peak-motifs MEsteelblue

Motif discovery

Motif 1 oligos_6nt_test_vs_ctrl_m1

k-mer sig=5.50; evalue=3.2e-06

brvaACGTGCrw

WYGCACGTTBYV

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor brvaACGTGCrw

O11:MA1816.1:JASPAR O11/MA1816.1/JASPAR R 12 1.0000 0.753 0.753 NA NA

HYH:MA1425.1:JASPAR HYH/MA1425.1/JASPAR D 12 1.0000 0.721 0.721 NA NA

ABF4:MA1659.1:JASPAR ABF4/MA1659.1/JASPAR R 12 1.0000 0.713 0.713 NA NA

Total matches= 153 (150 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 44 (20.18%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr20g0113561)
Mean nb of predicted sites per peak: 1.16

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_test_vs_ctrl_m2

k-mer sig=4.70; evalue=2e-05

dtGCACGtCmy

RKGACGTGCAH

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor dtGCACGtCmy

0300010311:M0363_1.02:CISBP 0300010311/M0363_1.02/CISBP R 11 1.0000 0.833 0.833 NA NA

LOC_Os02g49560:M0327_1.02:CISBP LOC_Os02g49560/M0327_1.02/CISBP D 11 1.0000 0.778 0.778 NA NA

HYH:MA1425.1:JASPAR HYH/MA1425.1/JASPAR R 11 0.9167 0.840 0.770 NA NA

Total matches= 250 (247 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 45 (20.64%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr05g0211281)
Mean nb of predicted sites per peak: 1.20

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_test_vs_ctrl_m3

k-mer sig=1.48; evalue=0.033

wtatTATTAabm

KVTTAATAATAW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wtatTATTAabm

ATHB25.ampDAP:M0853:AthalianaCistrome ATHB25.ampDAP/M0853/AthalianaCistrome D 11 0.9167 0.758 0.695 NA NA

ATHB23.ampDAP:M0855:AthalianaCistrome ATHB23.ampDAP/M0855/AthalianaCistrome D 11 0.9167 0.756 0.693 NA NA

ZHD10:MA1807.1:JASPAR ZHD10/MA1807.1/JASPAR D 11 0.9167 0.756 0.693 NA NA

Total matches= 83 (80 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 15 (6.88%)
Max nb of predicted sites per peak: 1
(gene-Lalb_Chr23g0273821)
Mean nb of predicted sites per peak: 1.00

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_test_vs_ctrl_m4

k-mer sig=5.50; evalue=3.2e-06

grvaACGTGGgr

YCCCACGTTBYC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor grvaACGTGGgr

ABF4:MA1659.1:JASPAR ABF4/MA1659.1/JASPAR R 12 1.0000 0.836 0.836 NA NA

HYH:MA1425.1:JASPAR HYH/MA1425.1/JASPAR D 12 1.0000 0.764 0.764 NA NA

LOC_Os02g49560:M0327_1.02:CISBP LOC_Os02g49560/M0327_1.02/CISBP R 11 0.9167 0.814 0.746 NA NA

Total matches= 183 (180 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 46 (21.10%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr21g0310801)
Mean nb of predicted sites per peak: 1.20

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_test_vs_ctrl_m5

k-mer sig=0.61; evalue=0.25

mrAGTCAAms

SKTTGACTYK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mrAGTCAAms

WRKY40:MA1085.2:JASPAR WRKY40/MA1085.2/JASPAR D 10 1.0000 0.995 0.995 NA NA

WRKY57:M1680_1.02:CISBP WRKY57/M1680_1.02/CISBP D 10 1.0000 0.931 0.931 NA NA

WRKY57:MA1089.1:JASPAR WRKY57/MA1089.1/JASPAR D 10 1.0000 0.931 0.931 NA NA

Total matches= 190 (187 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 57 (26.15%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr20g0116241)
Mean nb of predicted sites per peak: 1.11

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 oligos_6nt_test_vs_ctrl_m6

k-mer sig=0.31; evalue=0.49

rrAGTTGArk

MYTCAACTYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrAGTTGArk

WRKY30:MA1083.1:JASPAR WRKY30/MA1083.1/JASPAR R 10 1.0000 0.731 0.731 NA NA

WRKY30:M1697_1.02:CISBP WRKY30/M1697_1.02/CISBP R 10 1.0000 0.730 0.730 NA NA

WRKY53:MA1805.1:JASPAR WRKY53/MA1805.1/JASPAR R 9 0.9000 0.737 0.663 NA NA

Total matches= 210 (207 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 72 (33.03%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr07g0177311)
Mean nb of predicted sites per peak: 1.22

