/var/www/html/rsat/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_8nt_mkv2_m4/peak-motifs_oligos_8nt_mkv2_m4_vs_db_footprintDB-plants.tab 
 compare-matrices  -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_8nt_mkv2_m4/peak-motifs_oligos_8nt_mkv2_m4.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_8nt_mkv2_m4/peak-motifs_oligos_8nt_mkv2_m4_vs_db_footprintDB-plants
 Program version       	1.118
 Quick mode 
 Input files
	file1 	$RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_8nt_mkv2_m4/peak-motifs_oligos_8nt_mkv2_m4.tf
	file2 	$RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf
 Output files
	match_table_html	$RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_8nt_mkv2_m4/peak-motifs_oligos_8nt_mkv2_m4_vs_db_footprintDB-plants.html
	alignments_1ton	$RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_8nt_mkv2_m4/peak-motifs_oligos_8nt_mkv2_m4_vs_db_footprintDB-plants_alignments_1ton.tab
	prefix       	$RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_8nt_mkv2_m4/peak-motifs_oligos_8nt_mkv2_m4_vs_db_footprintDB-plants
	match_table_txt	$RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_8nt_mkv2_m4/peak-motifs_oligos_8nt_mkv2_m4_vs_db_footprintDB-plants.tab
	alignments_1ton_html	$RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_8nt_mkv2_m4/peak-motifs_oligos_8nt_mkv2_m4_vs_db_footprintDB-plants_alignments_1ton.html
	html_index   	$RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_8nt_mkv2_m4/peak-motifs_oligos_8nt_mkv2_m4_vs_db_footprintDB-plants_index.html
 Matrices
	file1	1 matrices	$RSAT/public_html/tmp/www-data/2025/05/21/peak-motifs.2025-05-21.033913_2025-05-21.033913_SwV7J2/results/discovered_motifs/oligos_8nt_mkv2_m4/peak-motifs_oligos_8nt_mkv2_m4.tf
		file1	1	12	39
	file2	2958 matrices	$RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf
		file2		1		8		5
		file2		2		8		3
		file2		3		8		5
		file2		4		8		1
		file2		5		8		2
		file2		6		8		2
		file2		7		8		6
		file2		8		8		2
		file2		9		8		8
		file2		10		8		1
		file2		11		8		4
		...	2948 more matrices
 Column content
	1	id1          	Identifier of the first matrix
	2	id2          	Identifier of the second matrix
	3	name1        	Name of the first matrix
	4	name2        	Name of the second matrix
	5	cor          	Pearson coefficient of correlation between frequency matrices
	6	Ncor         	Normalized correlation. Ncor = cor * Wr
	7	w1           	Width of the first matrix
	8	w2           	Width of the second matrix
	9	w            	Alignment length (number of overlapping columns between matrix 1 and matrix 2, as a function of the offset)
	10	W            	Total alignment length (overlapping + non-overlapping columns). W = w1 + w2 - w
	11	Wr           	Relative alignment length (overlap divided by the total alignemnt length). Wr = w/W
	12	wr1          	Alignment length relative to the width of the first matrix. wr1 = w/w1
	13	wr2          	Alignment length relative to the width of the second matrix. wr2 = w/w2
	14	strand       	"strand", i.e. orientation of matrix 2 relative to matrix 1 (D=direct;  R=reverse)
