/var/www/html/rsat/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_8nt_mkv2_m2/peak-motifs_oligos_8nt_mkv2_m2_vs_db_footprintDB-plants.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_8nt_mkv2_m2/peak-motifs_oligos_8nt_mkv2_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_8nt_mkv2_m2/peak-motifs_oligos_8nt_mkv2_m2_vs_db_footprintDB-plants
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_8nt_mkv2_m2/peak-motifs_oligos_8nt_mkv2_m2.tf
	file2 	$RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf
 Output files
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_8nt_mkv2_m2/peak-motifs_oligos_8nt_mkv2_m2_vs_db_footprintDB-plants_alignments_1ton.html
	prefix       	$RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_8nt_mkv2_m2/peak-motifs_oligos_8nt_mkv2_m2_vs_db_footprintDB-plants
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_8nt_mkv2_m2/peak-motifs_oligos_8nt_mkv2_m2_vs_db_footprintDB-plants_alignments_1ton.tab
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_8nt_mkv2_m2/peak-motifs_oligos_8nt_mkv2_m2_vs_db_footprintDB-plants.tab
	html_index   	$RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_8nt_mkv2_m2/peak-motifs_oligos_8nt_mkv2_m2_vs_db_footprintDB-plants_index.html
	match_table_html	$RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_8nt_mkv2_m2/peak-motifs_oligos_8nt_mkv2_m2_vs_db_footprintDB-plants.html
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_8nt_mkv2_m2/peak-motifs_oligos_8nt_mkv2_m2.tf
		file1	1	12	49
	file2	2958 matrices	$RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf
		file2		1		8		5
		file2		2		8		3
		file2		3		8		5
		file2		4		8		1
		file2		5		8		2
		file2		6		8		2
		file2		7		8		6
		file2		8		8		2
		file2		9		8		8
		file2		10		8		1
		file2		11		8		4
		...	2948 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_8nt_mkv2_m2 Zm00001d044785/MA1827.1/JASPAR oligos_8nt_mkv2_m2 Zm00001d044785:MA1827.1:JASPAR 0.730 0.669 12 11 11 12 0.9167 0.9167 1.0000 R 0
oligos_8nt_mkv2_m2 DOF4.2/MA1273.2/JASPAR oligos_8nt_mkv2_m2 DOF4.2:MA1273.2:JASPAR 0.828 0.637 12 11 10 13 0.7692 0.8333 0.9091 D 2
oligos_8nt_mkv2_m2 NAC69/MA2018.1/JASPAR oligos_8nt_mkv2_m2 NAC69:MA2018.1:JASPAR 0.730 0.618 12 12 11 13 0.8462 0.9167 0.9167 D 1
