NFYB4.DAP/M0353/AthalianaCistrome oligos_7nt_mkv2_m2 NFYB4.DAP:M0353:AthalianaCistrome 0.818 0.520 11 7 7 11 0.6364 0.6364 1.0000 R 3
oligos_7nt_mkv2_m2 At1g49010/MA1186.1/JASPAR oligos_7nt_mkv2_m2 At1g49010:MA1186.1:JASPAR 0.708 0.519 11 15 11 15 0.7333 1.0000 0.7333 D -3
oligos_7nt_mkv2_m2 Zm00001d044785/MA1827.2/JASPAR oligos_7nt_mkv2_m2 Zm00001d044785:MA1827.2:JASPAR 0.813 0.518 11 7 7 11 0.6364 0.6364 1.0000 D 2
oligos_7nt_mkv2_m2 At2g41835.DAP/M0332/AthalianaCistrome oligos_7nt_mkv2_m2 At2g41835.DAP:M0332:AthalianaCistrome 0.813 0.517 11 7 7 11 0.6364 0.6364 1.0000 R 4
oligos_7nt_mkv2_m2 SAP11/UN0835.1/JASPAR oligos_7nt_mkv2_m2 SAP11:UN0835.1:JASPAR 0.813 0.517 11 7 7 11 0.6364 0.6364 1.0000 D 4
oligos_7nt_mkv2_m2 e_gw1.149.93.1/M0658_1.02/CISBP oligos_7nt_mkv2_m2 e_gw1.149.93.1:M0658_1.02:CISBP 0.711 0.517 11 8 8 11 0.7273 0.7273 1.0000 R 2
oligos_7nt_mkv2_m2 Zm00001d024644/MA2106.1/JASPAR oligos_7nt_mkv2_m2 Zm00001d024644:MA2106.1:JASPAR 0.708 0.515 11 8 8 11 0.7273 0.7273 1.0000 D 2
oligos_7nt_mkv2_m2 AT1G47655.ampDAP/M0271/AthalianaCistrome oligos_7nt_mkv2_m2 AT1G47655.ampDAP:M0271:AthalianaCistrome 0.701 0.514 11 15 11 15 0.7333 1.0000 0.7333 D -4
oligos_7nt_mkv2_m2 At1g49010.ampDAP/M0601/AthalianaCistrome oligos_7nt_mkv2_m2 At1g49010.ampDAP:M0601:AthalianaCistrome 0.701 0.514 11 15 11 15 0.7333 1.0000 0.7333 R 0
oligos_7nt_mkv2_m2 DOF1.7/MA1277.2/JASPAR oligos_7nt_mkv2_m2 DOF1.7:MA1277.2:JASPAR 0.711 0.492 11 11 9 13 0.6923 0.8182 0.8182 R -2
oligos_7nt_mkv2_m2 Zm00001d027846/MA1823.1/JASPAR oligos_7nt_mkv2_m2 Zm00001d027846:MA1823.1:JASPAR 0.760 0.489 11 12 9 14 0.6429 0.8182 0.7500 R 2
oligos_7nt_mkv2_m2 At5g08520.ampDAP/M0602/AthalianaCistrome oligos_7nt_mkv2_m2 At5g08520.ampDAP:M0602:AthalianaCistrome 0.706 0.489 11 11 9 13 0.6923 0.8182 0.8182 D 2
oligos_7nt_mkv2_m2 TMO6/M0654_1.02/CISBP oligos_7nt_mkv2_m2 TMO6:M0654_1.02:CISBP 0.766 0.487 11 7 7 11 0.6364 0.6364 1.0000 R 3
oligos_7nt_mkv2_m2 DOF5.3/MA1071.1/JASPAR oligos_7nt_mkv2_m2 DOF5.3:MA1071.1:JASPAR 0.766 0.487 11 7 7 11 0.6364 0.6364 1.0000 R 3
oligos_7nt_mkv2_m2 AT5G04760/MA2031.2/JASPAR oligos_7nt_mkv2_m2 AT5G04760:MA2031.2:JASPAR 0.749 0.476 11 7 7 11 0.6364 0.6364 1.0000 D 3
oligos_7nt_mkv2_m2 DOF4.7/MA2380.1/JASPAR oligos_7nt_mkv2_m2 DOF4.7:MA2380.1:JASPAR 0.701 0.467 11 9 8 12 0.6667 0.7273 0.8889 D -1
oligos_7nt_mkv2_m2 CDF2/MA0973.2/JASPAR oligos_7nt_mkv2_m2 CDF2:MA0973.2:JASPAR 0.724 0.461 11 7 7 11 0.6364 0.6364 1.0000 R 1
oligos_7nt_mkv2_m2 dof4.2/MA1273.1/JASPAR oligos_7nt_mkv2_m2 dof4.2:MA1273.1:JASPAR 0.795 0.460 11 19 11 19 0.5789 1.0000 0.5789 R -5
oligos_7nt_mkv2_m2 NAC078/MA1677.2/JASPAR oligos_7nt_mkv2_m2 NAC078:MA1677.2:JASPAR 0.910 0.455 11 7 6 12 0.5000 0.5455 0.8571 R 5
