; convert-matrix -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/23/oligo-analysis_2025-05-23.120303_fM2Tzj_pssm_count_matrices.tf -from tf -to tab -return counts -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2025/05/23/oligo-analysis_2025-05-23.120303_fM2Tzj_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2025/05/23/oligo-analysis_2025-05-23.120303_fM2Tzj_pssm_count_matrices_links.txt
; Input files
; input /var/www/html/rsat/public_html/tmp/www-data/2025/05/23/oligo-analysis_2025-05-23.120303_fM2Tzj_pssm_count_matrices.tf
; Input format tf
; Output files
; output /var/www/html/rsat/public_html/tmp/www-data/2025/05/23/oligo-analysis_2025-05-23.120303_fM2Tzj_pssm_count_matrices_links.txt
; Output format tab
; pseudo-weight 1
a 69 73 37 133 28 16 14 24 161 4 14 22 161 12 25 110 53 71 70
c 34 33 13 18 14 6 18 122 3 4 6 125 6 4 15 21 71 34 31
g 33 15 12 8 11 10 102 9 2 6 6 11 2 5 19 12 21 14 23
t 48 63 122 25 131 152 50 29 18 170 158 26 15 163 125 41 39 65 60
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120303_fM2Tzj_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120303_fM2Tzj_pssm_count_matrices_logo_m1_rc.png
;
a 7 14 7 17 4 2 3 6 14 4 1 0 8 1 4 19 21 2 6 4 19 17 5 15 6 10
c 1 2 1 0 1 1 2 9 4 0 1 2 15 0 0 0 0 0 0 10 2 1 2 2 4 3
g 4 5 3 3 3 0 12 2 0 1 1 3 1 0 16 2 1 2 11 6 0 3 1 0 1 5
t 12 3 13 4 16 21 7 7 6 19 21 19 0 23 4 3 2 20 7 4 3 3 16 7 13 6
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120303_fM2Tzj_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120303_fM2Tzj_pssm_count_matrices_logo_m2_rc.png
;
a 1 4 5 5 2 2 2 3 6 2 2 1 2 0 2 6 5 0 1 7 7 8 0 2 0 7 5 2 5 4 4
c 1 2 0 1 1 0 1 3 1 1 1 1 5 1 1 0 0 0 0 1 0 0 0 0 4 0 1 2 0 2 1
g 3 1 0 2 1 1 4 1 1 0 1 0 1 0 5 0 1 1 5 0 0 0 0 4 1 0 0 0 1 0 2
t 3 1 3 0 4 5 1 1 0 5 4 6 0 7 0 2 2 7 2 0 1 0 8 2 3 1 2 4 2 2 1
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120303_fM2Tzj_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120303_fM2Tzj_pssm_count_matrices_logo_m3_rc.png
;
a 156 119 153 354 345 36 40 365 359 34 338 154 149
c 58 66 79 7 6 14 307 6 1 19 8 51 55
g 49 57 77 13 6 295 17 0 7 10 13 62 66
t 117 138 71 6 23 35 16 9 13 317 21 113 110
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120303_fM2Tzj_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120303_fM2Tzj_pssm_count_matrices_logo_m4_rc.png
;
a 13 12 7 11 38 40 8 5 8 41 42 4 2 14 41 38 3 39 14 14
c 3 3 2 3 2 3 0 2 3 2 0 0 6 25 1 2 2 0 7 7
g 14 14 27 3 2 2 1 36 31 0 0 0 31 6 1 2 4 0 11 7
t 17 18 11 30 5 2 38 4 5 4 5 43 8 2 4 5 38 8 15 19
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120303_fM2Tzj_pssm_count_matrices_logo_m5.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120303_fM2Tzj_pssm_count_matrices_logo_m5_rc.png
;
a 315 314 718 718 711 82 141 733 711 715 314 260
c 101 132 18 15 1 38 531 19 11 22 107 142
g 118 161 19 15 22 586 63 4 20 13 109 132
t 234 161 13 20 34 62 33 12 26 18 238 234
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120303_fM2Tzj_pssm_count_matrices_logo_m6.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120303_fM2Tzj_pssm_count_matrices_logo_m6_rc.png
;
a 49 61 36 110 28 23 26 24 139 7 1 8 144 23 28 101 60 59
c 27 21 16 15 8 7 16 92 4 1 7 133 3 9 18 14 25 23
g 31 27 7 4 3 12 75 12 2 1 5 3 3 90 12 10 26 16
t 49 47 97 27 117 114 39 28 11 147 143 12 6 34 98 31 45 58
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120303_fM2Tzj_pssm_count_matrices_logo_m7.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120303_fM2Tzj_pssm_count_matrices_logo_m7_rc.png
;
a 65 58 126 123 31 12 12 161 159 11 29 38 126 126 34 110 49 48
c 17 23 10 13 96 2 4 3 2 2 15 82 15 6 8 10 31 23
g 26 31 14 7 9 7 139 3 2 2 89 22 6 8 16 18 30 28
t 61 57 19 26 33 148 14 2 6 154 36 27 22 29 111 31 59 70
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120303_fM2Tzj_pssm_count_matrices_logo_m8.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120303_fM2Tzj_pssm_count_matrices_logo_m8_rc.png
;
a 6 5 2 6 1 2 2 3 10 4 0 0 2 2 2 10 11 1 4 8 9 7 3 3 3
c 0 3 3 0 0 0 1 5 0 0 1 0 8 0 1 0 0 0 0 1 1 0 6 0 0
g 1 2 0 3 0 1 5 2 0 1 1 1 1 1 7 0 0 1 5 0 1 3 0 0 1
t 4 1 6 2 10 8 3 1 1 6 9 10 0 8 1 1 0 9 2 2 0 1 2 8 7