oligos_8nt_mkv2_m2 NLP7/MA1794.1/JASPAR oligos_8nt_mkv2_m2 NLP7:MA1794.1:JASPAR 0.757 0.606 12 15 12 15 0.8000 1.0000 0.8000 R -1
oligos_8nt_mkv2_m2 NLP7.DAP/M0729/AthalianaCistrome oligos_8nt_mkv2_m2 NLP7.DAP:M0729:AthalianaCistrome 0.757 0.606 12 15 12 15 0.8000 1.0000 0.8000 R -1
oligos_8nt_mkv2_m2 AT3G12130.ampDAP/M0341/AthalianaCistrome oligos_8nt_mkv2_m2 AT3G12130.ampDAP:M0341:AthalianaCistrome 0.705 0.605 12 14 12 14 0.8571 1.0000 0.8571 D -2
oligos_8nt_mkv2_m2 KHZ1/UN0404.1/JASPAR oligos_8nt_mkv2_m2 KHZ1:UN0404.1:JASPAR 0.705 0.604 12 14 12 14 0.8571 1.0000 0.8571 D -2
oligos_8nt_mkv2_m2 AT5G04760/M1336_1.02/CISBP oligos_8nt_mkv2_m2 AT5G04760:M1336_1.02:CISBP 0.715 0.596 12 10 10 12 0.8333 0.8333 1.0000 D 0
oligos_8nt_mkv2_m2 TAGL1/UN0426.2/JASPAR oligos_8nt_mkv2_m2 TAGL1:UN0426.2:JASPAR 0.788 0.591 12 9 9 12 0.7500 0.7500 1.0000 D 0
oligos_8nt_mkv2_m2 e_gw1.170.52.1/M0659_1.02/CISBP oligos_8nt_mkv2_m2 e_gw1.170.52.1:M0659_1.02:CISBP 0.707 0.589 12 10 10 12 0.8333 0.8333 1.0000 D 1
oligos_8nt_mkv2_m2 PHYPADRAFT_140773/MA0987.1/JASPAR oligos_8nt_mkv2_m2 PHYPADRAFT_140773:MA0987.1:JASPAR 0.706 0.589 12 10 10 12 0.8333 0.8333 1.0000 D 1
oligos_8nt_mkv2_m2 DOF1.8/MA0981.1/JASPAR oligos_8nt_mkv2_m2 DOF1.8:MA0981.1:JASPAR 0.701 0.584 12 10 10 12 0.8333 0.8333 1.0000 D 1
oligos_8nt_mkv2_m2 TAGL1/UN0426.1/JASPAR oligos_8nt_mkv2_m2 TAGL1:UN0426.1:JASPAR 0.736 0.578 12 13 11 14 0.7857 0.9167 0.8462 D -2
oligos_8nt_mkv2_m2 ONAC127/UN0430.2/JASPAR oligos_8nt_mkv2_m2 ONAC127:UN0430.2:JASPAR 0.865 0.577 12 8 8 12 0.6667 0.6667 1.0000 D 0
oligos_8nt_mkv2_m2 VRN1/EEAD0006/EEADannot oligos_8nt_mkv2_m2 VRN1:EEAD0006:EEADannot 0.811 0.561 12 10 9 13 0.6923 0.7500 0.9000 D -1
oligos_8nt_mkv2_m2 ONAC127/UN0430.1/JASPAR oligos_8nt_mkv2_m2 ONAC127:UN0430.1:JASPAR 0.778 0.556 12 12 10 14 0.7143 0.8333 0.8333 D -2
oligos_8nt_mkv2_m2 WRKY50/MA1317.2/JASPAR oligos_8nt_mkv2_m2 WRKY50:MA1317.2:JASPAR 0.739 0.555 12 9 9 12 0.7500 0.7500 1.0000 R 3
oligos_8nt_mkv2_m2 KHZ1/UN0404.2/JASPAR oligos_8nt_mkv2_m2 KHZ1:UN0404.2:JASPAR 0.717 0.538 12 9 9 12 0.7500 0.7500 1.0000 D 2
oligos_8nt_mkv2_m2 C3H36/UN0844.1/JASPAR oligos_8nt_mkv2_m2 C3H36:UN0844.1:JASPAR 0.717 0.538 12 9 9 12 0.7500 0.7500 1.0000 D 2
oligos_8nt_mkv2_m2 e_gw1.392.16.1/M0660_1.02/CISBP oligos_8nt_mkv2_m2 e_gw1.392.16.1:M0660_1.02:CISBP 0.708 0.531 12 9 9 12 0.7500 0.7500 1.0000 D 1
