; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/23/oligo-analysis_2025-05-23.115919_y8y1KY_pssm_count_matrices.tf -from tf -to tab -return counts -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2025/05/23/oligo-analysis_2025-05-23.115919_y8y1KY_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2025/05/23/oligo-analysis_2025-05-23.115919_y8y1KY_pssm_count_matrices_links.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/05/23/oligo-analysis_2025-05-23.115919_y8y1KY_pssm_count_matrices.tf
; Input format        	tf
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/05/23/oligo-analysis_2025-05-23.115919_y8y1KY_pssm_count_matrices_links.txt
; Output format       	tab
; pseudo-weight       	1
a	198	180	109	155	110	86	68	82	57	446	89	465	503	143	501	502	493	465	411	218	370	259	255
c	77	76	66	180	59	32	25	18	43	17	27	31	15	28	28	29	22	23	42	68	38	71	79
g	68	77	35	67	42	30	31	29	33	37	24	31	14	27	27	17	26	30	51	162	78	69	80
t	263	273	396	204	395	458	482	477	473	106	466	79	74	408	50	58	65	88	102	158	120	207	192
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.115919_y8y1KY_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.115919_y8y1KY_pssm_count_matrices_logo_m1_rc.png
;
a	113	115	65	91	53	61	35	46	52	269	52	104	269	329	327	118	303	324	325	300	263	131	231	161	160
c	53	37	35	90	26	23	15	15	14	10	13	36	26	8	8	12	15	8	11	23	26	51	35	45	50
g	28	50	43	48	22	24	14	18	24	19	23	148	31	9	12	19	25	16	20	23	36	98	44	51	53
t	189	181	240	154	282	275	319	304	293	85	295	95	57	37	36	234	40	35	27	37	58	103	73	126	120
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.115919_y8y1KY_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.115919_y8y1KY_pssm_count_matrices_logo_m2_rc.png
;
a	24	29	22	17	12	12	7	9	7	40	12	10	11	26	45	59	56	67	41	72	69	73	24	68	70	67	54	57	34	44	29	30
c	7	5	8	21	7	6	3	3	2	5	5	4	8	21	13	5	4	6	18	2	1	1	6	2	4	4	9	7	13	8	14	10
g	9	12	7	13	4	5	4	2	4	3	2	2	4	11	6	5	4	3	4	5	3	4	6	4	2	2	3	9	16	9	3	5
t	42	36	45	31	59	59	68	68	69	34	63	66	59	24	18	13	18	6	19	3	9	4	46	8	6	9	16	9	19	21	36	37
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.115919_y8y1KY_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.115919_y8y1KY_pssm_count_matrices_logo_m3_rc.png
;
a	131	143	92	95	67	43	19	41	28	267	34	45	85	334	86	325	321	341	312	266	175	256	188	174
c	63	46	34	105	42	23	14	12	28	19	11	25	159	23	23	21	26	14	21	38	49	30	45	44
g	36	58	34	45	23	20	8	18	21	18	8	26	45	16	12	20	15	20	25	39	92	34	44	67
t	176	159	246	161	274	320	365	335	329	102	353	310	117	33	285	40	44	31	48	63	90	86	129	121
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.115919_y8y1KY_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.115919_y8y1KY_pssm_count_matrices_logo_m4_rc.png
;
a	177	177	116	127	97	67	42	56	51	362	54	88	374	449	116	425	445	456	421	361	212	325	234	238
c	83	64	56	142	46	30	29	18	35	30	21	37	45	20	36	33	25	17	26	40	63	47	69	46
g	46	69	47	63	40	26	17	25	33	36	20	45	37	21	30	35	18	29	30	46	142	56	64	83
t	238	234	325	212	361	421	456	445	425	116	449	374	88	54	362	51	56	42	67	97	127	116	177	177
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.115919_y8y1KY_pssm_count_matrices_logo_m5.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.115919_y8y1KY_pssm_count_matrices_logo_m5_rc.png
;
a	218	227	142	191	103	127	59	96	57	522	85	558	113	566	540	577	485	475	228	395	286	287
c	110	92	77	191	63	33	25	19	27	16	25	16	33	34	29	23	39	43	74	70	79	69
g	69	79	70	74	43	39	23	29	34	33	16	25	16	27	19	25	33	63	191	77	92	110
t	287	286	395	228	475	485	577	540	566	113	558	85	522	57	96	59	127	103	191	142	227	218
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.115919_y8y1KY_pssm_count_matrices_logo_m6.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.115919_y8y1KY_pssm_count_matrices_logo_m6_rc.png
;
a	47	47	33	39	20	15	13	16	14	84	18	16	78	81	79	33	78	106	36	102	30	98	96	88	86	81	44	66	52	51
c	11	15	14	29	11	4	5	1	11	5	5	6	6	11	7	5	7	1	2	3	8	7	6	8	3	7	14	18	14	16
g	15	9	12	10	6	9	4	8	6	6	3	8	5	9	6	4	11	4	9	10	5	5	4	7	9	12	33	8	10	11
t	48	50	62	43	84	93	99	96	90	26	95	91	32	20	29	79	25	10	74	6	78	11	15	18	23	21	30	29	45	43
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.115919_y8y1KY_pssm_count_matrices_logo_m7.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.115919_y8y1KY_pssm_count_matrices_logo_m7_rc.png
;
a	488	572	300	999	294	394	1195	1313	182	1254	1285	1204	1117	1057	465	958	600	600
c	181	157	109	73	105	500	66	28	48	43	38	43	64	62	149	93	182	170
g	164	150	86	69	86	181	36	17	45	56	26	34	76	105	433	122	160	194
t	594	548	932	286	942	352	130	69	1152	74	78	146	170	203	380	254	485	463