	15	offset       	shift of the second matrix relative to the first matrix (negative:left; positive: right)
id1 id2 name1 name2 cor Ncor w1 w2 w W Wr wr1 wr2 strand offset
oligos_8nt_mkv2_m4 GLYMA-07G038400/MA1809.1/JASPAR oligos_8nt_mkv2_m4 GLYMA-07G038400:MA1809.1:JASPAR 0.791 0.725 12 11 11 12 0.9167 0.9167 1.0000 R 0
oligos_8nt_mkv2_m4 GRF6/MA2016.1/JASPAR oligos_8nt_mkv2_m4 GRF6:MA2016.1:JASPAR 0.741 0.618 12 10 10 12 0.8333 0.8333 1.0000 R 1
oligos_8nt_mkv2_m4 KNAT3/M0855_1.02/CISBP oligos_8nt_mkv2_m4 KNAT3:M0855_1.02:CISBP 0.716 0.596 12 10 10 12 0.8333 0.8333 1.0000 R 1
oligos_8nt_mkv2_m4 GRF9.ampDAP/M0406/AthalianaCistrome oligos_8nt_mkv2_m4 GRF9.ampDAP:M0406:AthalianaCistrome 0.784 0.523 12 8 8 12 0.6667 0.6667 1.0000 D 3
oligos_8nt_mkv2_m4 GLYMA-07G038400/MA1809.2/JASPAR oligos_8nt_mkv2_m4 GLYMA-07G038400:MA1809.2:JASPAR 0.837 0.488 12 7 7 12 0.5833 0.5833 1.0000 R 2
oligos_8nt_mkv2_m4 GRMZM2G135447/M1211_1.02/CISBP oligos_8nt_mkv2_m4 GRMZM2G135447:M1211_1.02:CISBP 0.729 0.486 12 8 8 12 0.6667 0.6667 1.0000 R 2
oligos_8nt_mkv2_m4 AtGRF6.DAP/M0405/AthalianaCistrome oligos_8nt_mkv2_m4 AtGRF6.DAP:M0405:AthalianaCistrome 0.769 0.481 12 14 10 16 0.6250 0.8333 0.7143 D -4
oligos_8nt_mkv2_m4 BZIP52/MA1343.2/JASPAR oligos_8nt_mkv2_m4 BZIP52:MA1343.2:JASPAR 0.702 0.468 12 8 8 12 0.6667 0.6667 1.0000 D 3
oligos_8nt_mkv2_m4 GLYMA-06G314400/MA1808.2/JASPAR oligos_8nt_mkv2_m4 GLYMA-06G314400:MA1808.2:JASPAR 0.701 0.467 12 8 8 12 0.6667 0.6667 1.0000 D 0
oligos_8nt_mkv2_m4 GRF6/MA2016.2/JASPAR oligos_8nt_mkv2_m4 GRF6:MA2016.2:JASPAR 0.788 0.460 12 7 7 12 0.5833 0.5833 1.0000 R 3
oligos_8nt_mkv2_m4 GRF9/MA1756.2/JASPAR oligos_8nt_mkv2_m4 GRF9:MA1756.2:JASPAR 0.786 0.458 12 7 7 12 0.5833 0.5833 1.0000 D 3
oligos_8nt_mkv2_m4 GRMZM2G135447/MA2392.1/JASPAR oligos_8nt_mkv2_m4 GRMZM2G135447:MA2392.1:JASPAR 0.765 0.446 12 7 7 12 0.5833 0.5833 1.0000 D 3
oligos_8nt_mkv2_m4 Lysine-specific/6a57_A/3D-footprint oligos_8nt_mkv2_m4 Lysine-specific:6a57_A:3D-footprint 0.882 0.441 12 6 6 12 0.5000 0.5000 1.0000 D 5
oligos_8nt_mkv2_m4 Lysine-specific/6jnl_A/3D-footprint oligos_8nt_mkv2_m4 Lysine-specific:6jnl_A:3D-footprint 0.867 0.433 12 6 6 12 0.5000 0.5000 1.0000 D 5
oligos_8nt_mkv2_m4 Lysine-specific/6jnn_B/3D-footprint oligos_8nt_mkv2_m4 Lysine-specific:6jnn_B:3D-footprint 0.853 0.427 12 6 6 12 0.5000 0.5000 1.0000 D 4
oligos_8nt_mkv2_m4 LEC1-A/UN0424.2/JASPAR oligos_8nt_mkv2_m4 LEC1-A:UN0424.2:JASPAR 0.726 0.424 12 7 7 12 0.5833 0.5833 1.0000 D 0
oligos_8nt_mkv2_m4 Lysine-specific/6jnm_A/3D-footprint oligos_8nt_mkv2_m4 Lysine-specific:6jnm_A:3D-footprint 0.708 0.413 12 7 7 12 0.5833 0.5833 1.0000 R 4
oligos_8nt_mkv2_m4 Probable/2lex_A/3D-footprint oligos_8nt_mkv2_m4 Probable:2lex_A:3D-footprint 0.823 0.411 12 6 6 12 0.5000 0.5000 1.0000 R 2
oligos_8nt_mkv2_m4 bHLH74.ampDAP/M0179/AthalianaCistrome oligos_8nt_mkv2_m4 bHLH74.ampDAP:M0179:AthalianaCistrome 0.757 0.408 12 8 7 13 0.5385 0.5833 0.8750 D -1 
 Host name	rsat
 Job started	2025-05-21.034014
 Job done	2025-05-21.034015
 Seconds	1.2
	user	1.2
	system	0.11
	cuser	0.21
;	csystem	0.04