oligos_8nt_mkv2_m2 PHYPADRAFT_153324/MA0989.1/JASPAR oligos_8nt_mkv2_m2 PHYPADRAFT_153324:MA0989.1:JASPAR 0.706 0.529 12 9 9 12 0.7500 0.7500 1.0000 D 1
oligos_8nt_mkv2_m2 NAC69/MA2018.2/JASPAR oligos_8nt_mkv2_m2 NAC69:MA2018.2:JASPAR 0.793 0.529 12 8 8 12 0.6667 0.6667 1.0000 D 3
oligos_8nt_mkv2_m2 NLP7/MA1794.2/JASPAR oligos_8nt_mkv2_m2 NLP7:MA1794.2:JASPAR 0.787 0.525 12 8 8 12 0.6667 0.6667 1.0000 R 3
oligos_8nt_mkv2_m2 dof4.2/MA1273.1/JASPAR oligos_8nt_mkv2_m2 dof4.2:MA1273.1:JASPAR 0.821 0.519 12 19 12 19 0.6316 1.0000 0.6316 D -3
oligos_8nt_mkv2_m2 NFYB4.DAP/M0353/AthalianaCistrome oligos_8nt_mkv2_m2 NFYB4.DAP:M0353:AthalianaCistrome 0.875 0.510 12 7 7 12 0.5833 0.5833 1.0000 D 1
oligos_8nt_mkv2_m2 SAP11/UN0835.1/JASPAR oligos_8nt_mkv2_m2 SAP11:UN0835.1:JASPAR 0.864 0.504 12 7 7 12 0.5833 0.5833 1.0000 R 0
oligos_8nt_mkv2_m2 At2g41835.DAP/M0332/AthalianaCistrome oligos_8nt_mkv2_m2 At2g41835.DAP:M0332:AthalianaCistrome 0.864 0.504 12 7 7 12 0.5833 0.5833 1.0000 D 0
oligos_8nt_mkv2_m2 WRKY45/MA1087.3/JASPAR oligos_8nt_mkv2_m2 WRKY45:MA1087.3:JASPAR 0.727 0.503 12 10 9 13 0.6923 0.7500 0.9000 D 3
oligos_8nt_mkv2_m2 e_gw1.149.93.1/M0658_1.02/CISBP oligos_8nt_mkv2_m2 e_gw1.149.93.1:M0658_1.02:CISBP 0.747 0.498 12 8 8 12 0.6667 0.6667 1.0000 D 1
oligos_8nt_mkv2_m2 WRKY71/MA1316.2/JASPAR oligos_8nt_mkv2_m2 WRKY71:MA1316.2:JASPAR 0.708 0.490 12 10 9 13 0.6923 0.7500 0.9000 D 3
oligos_8nt_mkv2_m2 DOF5.7/MA0984.1/JASPAR oligos_8nt_mkv2_m2 DOF5.7:MA0984.1:JASPAR 0.729 0.486 12 8 8 12 0.6667 0.6667 1.0000 D 3
oligos_8nt_mkv2_m2 fgenesh1_pg.C_Chr_08.0001000114/M0664_1.02/CISBP oligos_8nt_mkv2_m2 fgenesh1_pg.C_Chr_08.0001000114:M0664_1.02:CISBP 0.727 0.485 12 8 8 12 0.6667 0.6667 1.0000 D 1
oligos_8nt_mkv2_m2 DOF5.6/MA0983.1/JASPAR oligos_8nt_mkv2_m2 DOF5.6:MA0983.1:JASPAR 0.727 0.484 12 8 8 12 0.6667 0.6667 1.0000 D 1
oligos_8nt_mkv2_m2 DOF5.6/M0657_1.02/CISBP oligos_8nt_mkv2_m2 DOF5.6:M0657_1.02:CISBP 0.725 0.484 12 8 8 12 0.6667 0.6667 1.0000 D 1
oligos_8nt_mkv2_m2 WRKY28.ampDAP/M0844/AthalianaCistrome oligos_8nt_mkv2_m2 WRKY28.ampDAP:M0844:AthalianaCistrome 0.744 0.478 12 11 9 14 0.6429 0.7500 0.8182 D 3
oligos_8nt_mkv2_m2 WRKY7/MA1313.2/JASPAR oligos_8nt_mkv2_m2 WRKY7:MA1313.2:JASPAR 0.738 0.474 12 11 9 14 0.6429 0.7500 0.8182 R 3
