; convert-matrix -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/23/oligo-analysis_2025-05-23.120109_O1r3ha_pssm_count_matrices.tf -from tf -to tab -return counts -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2025/05/23/oligo-analysis_2025-05-23.120109_O1r3ha_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2025/05/23/oligo-analysis_2025-05-23.120109_O1r3ha_pssm_count_matrices_links.txt
; Input files
; input /var/www/html/rsat/public_html/tmp/www-data/2025/05/23/oligo-analysis_2025-05-23.120109_O1r3ha_pssm_count_matrices.tf
; Input format tf
; Output files
; output /var/www/html/rsat/public_html/tmp/www-data/2025/05/23/oligo-analysis_2025-05-23.120109_O1r3ha_pssm_count_matrices_links.txt
; Output format tab
; pseudo-weight 1
a 3 2 2 1 0 0 3 1 3 1 4 4 1 0 3 2 0 4 1 2 1 4 0 2 0 3 2 2 0 3 3 3 1 1 1
c 0 0 0 1 0 0 0 0 1 0 0 0 0 1 0 2 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1
g 1 0 0 1 0 0 0 0 0 0 0 0 0 1 1 0 1 0 0 0 1 0 0 1 0 0 1 0 1 0 1 0 0 0 0
t 0 2 2 1 4 4 1 3 0 3 0 0 3 2 0 0 3 0 3 1 1 0 4 1 4 1 1 2 3 1 0 1 3 3 2
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120109_O1r3ha_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120109_O1r3ha_pssm_count_matrices_logo_m1_rc.png
;
a 56 44 113 16 35 9 123 16 129 14 121 25 118 22 130 101 122 21 59 45
c 20 20 9 5 8 9 5 8 6 5 7 55 3 13 3 2 7 11 19 20
g 24 16 6 5 3 5 2 7 3 7 7 9 4 60 4 5 6 4 20 21
t 45 65 17 119 99 122 15 114 7 119 10 56 20 50 8 37 10 109 47 59
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120109_O1r3ha_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120109_O1r3ha_pssm_count_matrices_logo_m2_rc.png
;
a 102 87 202 49 43 29 218 27 189 34 191 205 24 52 209 197 212 25 86 73
c 34 50 19 12 18 23 10 11 21 13 17 10 6 20 15 7 11 19 36 35
g 39 35 13 14 12 15 10 11 21 11 18 10 12 140 13 15 13 11 42 40
t 87 90 28 187 189 195 24 213 31 204 36 37 220 50 25 43 26 207 98 114
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120109_O1r3ha_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120109_O1r3ha_pssm_count_matrices_logo_m3_rc.png
;
a 117 117 0 311 0 0 311 137 126
c 30 30 311 0 0 0 0 33 48
g 43 66 0 0 311 0 0 38 26
t 121 98 0 0 0 311 0 103 111
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120109_O1r3ha_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120109_O1r3ha_pssm_count_matrices_logo_m4_rc.png
;
a 2 3 13 2 2 0 10 3 2 5 9 9 1 11 1 14 0 2 2 10 4 7 0 3 10 8 4 1
c 1 4 0 0 2 1 0 2 0 5 1 0 0 0 1 0 1 0 3 1 0 1 0 6 1 2 2 2
g 2 3 1 1 1 0 2 0 2 2 0 1 2 2 0 0 1 1 8 0 0 1 0 1 2 0 2 1
t 9 4 0 11 9 13 2 9 10 2 4 4 11 1 12 0 12 11 1 3 10 5 14 4 1 4 6 10
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120109_O1r3ha_pssm_count_matrices_logo_m5.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120109_O1r3ha_pssm_count_matrices_logo_m5_rc.png
;
a 1 3 5 2 3 4 5 5 0 6 1 6 0 2 0 6 1 4 1 0 4 5 2 3 6 5 1 4 4 5 2 0 2
c 3 1 0 0 0 1 0 1 1 0 0 0 1 0 0 0 1 0 0 2 1 0 0 2 0 1 0 1 0 1 0 0 2
g 1 1 0 3 2 0 1 0 1 0 0 0 0 1 4 0 0 1 1 0 0 0 0 1 0 0 1 0 0 0 0 3 1
t 1 1 1 1 1 1 0 0 4 0 5 0 5 3 2 0 4 1 4 4 1 1 4 0 0 0 4 1 2 0 4 3 1
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120109_O1r3ha_pssm_count_matrices_logo_m6.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120109_O1r3ha_pssm_count_matrices_logo_m6_rc.png
;
a 4 6 8 3 1 3 12 2 10 10 1 12 0 9 1 4 1 9 0 10 0 5 5 7 2 8 7 8 2 5 4
c 0 2 2 1 1 1 0 1 1 1 0 0 1 0 0 1 1 2 0 1 0 3 2 0 2 0 0 3 0 3 2
g 2 0 1 1 1 3 0 1 1 1 1 0 0 1 0 0 5 0 1 1 1 2 0 2 0 1 0 0 0 2 0
t 6 4 1 7 9 5 0 8 0 0 10 0 11 2 11 7 5 1 11 0 11 2 5 3 8 3 5 1 10 2 6
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120109_O1r3ha_pssm_count_matrices_logo_m7.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120109_O1r3ha_pssm_count_matrices_logo_m7_rc.png
;
a 29 26 59 68 16 26 66 65 12 66 11 66 8 25 66 20 4 58 9 55 51 58 12 29 22
c 16 17 9 4 3 41 6 2 7 2 8 3 6 30 4 1 6 4 5 10 6 2 4 12 13
g 15 12 1 3 2 5 1 2 2 3 7 4 5 8 0 2 6 5 8 2 1 4 3 14 9
t 20 25 11 5 59 8 7 11 59 9 54 7 61 17 10 57 64 13 58 13 22 16 61 25 36
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120109_O1r3ha_pssm_count_matrices_logo_m8.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120109_O1r3ha_pssm_count_matrices_logo_m8_rc.png