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 oligos_7nt_test_vs_ctrl_m1

k-mer sig=2.31; evalue=0.0049

graGaCGtGCrd

HYGCACGTCTYC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor graGaCGtGCrd

HYH:MA1425.1:JASPAR HYH/MA1425.1/JASPAR D 12 1.0000 0.834 0.834 NA NA

ABF4:MA1659.1:JASPAR ABF4/MA1659.1/JASPAR R 12 1.0000 0.814 0.814 NA NA

O11:MA1816.1:JASPAR O11/MA1816.1/JASPAR R 12 1.0000 0.785 0.785 NA NA

Total matches= 221 (218 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 49 (22.48%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr05g0211281)
Mean nb of predicted sites per peak: 1.18

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_7nt_test_vs_ctrl_m2

k-mer sig=0.83; evalue=0.15

yrtGTtTAAbr

YVTTAAACAYR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yrtGTtTAAbr

AT2G20110:M0588_1.02:CISBP AT2G20110/M0588_1.02/CISBP D 8 0.7273 0.775 0.563 NA NA

GT-1:MA1020.1:JASPAR GT-1/MA1020.1/JASPAR R 8 0.7273 0.746 0.543 NA NA

GT-1:M1276_1.02:CISBP GT-1/M1276_1.02/CISBP R 8 0.7273 0.746 0.542 NA NA

Total matches= 23 (20 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 39 (17.89%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr23g0269331)
Mean nb of predicted sites per peak: 1.10

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 oligos_7nt_test_vs_ctrl_m3

k-mer sig=0.82; evalue=0.15

krCaACGTGCkt

AMGCACGTTGYM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor krCaACGTGCkt

O11:MA1816.1:JASPAR O11/MA1816.1/JASPAR R 12 1.0000 0.735 0.735 NA NA

bHLH80:MA1357.1:JASPAR bHLH80/MA1357.1/JASPAR R 11 0.9167 0.756 0.693 NA NA

bHLH80.ampDAP:M0163:AthalianaCistrome bHLH80.ampDAP/M0163/AthalianaCistrome D 11 0.9167 0.752 0.689 NA NA

Total matches= 152 (149 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 40 (18.35%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr20g0113561)
Mean nb of predicted sites per peak: 1.07

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_7nt_test_vs_ctrl_m4

k-mer sig=0.75; evalue=0.18

krCaaCGTGGkg

CMCCACGTTGYM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor krCaaCGTGGkg

ABF4:MA1659.1:JASPAR ABF4/MA1659.1/JASPAR R 12 1.0000 0.823 0.823 NA NA

HYH:MA1425.1:JASPAR HYH/MA1425.1/JASPAR D 12 1.0000 0.729 0.729 NA NA

LOC_Os02g49560:M0327_1.02:CISBP LOC_Os02g49560/M0327_1.02/CISBP R 11 0.9167 0.790 0.724 NA NA

Total matches= 148 (145 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 47 (21.56%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr01g0002131)
Mean nb of predicted sites per peak: 1.17

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_8nt_test_vs_ctrl_m1

k-mer sig=1.43; evalue=0.037

draGaCGtGCdv

BHGCACGTCTYH

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor draGaCGtGCdv

HYH:MA1425.1:JASPAR HYH/MA1425.1/JASPAR D 12 1.0000 0.754 0.754 NA NA

ABF4:MA1659.1:JASPAR ABF4/MA1659.1/JASPAR R 12 1.0000 0.741 0.741 NA NA

O11:MA1816.1:JASPAR O11/MA1816.1/JASPAR R 12 1.0000 0.712 0.712 NA NA

Total matches= 128 (125 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 46 (21.10%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr05g0226481)
Mean nb of predicted sites per peak: 1.07