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.115919_y8y1KY_pssm_count_matrices_logo_m8.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.115919_y8y1KY_pssm_count_matrices_logo_m8_rc.png
;
a	663	731	1177	1231	493	647	1413	1530	409	1449	1483	1448	1285	1240	686	1111	751	770
c	188	199	109	75	109	524	61	13	50	53	33	50	64	68	173	115	218	199
g	188	191	86	62	115	161	38	18	65	51	28	34	71	95	436	114	156	195
t	584	502	251	255	906	291	111	62	1099	70	79	91	203	220	328	283	498	459
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.115919_y8y1KY_pssm_count_matrices_logo_m9.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.115919_y8y1KY_pssm_count_matrices_logo_m9_rc.png
;
a	85	93	67	73	46	29	32	33	35	184	38	46	178	103	200	218	234	90	225	241	242	217	202	108	168	115	124
c	36	27	34	68	14	14	6	11	14	15	13	19	23	75	29	16	11	14	13	11	9	15	16	33	29	34	31
g	31	32	20	29	18	17	7	11	17	12	12	21	25	23	15	9	9	20	10	7	8	13	21	73	27	25	42
t	128	128	159	110	202	220	235	225	214	69	217	194	54	79	36	37	26	156	32	21	21	35	41	66	56	106	83
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.115919_y8y1KY_pssm_count_matrices_logo_m10.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.115919_y8y1KY_pssm_count_matrices_logo_m10_rc.png
;
a	694	661	449	1189	387	626	1697	228	1637	1689	1553	1635	1416	591	1259	847	801
c	206	189	134	116	139	660	33	48	49	41	56	66	94	258	134	227	218
g	201	199	141	119	114	172	20	59	61	23	30	37	112	521	162	209	236
t	756	808	1133	433	1217	399	107	1522	110	104	218	119	235	487	302	574	602
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.115919_y8y1KY_pssm_count_matrices_logo_m11.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.115919_y8y1KY_pssm_count_matrices_logo_m11_rc.png
;
a	650	659	552	1127	1129	565	1180	1259	1298	486	1275	1274	1282	1200	1100	612	905	671	675
c	144	150	142	78	60	461	81	43	32	56	41	38	36	42	58	158	111	172	183
g	148	150	93	57	60	130	42	28	34	60	48	41	39	42	85	324	128	163	149
t	482	465	637	162	175	268	121	94	60	822	60	71	67	140	181	330	280	418	417
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.115919_y8y1KY_pssm_count_matrices_logo_m12.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.115919_y8y1KY_pssm_count_matrices_logo_m12_rc.png
;
a	762	848	1266	683	1384	798	1429	1655	1714	596	1690	1678	1589	1594	1444	816	1285	900	873
c	182	205	127	158	111	518	106	46	32	75	50	41	59	62	75	181	123	213	206
g	216	206	123	107	114	128	78	28	34	69	54	47	43	54	96	394	135	206	215
t	697	598	341	909	248	413	244	128	77	1117	63	91	166	147	242	466	314	538	563
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.115919_y8y1KY_pssm_count_matrices_logo_m13.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.115919_y8y1KY_pssm_count_matrices_logo_m13_rc.png
;
a	70	65	42	55	43	28	28	38	27	115	104	122	32	34	124	33	33	138	140	37	133	146	149	134	119	65	110	81	86
c	25	20	18	50	15	14	14	7	8	13	16	10	9	8	9	4	8	6	6	8	11	4	8	8	12	27	17	12	16
g	21	21	16	22	15	14	16	15	11	8	10	4	8	7	6	8	12	13	5	8	9	5	2	8	14	37	15	16	19
t	62	72	102	51	105	122	120	118	132	42	48	42	129	129	39	133	125	21	27	125	25	23	19	28	33	49	36	69	57
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.115919_y8y1KY_pssm_count_matrices_logo_m14.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.115919_y8y1KY_pssm_count_matrices_logo_m14_rc.png
;
a	891	959	1248	764	1570	1801	1852	623	1781	1837	1819	1713	1528	850	1280	928	933
c	218	214	128	212	105	39	27	60	50	32	41	52	63	201	150	228	238
g	217	200	158	590	112	34	35	74	79	41	42	58	111	524	181	215	247
t	653	606	445	413	192	105	65	1222	69	69	77	156	277	404	368	608	561
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.115919_y8y1KY_pssm_count_matrices_logo_m15.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.115919_y8y1KY_pssm_count_matrices_logo_m15_rc.png
;
a	45	53	30	31	30	20	15	18	19	89	20	8	93	84	91	24	29	39	111	26	103	96	105	95	88	40	65	51	40
c	19	15	12	34	11	4	4	9	6	9	5	5	5	11	3	11	10	50	1	6	7	6	8	12	11	25	18	12	14
g	17	11	12	22	6	11	11	8	8	6	1	10	11	7	5	2	5	12	3	10	4	6	6	5	13	18	11	14	20
t	48	50	75	42	82	94	99	94	96	25	103	106	20	27	30	92	85	28	14	87	15	21	10	17	17	46	35	52	55
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.115919_y8y1KY_pssm_count_matrices_logo_m16.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.115919_y8y1KY_pssm_count_matrices_logo_m16_rc.png
;
a	92	96	0	0	0	0	258	258	99	94
c	35	32	0	0	0	258	0	0	31	37
g	37	31	0	0	258	0	0	0	32	35
t	94	99	258	258	0	0	0	0	96	92
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.115919_y8y1KY_pssm_count_matrices_logo_m17.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.115919_y8y1KY_pssm_count_matrices_logo_m17_rc.png
;
; Host name	rsat
; Job started	2025-05-23.115938
; Job done	2025-05-23.115944
; Seconds	0.55
;	user	0.55
;	system	0.18
;	cuser	5.29
;	csystem	0.68