; convert-matrix -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/23/oligo-analysis_2025-05-23.055439_7m64oy_pssm_count_matrices.tf -from tf -to tab -return counts -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2025/05/23/oligo-analysis_2025-05-23.055439_7m64oy_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2025/05/23/oligo-analysis_2025-05-23.055439_7m64oy_pssm_count_matrices_links.txt
; Input files
; input /var/www/html/rsat/public_html/tmp/www-data/2025/05/23/oligo-analysis_2025-05-23.055439_7m64oy_pssm_count_matrices.tf
; Input format tf
; Output files
; output /var/www/html/rsat/public_html/tmp/www-data/2025/05/23/oligo-analysis_2025-05-23.055439_7m64oy_pssm_count_matrices_links.txt
; Output format tab
; pseudo-weight 1
a 438 409 45 41 44 137 50 31 1250 1301 72 431 430
c 242 259 36 7 42 1043 11 45 62 13 35 290 221
g 265 309 30 44 1216 77 7 1279 46 29 1216 283 243
t 449 417 1283 1302 92 137 1326 39 36 51 71 390 500
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.055439_7m64oy_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.055439_7m64oy_pssm_count_matrices_logo_m1_rc.png
;
a 539 536 1427 1476 92 92 97 116 95 1498 1462 624 554
c 293 328 56 15 61 1343 11 62 1368 32 19 307 270
g 275 413 39 28 1345 35 8 1263 39 7 48 259 293
t 462 292 47 50 71 99 1453 128 67 32 40 379 452
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.055439_7m64oy_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.055439_7m64oy_pssm_count_matrices_logo_m2_rc.png
;
a 410 328 35 30 45 110 1181 66 78 1116 74 309 395
c 242 198 36 4 34 1004 4 29 1093 28 23 284 202
g 220 244 16 19 1082 40 9 1076 30 15 55 219 239
t 370 472 1155 1189 81 88 48 71 41 83 1090 430 406
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.055439_7m64oy_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.055439_7m64oy_pssm_count_matrices_logo_m3_rc.png
;
a 4802 4938 1380 9723 9805 1716 3750 9697 1528 9587 9693 8768 4920 4638
c 1418 988 561 381 109 425 5305 191 528 470 233 307 1582 1566
g 1788 2005 8280 322 359 8018 983 167 8162 355 458 1189 2006 1956
t 2738 2815 525 320 473 587 708 691 528 334 362 482 2238 2586
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.055439_7m64oy_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.055439_7m64oy_pssm_count_matrices_logo_m4_rc.png
;
a 856 861 131 92 2264 262 2447 236 2397 2401 2364 938 938
c 449 394 82 53 78 2047 6 151 54 42 50 470 427
g 450 389 66 60 90 123 13 2023 44 59 71 469 451
t 800 911 2276 2350 123 123 89 145 60 53 70 678 739
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.055439_7m64oy_pssm_count_matrices_logo_m5.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.055439_7m64oy_pssm_count_matrices_logo_m5_rc.png
;
a 351 308 71 775 668 95 788 142 73 800 143 60 781 710 255 343
c 139 151 698 42 33 689 11 29 728 9 26 735 36 30 257 162
g 115 192 43 10 104 36 8 635 25 7 629 32 11 68 124 128
t 249 203 42 27 49 34 47 48 28 38 56 27 26 46 218 221
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.055439_7m64oy_pssm_count_matrices_logo_m6.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.055439_7m64oy_pssm_count_matrices_logo_m6_rc.png
;
a 654 596 78 50 32 87 72 123 123 1988 1933 762 688
c 409 411 50 55 56 1835 15 143 1801 67 43 377 388
g 332 391 23 33 74 93 14 1609 78 12 63 357 389
t 736 733 1980 1993 1969 116 2030 256 129 64 92 635 666
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.055439_7m64oy_pssm_count_matrices_logo_m7.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.055439_7m64oy_pssm_count_matrices_logo_m7_rc.png
;
a 502 464 67 49 1274 83 1367 160 1337 1345 129 521 552
c 231 222 27 33 35 1199 6 57 39 9 50 278 236
g 266 242 36 36 50 75 5 1156 20 19 1173 227 256
t 423 494 1292 1304 63 65 44 49 26 49 70 396 378
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.055439_7m64oy_pssm_count_matrices_logo_m8.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.055439_7m64oy_pssm_count_matrices_logo_m8_rc.png
;
a 1130 1093 277 2811 2769 472 2822 302 2786 2818 2748 1242 1160
c 505 628 2492 55 56 2233 39 179 93 50 62 576 529
g 444 480 103 16 72 142 17 2357 43 53 78 503 530
t 885 763 92 82 67 117 86 126 42 43 76 643 745
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.055439_7m64oy_pssm_count_matrices_logo_m9.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.055439_7m64oy_pssm_count_matrices_logo_m9_rc.png
;
a 627 594 0 1780 0 0 1780 1780 619 603
c 319 258 1780 0 0 0 0 0 300 348
g 244 415 0 0 1780 1780 0 0 439 322