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_8nt_test_vs_ctrl_m2

k-mer sig=0.58; evalue=0.26

rvaACGTGGtgs

SCACCACGTTBY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rvaACGTGGtgs

LOC_Os02g49560:M0327_1.02:CISBP LOC_Os02g49560/M0327_1.02/CISBP R 11 0.9167 0.741 0.679 NA NA

0300010311:M0363_1.02:CISBP 0300010311/M0363_1.02/CISBP D 11 0.9167 0.726 0.665 NA NA

ABF4:MA1659.1:JASPAR ABF4/MA1659.1/JASPAR R 11 0.8462 0.766 0.648 NA NA

Total matches= 90 (87 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 44 (20.18%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr01g0002131)
Mean nb of predicted sites per peak: 1.32

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 dyads_test_vs_ctrl_m1

k-mer sig=4.76; evalue=1.7e-05

rvaACGTGCdw

WHGCACGTTBY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rvaACGTGCdw

LOC_Os02g49560:M0327_1.02:CISBP LOC_Os02g49560/M0327_1.02/CISBP R 11 1.0000 0.737 0.737 NA NA

BEE2:M0161_1.02:CISBP BEE2/M0161_1.02/CISBP R 10 0.9091 0.805 0.732 NA NA

BEE2:MA0956.1:JASPAR BEE2/MA0956.1/JASPAR D 10 0.9091 0.804 0.731 NA NA

Total matches= 163 (160 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 45 (20.64%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr20g0113561)
Mean nb of predicted sites per peak: 1.16

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 dyads_test_vs_ctrl_m2

k-mer sig=4.09; evalue=8.1e-05

wtGCaCGtCmy

RKGACGTGCAW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wtGCaCGtCmy

0300010311:M0363_1.02:CISBP 0300010311/M0363_1.02/CISBP R 11 1.0000 0.836 0.836 NA NA

LOC_Os02g49560:M0327_1.02:CISBP LOC_Os02g49560/M0327_1.02/CISBP D 11 1.0000 0.783 0.783 NA NA

HYH:MA1425.1:JASPAR HYH/MA1425.1/JASPAR R 11 0.9167 0.842 0.772 NA NA

Total matches= 259 (256 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 49 (22.48%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr05g0211281)
Mean nb of predicted sites per peak: 1.20

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 dyads_test_vs_ctrl_m3

k-mer sig=4.76; evalue=1.7e-05

srtAASsySbTaabw

WVTTAVSRSSTTAYS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor srtAASsySbTaabw

At5g28300:At5g28300:ArabidopsisPBM At5g28300/At5g28300/ArabidopsisPBM D 10 0.6667 0.716 0.478 NA NA

AtMYB74_II:AtMYB74_II:AthaMYB AtMYB74_II/AtMYB74_II/AthaMYB R 8 0.5333 0.821 0.438 NA NA

GTL1.ampDAP:M0769:AthalianaCistrome GTL1.ampDAP/M0769/AthalianaCistrome D 9 0.5625 0.767 0.431 NA NA

Total matches= 12 (9 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 15 (6.88%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr02g0149481)
Mean nb of predicted sites per peak: 1.07

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 16 dyads_test_vs_ctrl_m4

k-mer sig=4.76; evalue=1.7e-05

mttAAsvySstmrttavwamtaarg

CYTTAKTWBTAAYKASSRBSTTAAK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mttAAsvySstmrttavwamtaarg

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 16 (7.34%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr03g0027711)
Mean nb of predicted sites per peak: 1.06

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 17 dyads_test_vs_ctrl_m5

k-mer sig=4.76; evalue=1.7e-05

wsaCasSgbSkcktwasawmwtwGtCbc

GVGACWAWKWTSTWAMGMSVCSSTGTSW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wsaCasSgbSkcktwasawmwtwGtCbc

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 13 (5.96%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr14g0367881)
Mean nb of predicted sites per peak: 1.23

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]
Discovered motifs versus transcription factor databases
Motifs versus footprintDB-plants database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: MEsteelblue (21/05/2025 04:03)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mttAAsvySstmrttavwamtaarg

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wsaCasSgbSkcktwasawmwtwGtCbc

Total matches= 0

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

RSAT - peak-motifs result

Analysis: MEsteelblue (21/05/2025 04:03)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor mttAAsvySstmrttavwamtaarg Total matches= 0

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor wsaCasSgbSkcktwasawmwtwGtCbc Total matches= 0

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mttAAsvySstmrttavwamtaarg

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wsaCasSgbSkcktwasawmwtwGtCbc

Total matches= 0