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120303_fM2Tzj_pssm_count_matrices_logo_m9.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120303_fM2Tzj_pssm_count_matrices_logo_m9_rc.png
;
a 111 129 85 241 61 36 42 60 312 13 9 34 300 233 64 217 122 128
c 59 56 29 34 14 10 38 208 7 1 6 237 26 21 26 23 58 58
g 56 51 26 21 11 24 178 27 5 3 14 27 2 20 37 25 53 39
t 119 109 205 49 259 275 87 50 21 328 316 47 17 71 218 80 112 120
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120303_fM2Tzj_pssm_count_matrices_logo_m10.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120303_fM2Tzj_pssm_count_matrices_logo_m10_rc.png
;
a 65 60 20 188 20 21 204 195 19 194 81 90
c 28 35 168 1 7 168 1 3 7 2 20 30
g 22 42 13 3 159 6 0 2 1 3 37 29
t 92 70 6 15 21 12 2 7 180 8 69 58
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120303_fM2Tzj_pssm_count_matrices_logo_m11.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120303_fM2Tzj_pssm_count_matrices_logo_m11_rc.png
;
a 69 62 43 43 154 153 34 29 42 182 193 15 21 178 182 30 129 86 72
c 25 21 15 22 10 15 2 7 16 9 3 1 16 9 10 6 16 18 26
g 27 39 102 29 19 9 14 144 130 8 5 14 151 13 7 11 29 36 43
t 92 91 53 119 30 36 163 33 25 14 12 183 25 13 14 166 39 73 72
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120303_fM2Tzj_pssm_count_matrices_logo_m12.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120303_fM2Tzj_pssm_count_matrices_logo_m12_rc.png
;
a 4 4 6 0 3 0 1 0 0 1 7 1 1 1 6 4 5 5 6 0 0 1 5 3 1 3 3 2
c 0 1 0 0 3 0 0 2 1 6 0 0 0 3 0 0 1 2 0 0 2 4 2 0 2 0 1 1
g 0 1 0 0 0 0 3 1 0 0 0 1 0 0 1 3 0 0 0 1 4 1 0 0 0 1 1 1
t 3 1 1 7 1 7 3 4 6 0 0 5 6 3 0 0 1 0 1 6 1 1 0 4 4 3 2 3
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120303_fM2Tzj_pssm_count_matrices_logo_m13.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120303_fM2Tzj_pssm_count_matrices_logo_m13_rc.png
;
a 113 92 27 233 60 14 23 31 263 258 29 248 109 100
c 44 41 12 11 178 3 15 223 13 6 9 6 41 51
g 43 45 10 14 10 4 227 16 4 7 7 12 33 38
t 98 120 249 40 50 277 33 28 18 27 253 32 115 109
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120303_fM2Tzj_pssm_count_matrices_logo_m14.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120303_fM2Tzj_pssm_count_matrices_logo_m14_rc.png
;
a 73 64 65 159 156 8 10 163 20 19 152 77 71
c 25 17 34 2 1 5 146 1 1 12 2 18 14
g 23 28 33 3 4 146 7 1 135 5 6 37 24
t 48 60 37 5 8 10 6 4 13 133 9 37 60
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120303_fM2Tzj_pssm_count_matrices_logo_m15.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120303_fM2Tzj_pssm_count_matrices_logo_m15_rc.png
;
a 49 50 19 105 19 4 9 21 101 7 5 10 21 15 22 13 84 47 49
c 17 18 8 8 8 2 21 82 5 9 5 13 73 5 11 5 7 18 27
g 19 21 5 2 3 2 75 11 10 4 1 2 8 1 61 7 15 18 6
t 44 40 97 14 99 121 24 15 13 109 118 104 27 108 35 104 23 46 47
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120303_fM2Tzj_pssm_count_matrices_logo_m16.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120303_fM2Tzj_pssm_count_matrices_logo_m16_rc.png
;
a 26 32 13 52 15 14 66 15 74 70 70 7 9 20 68 67 11 55 32 30
c 8 7 13 10 5 51 1 2 1 3 1 1 6 46 5 2 4 5 13 16
g 18 13 8 7 5 8 2 54 0 3 0 5 51 10 1 5 6 5 9 9
t 29 29 47 12 56 8 12 10 6 5 10 68 15 5 7 7 60 16 27 26
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120303_fM2Tzj_pssm_count_matrices_logo_m17.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120303_fM2Tzj_pssm_count_matrices_logo_m17_rc.png
;
a 22 23 11 58 59 19 58 12 57 58 61 9 7 14 62 52 9 49 20 21
c 13 4 6 4 1 35 0 4 3 3 2 5 7 47 4 2 2 4 12 11
g 11 13 6 1 1 7 5 48 3 4 2 2 39 4 2 4 6 8 11 9
t 23 29 46 6 8 8 6 5 6 4 4 53 16 4 1 11 52 8 26 28
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120303_fM2Tzj_pssm_count_matrices_logo_m18.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120303_fM2Tzj_pssm_count_matrices_logo_m18_rc.png
;
a 180 223 39 511 18 59 558 544 27 515 235 275
c 76 77 21 17 16 423 5 6 10 21 78 85
g 80 80 20 11 6 45 6 10 7 24 71 73
t 251 207 507 48 547 60 18 27 543 27 203 154
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120303_fM2Tzj_pssm_count_matrices_logo_m19.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120303_fM2Tzj_pssm_count_matrices_logo_m19_rc.png
;
; Host name rsat
; Job started 2025-05-23.120318
; Job done 2025-05-23.120324
; Seconds 0.32
; user 0.32
; system 0.14
; cuser 4.79
; csystem 0.72