oligos_7nt_mkv2_m2 NAC053/MA2049.2/JASPAR oligos_7nt_mkv2_m2 NAC053:MA2049.2:JASPAR 0.910 0.455 11 7 6 12 0.5000 0.5455 0.8571 R 5
oligos_7nt_mkv2_m2 DOF5.4/MA1280.2/JASPAR oligos_7nt_mkv2_m2 DOF5.4:MA1280.2:JASPAR 0.709 0.451 11 7 7 11 0.6364 0.6364 1.0000 R 1
oligos_7nt_mkv2_m2 ATDOF2.4/M0648_1.02/CISBP oligos_7nt_mkv2_m2 ATDOF2.4:M0648_1.02:CISBP 0.708 0.450 11 7 7 11 0.6364 0.6364 1.0000 R 2
oligos_7nt_mkv2_m2 DOF2.4/MA0982.1/JASPAR oligos_7nt_mkv2_m2 DOF2.4:MA0982.1:JASPAR 0.706 0.450 11 7 7 11 0.6364 0.6364 1.0000 R 2
oligos_7nt_mkv2_m2 DOF3.5/MA1276.2/JASPAR oligos_7nt_mkv2_m2 DOF3.5:MA1276.2:JASPAR 0.706 0.449 11 7 7 11 0.6364 0.6364 1.0000 R 2
oligos_7nt_mkv2_m2 NAC004/MA2043.2/JASPAR oligos_7nt_mkv2_m2 NAC004:MA2043.2:JASPAR 0.893 0.447 11 7 6 12 0.5000 0.5455 0.8571 R 5
oligos_7nt_mkv2_m2 C3H67/UN0851.1/JASPAR oligos_7nt_mkv2_m2 C3H67:UN0851.1:JASPAR 0.716 0.441 11 10 8 13 0.6154 0.7273 0.8000 R -2
oligos_7nt_mkv2_m2 At3g11280.ampDAP/M0619/AthalianaCistrome oligos_7nt_mkv2_m2 At3g11280.ampDAP:M0619:AthalianaCistrome 0.714 0.436 11 18 11 18 0.6111 1.0000 0.6111 D -3
oligos_7nt_mkv2_m2 Dof3/MA0021.1/JASPAR oligos_7nt_mkv2_m2 Dof3:MA0021.1:JASPAR 0.789 0.431 11 6 6 11 0.5455 0.5455 1.0000 R 1
oligos_7nt_mkv2_m2 Dof2/MA0020.1/JASPAR oligos_7nt_mkv2_m2 Dof2:MA0020.1:JASPAR 0.787 0.429 11 6 6 11 0.5455 0.5455 1.0000 R 1
oligos_7nt_mkv2_m2 ERF026/UN0832.1/JASPAR oligos_7nt_mkv2_m2 ERF026:UN0832.1:JASPAR 0.783 0.427 11 6 6 11 0.5455 0.5455 1.0000 R 5
oligos_7nt_mkv2_m2 At5g08520/MA1399.1/JASPAR oligos_7nt_mkv2_m2 At5g08520:MA1399.1:JASPAR 0.711 0.426 11 13 9 15 0.6000 0.8182 0.6923 R 2
oligos_7nt_mkv2_m2 NTL8/MA1678.3/JASPAR oligos_7nt_mkv2_m2 NTL8:MA1678.3:JASPAR 0.725 0.423 11 8 7 12 0.5833 0.6364 0.8750 R 4
oligos_7nt_mkv2_m2 Zm00001d044409/MA1825.2/JASPAR oligos_7nt_mkv2_m2 Zm00001d044409:MA1825.2:JASPAR 0.767 0.418 11 6 6 11 0.5455 0.5455 1.0000 D 3
oligos_7nt_mkv2_m2 DOF2.2/MA1272.3/JASPAR oligos_7nt_mkv2_m2 DOF2.2:MA1272.3:JASPAR 0.766 0.418 11 6 6 11 0.5455 0.5455 1.0000 R 2
oligos_7nt_mkv2_m2 HB-1/M0841_1.02/CISBP oligos_7nt_mkv2_m2 HB-1:M0841_1.02:CISBP 0.705 0.411 11 8 7 12 0.5833 0.6364 0.8750 D 4
oligos_7nt_mkv2_m2 NLP7/MA1794.2/JASPAR oligos_7nt_mkv2_m2 NLP7:MA1794.2:JASPAR 0.705 0.411 11 8 7 12 0.5833 0.6364 0.8750 D -1
oligos_7nt_mkv2_m2 ARF1/ARF1/Athamap oligos_7nt_mkv2_m2 ARF1:ARF1:Athamap 0.712 0.407 11 11 8 14 0.5714 0.7273 0.7273 D 3
oligos_7nt_mkv2_m2 ANAC057/UN0346.1/JASPAR oligos_7nt_mkv2_m2 ANAC057:UN0346.1:JASPAR 0.705 0.403 11 11 8 14 0.5714 0.7273 0.7273 R 3
oligos_7nt_mkv2_m2 NAC004/MA2043.1/JASPAR oligos_7nt_mkv2_m2 NAC004:MA2043.1:JASPAR 0.701 0.401 11 11 8 14 0.5714 0.7273 0.7273 R 3 
 Host name	rsat
 Job started	2025-05-21.034007
 Job done	2025-05-21.034008
 Seconds	1.26
	user	1.26
	system	0.08
	cuser	0.23
;	csystem	0.03