position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/22/peak-motifs.2025-05-22.140202_2025-05-22.140202_bQqV1Q/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta -format fasta -sort -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title ELAV_activated_vs_repressed -origin center -offset 0 -o $RSAT/public_html/tmp/www-data/2025/05/22/peak-motifs.2025-05-22.140202_2025-05-22.140202_bQqV1Q/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Citation: van Helden, et al. (2000). Nucleic Acids Res 28, 1000-1010. Sequence file $RSAT/public_html/tmp/www-data/2025/05/22/peak-motifs.2025-05-22.140202_2025-05-22.140202_bQqV1Q/data/sequences/peak-motifs_test_maxlen1000_purged_ml40_mis3.fasta Sequence format fasta Sequence type dna Output file $RSAT/public_html/tmp/www-data/2025/05/22/peak-motifs.2025-05-22.140202_2025-05-22.140202_bQqV1Q/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab Oligo length 1 Occurrences counted on a single strands Conditions of applicability checked. Background model estimation: homogeneous repartition Sequence statistics: Nb of sequences 335 Sum of sequence lengths 83080 Min sequence length 0 Max sequence length 544 Average sequence length 248 Possible positions 83080 Oligonucleotide statistics: Total occurrences 41875 Position interval parameters: Position interval 20 Number of windows 28 Total positions 83080 Degrees of freedom 27 K-mer clustering parameters: Number of clusters 0 Clustering method complete Position intervals: window [min,max] mid seq occ 1 -14 [-279,-260] -269.5 1 12 2 -13 [-259,-240] -249.5 1 20 3 -12 [-239,-220] -229.5 1 20 4 -11 [-219,-200] -209.5 1 20 5 -10 [-199,-180] -189.5 1 20 6 -9 [-179,-160] -169.5 1 20 7 -8 [-159,-140] -149.5 1 20 8 -7 [-139,-120] -129.5 333 1348 9 -6 [-119,-100] -109.5 333 6660 10 -5 [-99,-80] -89.5 333 6660 11 -4 [-79,-60] -69.5 333 6660 12 -3 [-59,-40] -49.5 335 6680 13 -2 [-39,-20] -29.5 335 6700 14 -1 [-19,0] -9.5 335 6700 15 0 [1,20] 10.5 335 6700 16 1 [21,40] 30.5 335 6700 17 2 [41,60] 50.5 335 6680 18 3 [61,80] 70.5 333 6660 19 4 [81,100] 90.5 333 6660 20 5 [101,120] 110.5 333 6660 21 6 [121,140] 130.5 333 1348 22 7 [141,160] 150.5 1 20 23 8 [161,180] 170.5 1 20 24 9 [181,200] 190.5 1 20 25 10 [201,220] 210.5 1 20 26 11 [221,240] 230.5 1 20 27 12 [241,260] 250.5 1 20 28 13 [261,280] 270.5 1 12 Column headers 1 seq pattern sequence 2 id pattern identifier 3 occ pattern occurrences 4 chi2 observed chi-square 5 df degrees of freedom 6 Pval P-value (probability for one word to be a false positive) 7 Eval E-value; expected number of false positives (Eval = Pval * nb_tests) 8 sig Significance (sig = -log10(Eval)) 9 rank rank of the pattern according to sorting criterion 10 -269.5 occurrences in window 1 [-279,-260] 11 -249.5 occurrences in window 2 [-259,-240] 12 -229.5 occurrences in window 3 [-239,-220] 13 -209.5 occurrences in window 4 [-219,-200] 14 -189.5 occurrences in window 5 [-199,-180] 15 -169.5 occurrences in window 6 [-179,-160] 16 -149.5 occurrences in window 7 [-159,-140] 17 -129.5 occurrences in window 8 [-139,-120] 18 -109.5 occurrences in window 9 [-119,-100] 19 -89.5 occurrences in window 10 [-99,-80] 20 -69.5 occurrences in window 11 [-79,-60] 21 -49.5 occurrences in window 12 [-59,-40] 22 -29.5 occurrences in window 13 [-39,-20] 23 -9.5 occurrences in window 14 [-19,0] 24 10.5 occurrences in window 15 [1,20] 25 30.5 occurrences in window 16 [21,40] 26 50.5 occurrences in window 17 [41,60] 27 70.5 occurrences in window 18 [61,80] 28 90.5 occurrences in window 19 [81,100] 29 110.5 occurrences in window 20 [101,120] 30 130.5 occurrences in window 21 [121,140] 31 150.5 occurrences in window 22 [141,160] 32 170.5 occurrences in window 23 [161,180] 33 190.5 occurrences in window 24 [181,200] 34 210.5 occurrences in window 25 [201,220] 35 230.5 occurrences in window 26 [221,240] 36 250.5 occurrences in window 27 [241,260] 37 270.5 occurrences in window 28 [261,280]
| seq | id | occ | chi2 | df | Pval | Eval | sig | rank | -269.5 | -249.5 | -229.5 | -209.5 | -189.5 | -169.5 | -149.5 | -129.5 | -109.5 | -89.5 | -69.5 | -49.5 | -29.5 | -9.5 | 10.5 | 30.5 | 50.5 | 70.5 | 90.5 | 110.5 | 130.5 | 150.5 | 170.5 | 190.5 | 210.5 | 230.5 | 250.5 | 270.5 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| g | g | 8422 | 8922.1 | 27 | 0.0e+00 | 0 | 300 | 1 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 311 | 1534 | 1472 | 1473 | 1672 | 1245 | 14 | 335 | 340 | 7 | 6 | 7 | 2 | 0 | 1 | 0 | 1 | 0 | 0 | 0 | 0 |
| t | t | 12150 | 6947.5 | 27 | 0.0e+00 | 0 | 300 | 2 | 1 | 1 | 0 | 0 | 2 | 2 | 2 | 358 | 1844 | 1981 | 2044 | 1701 | 1503 | 344 | 342 | 14 | 667 | 332 | 664 | 338 | 3 | 1 | 0 | 1 | 2 | 1 | 2 | 0 |
| c | c | 9508 | 6943.8 | 27 | 0.0e+00 | 0 | 300 | 3 | 2 | 0 | 1 | 0 | 0 | 1 | 1 | 318 | 1572 | 1554 | 1535 | 1598 | 1218 | 672 | 341 | 9 | 8 | 335 | 4 | 333 | 3 | 1 | 0 | 0 | 0 | 1 | 1 | 0 |
| a | a | 11795 | 5567.7 | 27 | 0.0e+00 | 0 | 300 | 4 | 0 | 2 | 2 | 2 | 4 | 0 | 0 | 341 | 1695 | 1638 | 1590 | 1695 | 1389 | 672 | 684 | 357 | 1350 | 343 | 9 | 11 | 2 | 1 | 3 | 2 | 3 | 0 | 0 | 0 |
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