; convert-matrix  -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/23/oligo-analysis_2025-05-23.120541_yIZTBM_pssm_count_matrices.tf -from tf -to tab -return counts -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2025/05/23/oligo-analysis_2025-05-23.120541_yIZTBM_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2025/05/23/oligo-analysis_2025-05-23.120541_yIZTBM_pssm_count_matrices_links.txt
; Input files
;	input	/var/www/html/rsat/public_html/tmp/www-data/2025/05/23/oligo-analysis_2025-05-23.120541_yIZTBM_pssm_count_matrices.tf
; Input format        	tf
; Output files
;	output	/var/www/html/rsat/public_html/tmp/www-data/2025/05/23/oligo-analysis_2025-05-23.120541_yIZTBM_pssm_count_matrices_links.txt
; Output format       	tab
; pseudo-weight       	1
a	70	74	123	30	19	23	37	32	31	18	136	27	159	162	41	170	173	186	62	172	176	166	53	74	76
c	29	30	10	9	10	14	87	10	5	8	19	12	14	10	13	16	8	3	17	10	8	10	26	32	21
g	26	30	19	14	11	12	19	9	9	14	21	20	14	13	24	10	6	6	93	9	8	9	14	35	34
t	88	79	61	160	173	164	70	162	168	173	37	154	26	28	135	17	26	18	41	22	21	28	120	72	82
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120541_yIZTBM_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120541_yIZTBM_pssm_count_matrices_logo_m1_rc.png
;
a	144	151	285	35	24	34	49	403	406	341	335	108	352	360	349	124	186	188
c	58	63	39	18	15	15	332	14	11	17	26	39	20	17	20	34	57	46
g	59	60	34	18	11	24	29	12	7	28	31	226	22	28	27	40	75	64
t	187	174	90	377	398	375	38	19	24	62	56	75	54	43	52	250	130	150
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120541_yIZTBM_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120541_yIZTBM_pssm_count_matrices_logo_m2_rc.png
;
a	508	520	310	1114	1066	171	1134	1159	185	254	1173	1148	1138	350	458	489
c	171	173	128	42	43	62	57	37	22	131	51	34	28	151	224	146
g	193	166	146	64	61	68	56	33	40	804	40	39	49	139	204	214
t	450	463	738	102	152	1021	75	93	1075	133	58	101	107	682	436	473
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120541_yIZTBM_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120541_yIZTBM_pssm_count_matrices_logo_m3_rc.png
;
a	70	66	105	30	23	21	38	19	17	17	138	20	34	44	140	143	137	133	52	158	148	144	44	65	65
c	25	31	16	12	9	7	81	4	6	13	12	13	9	99	16	12	11	11	23	6	9	11	19	24	25
g	29	30	19	7	10	5	13	2	9	11	6	6	7	13	11	10	11	16	87	8	12	12	14	22	27
t	62	59	46	137	144	153	54	161	154	145	30	147	136	30	19	21	27	26	24	14	17	19	109	75	69
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120541_yIZTBM_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120541_yIZTBM_pssm_count_matrices_logo_m4_rc.png
;
a	47	38	69	14	13	11	12	19	19	12	10	15	86	90	14	35	91	95	86	89	44	91	96	96	28	45	39
c	13	20	13	7	6	7	59	4	6	12	5	15	5	4	2	59	9	6	6	6	14	7	4	2	10	11	16
g	18	17	4	5	6	9	12	3	5	8	10	54	5	4	9	13	7	8	5	6	49	4	6	9	10	20	18
t	39	42	31	91	92	90	34	91	87	85	92	33	21	19	92	10	10	8	20	16	10	15	11	10	69	41	44
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120541_yIZTBM_pssm_count_matrices_logo_m5.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120541_yIZTBM_pssm_count_matrices_logo_m5_rc.png
;
a	131	109	254	39	46	40	83	39	27	33	325	47	40	65	330	316	315	68	159	153
c	63	60	42	17	21	27	189	13	22	31	19	16	8	41	20	13	15	27	63	40
g	57	62	27	17	13	15	35	8	15	18	13	10	19	233	17	19	19	30	74	71
t	157	177	85	335	328	326	101	348	344	326	51	335	341	69	41	60	59	283	112	144
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120541_yIZTBM_pssm_count_matrices_logo_m6.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120541_yIZTBM_pssm_count_matrices_logo_m6_rc.png
;
a	130	138	228	47	43	39	79	55	50	44	275	50	262	294	74	310	280	117	323	272	284	97	157	136
c	64	57	22	23	20	17	164	22	19	17	29	17	30	10	21	25	22	30	22	20	19	24	54	57
g	55	57	35	18	22	13	29	19	17	21	20	16	31	16	25	19	17	158	12	31	22	21	52	60
t	134	131	98	295	298	314	111	287	297	301	59	300	60	63	263	29	64	78	26	60	58	241	120	130
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120541_yIZTBM_pssm_count_matrices_logo_m7.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120541_yIZTBM_pssm_count_matrices_logo_m7_rc.png