;
a 18 11 26 8 9 3 28 5 28 3 23 27 3 10 2 28 2 22 4 27 9 24 26 24 9 11 7
c 5 5 2 1 5 2 1 1 2 2 1 0 3 2 3 2 2 3 16 2 1 2 2 2 4 3 3
g 5 3 5 2 0 2 3 1 0 0 4 4 1 17 1 0 2 5 3 1 14 1 3 3 1 6 5
t 7 16 2 24 21 28 3 28 5 30 7 4 28 6 29 5 29 5 12 5 11 8 4 6 21 15 20
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120109_O1r3ha_pssm_count_matrices_logo_m9.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120109_O1r3ha_pssm_count_matrices_logo_m9_rc.png
;
a 840 906 1973 1909 241 2012 2029 1989 230 724 760
c 316 393 54 21 108 58 29 58 65 331 349
g 354 371 79 42 1577 45 43 48 77 429 360
t 683 523 87 221 267 78 92 98 1821 709 724
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120109_O1r3ha_pssm_count_matrices_logo_m10.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120109_O1r3ha_pssm_count_matrices_logo_m10_rc.png
;
a 95 109 65 30 29 45 238 33 42 210 27 233 28 233 192 239 44 98 101
c 47 41 132 14 13 181 13 9 19 19 19 17 15 11 17 11 21 49 52
g 42 47 21 7 16 24 11 7 19 17 12 13 14 24 18 12 18 47 34
t 109 96 75 242 235 43 31 244 213 47 235 30 236 25 66 31 210 99 106
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120109_O1r3ha_pssm_count_matrices_logo_m11.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120109_O1r3ha_pssm_count_matrices_logo_m11_rc.png
;
a 0 0 1 0 0 1 1 0 0 0 1 1 0 1 0 1 0 0 0 1 0 0 0 0 1 0 0 1 1 1 0 0 1
c 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0
g 0 1 0 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 1 0 0 0 0 0 0
t 1 0 0 1 0 0 0 0 0 1 0 0 1 0 1 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 1 1 0
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120109_O1r3ha_pssm_count_matrices_logo_m12.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120109_O1r3ha_pssm_count_matrices_logo_m12_rc.png
;
a 252 261 676 0 676 0 676 301 262
c 98 110 0 0 0 0 0 70 92
g 99 69 0 0 0 676 0 80 129
t 227 236 0 676 0 0 0 225 193
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120109_O1r3ha_pssm_count_matrices_logo_m13.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120109_O1r3ha_pssm_count_matrices_logo_m13_rc.png
;
a 5 2 5 3 1 5 7 3 2 4 10 1 10 0 4 6 10 1 10 1 6 1 2 1 8 0 7 6 7 2 4 2
c 0 1 2 0 1 0 1 0 1 0 0 2 0 0 3 1 0 0 0 0 2 1 0 3 0 0 0 0 0 2 0 0
g 2 1 2 0 1 0 1 0 1 4 0 1 0 1 0 0 0 0 0 1 1 0 1 4 0 2 1 1 1 1 2 0
t 3 6 1 7 7 5 1 7 6 2 0 6 0 9 3 3 0 9 0 8 1 8 7 2 2 8 2 3 2 5 4 8
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120109_O1r3ha_pssm_count_matrices_logo_m14.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120109_O1r3ha_pssm_count_matrices_logo_m14_rc.png
;
a 6 4 7 5 2 7 10 4 2 4 13 2 13 1 4 9 14 2 14 1 7 1 3 1 10 1 10 8 10 2 5 4
c 0 2 3 0 1 0 1 0 2 0 0 3 1 0 4 1 0 1 0 0 2 1 0 7 0 0 1 1 1 2 0 0
g 4 1 2 0 1 0 1 0 2 8 0 1 0 1 1 1 0 1 0 2 1 0 1 4 0 2 1 1 1 1 3 1
t 4 7 2 9 10 7 2 10 8 2 1 8 0 12 5 3 0 10 0 11 4 12 10 2 4 11 2 4 2 9 6 9
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120109_O1r3ha_pssm_count_matrices_logo_m15.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120109_O1r3ha_pssm_count_matrices_logo_m15_rc.png
;
a 0 0 0 1 1 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 0 0 0 1 1 0 1 0 1 0 0 1
c 0 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0
g 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 1 0 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 1 0
t 1 1 0 0 0 0 0 0 0 0 1 1 1 0 0 1 0 0 0 1 0 1 1 0 0 0 1 1 0 0 0 1 0 1 0 1 0 0
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120109_O1r3ha_pssm_count_matrices_logo_m16.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120109_O1r3ha_pssm_count_matrices_logo_m16_rc.png
;
a 226 235 408 364 86 597 68 576 589 592 43 213 223
c 84 101 63 61 440 9 24 23 13 10 13 90 94
g 96 105 58 76 49 3 471 6 8 12 18 102 101
t 223 188 100 128 54 20 66 24 19 15 555 224 211
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120109_O1r3ha_pssm_count_matrices_logo_m17.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120109_O1r3ha_pssm_count_matrices_logo_m17_rc.png
;
; Host name rsat
; Job started 2025-05-23.120126
; Job done 2025-05-23.120132
; Seconds 0.28
; user 0.28
; system 0.18
; cuser 4.36
; csystem 0.66