oligos_8nt_mkv2_m2 Zm00001d024644/MA2106.1/JASPAR oligos_8nt_mkv2_m2 Zm00001d024644:MA2106.1:JASPAR 0.710 0.473 12 8 8 12 0.6667 0.6667 1.0000 R 1
oligos_8nt_mkv2_m2 WRKY45.ampDAP/M0821/AthalianaCistrome oligos_8nt_mkv2_m2 WRKY45.ampDAP:M0821:AthalianaCistrome 0.732 0.471 12 11 9 14 0.6429 0.7500 0.8182 D 3
oligos_8nt_mkv2_m2 DOF5.3/MA1071.1/JASPAR oligos_8nt_mkv2_m2 DOF5.3:MA1071.1:JASPAR 0.803 0.469 12 7 7 12 0.5833 0.5833 1.0000 D 1
oligos_8nt_mkv2_m2 TMO6/M0654_1.02/CISBP oligos_8nt_mkv2_m2 TMO6:M0654_1.02:CISBP 0.802 0.468 12 7 7 12 0.5833 0.5833 1.0000 D 1
oligos_8nt_mkv2_m2 Zm00001d044785/MA1827.2/JASPAR oligos_8nt_mkv2_m2 Zm00001d044785:MA1827.2:JASPAR 0.802 0.468 12 7 7 12 0.5833 0.5833 1.0000 R 2
oligos_8nt_mkv2_m2 WRKY27/MA1318.2/JASPAR oligos_8nt_mkv2_m2 WRKY27:MA1318.2:JASPAR 0.727 0.467 12 11 9 14 0.6429 0.7500 0.8182 R 3
oligos_8nt_mkv2_m2 WRKY8/MA1094.3/JASPAR oligos_8nt_mkv2_m2 WRKY8:MA1094.3:JASPAR 0.725 0.466 12 11 9 14 0.6429 0.7500 0.8182 D 3
oligos_8nt_mkv2_m2 Zm00001d027846/MA1823.2/JASPAR oligos_8nt_mkv2_m2 Zm00001d027846:MA1823.2:JASPAR 0.861 0.464 12 8 7 13 0.5385 0.5833 0.8750 D -1
oligos_8nt_mkv2_m2 WRKY21/MA1079.3/JASPAR oligos_8nt_mkv2_m2 WRKY21:MA1079.3:JASPAR 0.709 0.456 12 11 9 14 0.6429 0.7500 0.8182 D 3
oligos_8nt_mkv2_m2 WRKY71/MA1316.1/JASPAR oligos_8nt_mkv2_m2 WRKY71:MA1316.1:JASPAR 0.708 0.455 12 11 9 14 0.6429 0.7500 0.8182 D 3
oligos_8nt_mkv2_m2 WRKY21.DAP/M0827/AthalianaCistrome oligos_8nt_mkv2_m2 WRKY21.DAP:M0827:AthalianaCistrome 0.704 0.453 12 11 9 14 0.6429 0.7500 0.8182 D 3
oligos_8nt_mkv2_m2 RKD2/UN0409.1/JASPAR oligos_8nt_mkv2_m2 RKD2:UN0409.1:JASPAR 0.715 0.452 12 19 12 19 0.6316 1.0000 0.6316 R -7
oligos_8nt_mkv2_m2 RKD2.DAP/M0728/AthalianaCistrome oligos_8nt_mkv2_m2 RKD2.DAP:M0728:AthalianaCistrome 0.715 0.452 12 19 12 19 0.6316 1.0000 0.6316 R -7
oligos_8nt_mkv2_m2 DOF1.7/MA1277.2/JASPAR oligos_8nt_mkv2_m2 DOF1.7:MA1277.2:JASPAR 0.702 0.452 12 11 9 14 0.6429 0.7500 0.8182 D 3
oligos_8nt_mkv2_m2 WRKY11/MA1306.2/JASPAR oligos_8nt_mkv2_m2 WRKY11:MA1306.2:JASPAR 0.701 0.451 12 11 9 14 0.6429 0.7500 0.8182 R 3
oligos_8nt_mkv2_m2 WRKY15.ampDAP/M0813/AthalianaCistrome oligos_8nt_mkv2_m2 WRKY15.ampDAP:M0813:AthalianaCistrome 0.728 0.437 12 12 9 15 0.6000 0.7500 0.7500 R 3