t 590 513 0 0 0 0 0 0 422 507
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.055439_7m64oy_pssm_count_matrices_logo_m10.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.055439_7m64oy_pssm_count_matrices_logo_m10_rc.png
;
a 637 575 111 67 82 82 1798 162 1745 1769 1724 616 635
c 305 363 1615 25 52 1609 17 107 64 43 34 395 339
g 295 352 46 15 63 109 17 1506 42 36 52 330 316
t 658 605 123 1788 1698 95 63 120 44 47 85 554 605
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.055439_7m64oy_pssm_count_matrices_logo_m11.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.055439_7m64oy_pssm_count_matrices_logo_m11_rc.png
;
a 790 767 1717 72 51 120 55 88 104 2342 1798 908 806
c 390 474 201 46 27 1978 13 83 78 35 190 386 423
g 436 466 148 22 45 113 19 2197 41 42 166 376 425
t 858 767 408 2334 2351 263 2387 106 2251 55 320 804 820
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.055439_7m64oy_pssm_count_matrices_logo_m12.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.055439_7m64oy_pssm_count_matrices_logo_m12_rc.png
;
a 2792 2735 577 455 415 553 614 8397 8113 3267 2853
c 1803 1626 6960 7536 61 698 7587 217 180 1638 1601
g 1267 1492 575 106 90 6592 306 48 228 1553 1603
t 2970 2979 720 735 8266 989 325 170 311 2374 2775
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.055439_7m64oy_pssm_count_matrices_logo_m13.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.055439_7m64oy_pssm_count_matrices_logo_m13_rc.png
;
a 709 553 196 1458 93 47 1825 149 67 1818 1768 617 640
c 318 393 1400 113 36 1773 11 77 1759 54 19 481 394
g 283 365 100 88 119 42 9 1468 32 8 52 311 343
t 591 590 205 242 1653 39 56 207 43 21 62 492 524
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.055439_7m64oy_pssm_count_matrices_logo_m14.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.055439_7m64oy_pssm_count_matrices_logo_m14_rc.png
;
a 535 474 0 1547 0 0 0 1547 527 522
c 268 245 1547 0 0 1547 1547 0 294 345
g 289 405 0 0 1547 0 0 0 252 268
t 455 423 0 0 0 0 0 0 474 412
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.055439_7m64oy_pssm_count_matrices_logo_m15.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.055439_7m64oy_pssm_count_matrices_logo_m15_rc.png
;
a 648 610 320 54 1715 64 1784 137 1768 1762 408 706 652
c 316 301 166 24 32 1683 10 78 22 16 986 362 376
g 297 268 190 21 23 44 3 1553 20 19 201 226 270
t 573 655 1158 1735 64 43 37 66 24 37 239 540 536
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.055439_7m64oy_pssm_count_matrices_logo_m16.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.055439_7m64oy_pssm_count_matrices_logo_m16_rc.png
;
a 658 602 1638 1665 138 179 113 77 1655 1658 95 680 651
c 275 307 42 8 51 1342 18 75 48 11 36 377 255
g 316 591 42 45 1498 75 12 1559 30 48 1572 294 263
t 514 263 41 45 76 167 1620 52 30 46 60 412 594
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.055439_7m64oy_pssm_count_matrices_logo_m17.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.055439_7m64oy_pssm_count_matrices_logo_m17_rc.png
;
a 2529 2482 519 5471 5408 494 1825 5352 661 5153 1223 382 2672 2501
c 878 566 297 212 56 173 3355 112 224 337 100 263 934 796
g 1050 1203 4980 195 193 5032 509 118 4785 171 328 4943 1252 1071
t 1575 1781 236 154 375 333 343 450 362 371 4381 444 1174 1664
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.055439_7m64oy_pssm_count_matrices_logo_m18.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.055439_7m64oy_pssm_count_matrices_logo_m18_rc.png
;
a 5401 5281 1438 2077 13913 1923 13854 13974 13733 5485 5289
c 2808 2598 11469 11626 130 978 415 213 293 2770 2538
g 2267 2399 826 346 157 11010 257 320 376 2679 2819
t 4338 4536 1081 765 614 903 288 307 412 3880 4168
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.055439_7m64oy_pssm_count_matrices_logo_m19.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.055439_7m64oy_pssm_count_matrices_logo_m19_rc.png
;
a 490 528 1187 97 60 130 1295 89 92 1292 1251 492 449
c 262 236 62 13 32 1138 9 33 1197 33 17 282 236
g 230 271 35 32 1195 32 4 1141 43 7 55 254 270
t 376 323 74 1216 71 58 50 95 26 26 35 330 403
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.055439_7m64oy_pssm_count_matrices_logo_m20.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.055439_7m64oy_pssm_count_matrices_logo_m20_rc.png
;
; Host name rsat
; Job started 2025-05-23.055539
; Job done 2025-05-23.055549
; Seconds 1.31
; user 1.31
; system 0.35
; cuser 7.01
; csystem 0.88