oligos_8nt_mkv2_m2 ATDOF2.4/M0648_1.02/CISBP oligos_8nt_mkv2_m2 ATDOF2.4:M0648_1.02:CISBP 0.748 0.436 12 7 7 12 0.5833 0.5833 1.0000 D 2
oligos_8nt_mkv2_m2 Zm00001d027846/MA1823.1/JASPAR oligos_8nt_mkv2_m2 Zm00001d027846:MA1823.1:JASPAR 0.727 0.436 12 12 9 15 0.6000 0.7500 0.7500 D -3
oligos_8nt_mkv2_m2 DOF2.4/MA0982.1/JASPAR oligos_8nt_mkv2_m2 DOF2.4:MA0982.1:JASPAR 0.747 0.436 12 7 7 12 0.5833 0.5833 1.0000 D 2
oligos_8nt_mkv2_m2 DOF3.5/MA1276.2/JASPAR oligos_8nt_mkv2_m2 DOF3.5:MA1276.2:JASPAR 0.744 0.434 12 7 7 12 0.5833 0.5833 1.0000 D 2
oligos_8nt_mkv2_m2 CDF2/MA0973.2/JASPAR oligos_8nt_mkv2_m2 CDF2:MA0973.2:JASPAR 0.743 0.434 12 7 7 12 0.5833 0.5833 1.0000 D 2
oligos_8nt_mkv2_m2 DOF5.4/MA1280.2/JASPAR oligos_8nt_mkv2_m2 DOF5.4:MA1280.2:JASPAR 0.740 0.431 12 7 7 12 0.5833 0.5833 1.0000 D 2
oligos_8nt_mkv2_m2 AT5G04760/MA2031.2/JASPAR oligos_8nt_mkv2_m2 AT5G04760:MA2031.2:JASPAR 0.740 0.431 12 7 7 12 0.5833 0.5833 1.0000 R 1
oligos_8nt_mkv2_m2 RKD2/UN0409.2/JASPAR oligos_8nt_mkv2_m2 RKD2:UN0409.2:JASPAR 0.731 0.430 12 15 10 17 0.5882 0.8333 0.6667 R -5
oligos_8nt_mkv2_m2 RKD2.ampDAP/M0727/AthalianaCistrome oligos_8nt_mkv2_m2 RKD2.ampDAP:M0727:AthalianaCistrome 0.730 0.429 12 15 10 17 0.5882 0.8333 0.6667 D -5
oligos_8nt_mkv2_m2 ERF026/UN0832.1/JASPAR oligos_8nt_mkv2_m2 ERF026:UN0832.1:JASPAR 0.846 0.423 12 6 6 12 0.5000 0.5000 1.0000 D 0
oligos_8nt_mkv2_m2 WRKY17/MA1299.2/JASPAR oligos_8nt_mkv2_m2 WRKY17:MA1299.2:JASPAR 0.723 0.413 12 10 8 14 0.5714 0.6667 0.8000 D 4
oligos_8nt_mkv2_m2 WRKY22.ampDAP/M0798/AthalianaCistrome oligos_8nt_mkv2_m2 WRKY22.ampDAP:M0798:AthalianaCistrome 0.730 0.411 12 13 9 16 0.5625 0.7500 0.6923 R 3
oligos_8nt_mkv2_m2 WRKY27/MA1318.1/JASPAR oligos_8nt_mkv2_m2 WRKY27:MA1318.1:JASPAR 0.727 0.409 12 13 9 16 0.5625 0.7500 0.6923 R 3
oligos_8nt_mkv2_m2 WRKY22/MA1303.2/JASPAR oligos_8nt_mkv2_m2 WRKY22:MA1303.2:JASPAR 0.704 0.402 12 10 8 14 0.5714 0.6667 0.8000 D 4
oligos_8nt_mkv2_m2 WRKY46/MA1296.2/JASPAR oligos_8nt_mkv2_m2 WRKY46:MA1296.2:JASPAR 0.704 0.402 12 10 8 14 0.5714 0.6667 0.8000 R 4
oligos_8nt_mkv2_m2 WRKY21.ampDAP/M0834/AthalianaCistrome oligos_8nt_mkv2_m2 WRKY21.ampDAP:M0834:AthalianaCistrome 0.712 0.400 12 13 9 16 0.5625 0.7500 0.6923 R 3 
 Host name	rsat
 Job started	2025-05-21.034010
 Job done	2025-05-21.034012
 Seconds	1.22
	user	1.22
	system	0.07
	cuser	0.23
;	csystem	0.03