;
a	41	38	66	15	16	15	14	16	21	16	18	21	95	94	97	32	90	103	101	98	43	97	95	98	32	46	39
c	22	22	11	7	4	6	57	6	9	5	5	9	4	4	2	51	14	6	2	3	16	9	11	5	14	12	19
g	13	10	7	8	4	10	10	3	6	8	7	64	11	8	9	16	6	9	6	10	55	5	5	6	11	24	15
t	46	52	38	92	98	91	41	97	86	93	92	28	12	16	14	23	12	4	13	11	8	11	11	13	65	40	49
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120541_yIZTBM_pssm_count_matrices_logo_m8.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120541_yIZTBM_pssm_count_matrices_logo_m8_rc.png
;
a	721	856	1913	1913	0	0	0	422	653
c	261	305	0	0	1913	0	0	318	252
g	331	279	0	0	0	0	0	339	256
t	600	473	0	0	0	1913	1913	834	752
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120541_yIZTBM_pssm_count_matrices_logo_m9.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120541_yIZTBM_pssm_count_matrices_logo_m9_rc.png
;
a	98	98	170	35	30	33	67	35	36	37	221	54	74	240	228	246	237	93	257	238	244	78	129	117
c	49	54	21	22	13	14	123	12	8	13	23	17	139	18	18	20	13	28	11	13	10	21	41	40
g	37	39	26	9	13	10	27	13	13	16	14	10	26	10	16	10	17	128	11	19	18	20	56	44
t	123	116	90	241	251	250	90	247	250	241	49	226	68	39	45	31	40	58	28	37	35	188	81	106
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120541_yIZTBM_pssm_count_matrices_logo_m10.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120541_yIZTBM_pssm_count_matrices_logo_m10_rc.png
;
a	59	68	158	21	18	20	37	27	36	181	171	171	167	48	178	168	170	48	89	90
c	28	39	10	7	8	8	114	13	122	7	7	8	10	15	7	10	7	12	22	23
g	24	27	7	7	7	12	19	6	21	7	6	12	7	115	7	12	8	13	46	23
t	98	75	34	174	176	169	39	163	30	14	25	18	25	31	17	19	24	136	52	73
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120541_yIZTBM_pssm_count_matrices_logo_m11.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120541_yIZTBM_pssm_count_matrices_logo_m11_rc.png
;
a	145	117	223	33	37	32	56	54	39	37	40	78	316	307	312	275	116	292	111	167	161
c	56	58	28	27	19	18	182	13	26	11	11	38	13	15	11	26	31	18	26	46	40
g	39	50	25	9	6	22	39	9	12	12	25	205	15	16	14	15	159	25	30	50	56
t	143	158	107	314	321	311	106	307	306	323	307	62	39	45	46	67	77	48	216	120	126
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120541_yIZTBM_pssm_count_matrices_logo_m12.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120541_yIZTBM_pssm_count_matrices_logo_m12_rc.png
;
a	195	162	121	59	32	61	462	463	438	416	84	442	422	432	123	215	208
c	67	81	236	8	17	363	14	8	17	23	55	28	18	18	42	77	62
g	62	62	47	9	23	45	15	18	24	28	302	20	29	22	44	84	80
t	199	218	119	447	451	54	32	34	44	56	82	33	54	51	314	147	173
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120541_yIZTBM_pssm_count_matrices_logo_m13.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120541_yIZTBM_pssm_count_matrices_logo_m13_rc.png
;
a	583	694	412	1604	78	140	1714	1702	1719	339	620	734
c	235	243	112	49	13	70	28	21	19	154	302	196
g	280	210	137	53	12	1514	26	29	23	121	319	257
t	715	666	1152	107	1710	89	45	61	52	1199	572	626
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120541_yIZTBM_pssm_count_matrices_logo_m14.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120541_yIZTBM_pssm_count_matrices_logo_m14_rc.png
;
a	780	730	333	1815	242	1857	1868	1861	123	675	731
c	281	293	1340	25	113	39	23	28	73	338	271
g	205	289	155	18	1453	27	26	28	43	344	286
t	705	659	143	113	163	48	54	54	1732	614	683
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120541_yIZTBM_pssm_count_matrices_logo_m15.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120541_yIZTBM_pssm_count_matrices_logo_m15_rc.png
;
a	323	353	237	709	687	236	741	740	793	758	156	779	744	747	190	316	354
c	104	84	83	35	35	379	39	28	17	22	71	30	26	30	56	143	101
g	132	119	395	49	51	101	32	45	24	31	555	26	39	26	53	147	117
t	302	305	146	68	88	145	49	48	27	50	79	26	52	58	562	255	289
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120541_yIZTBM_pssm_count_matrices_logo_m16.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120541_yIZTBM_pssm_count_matrices_logo_m16_rc.png
;
a	101	88	150	45	35	24	57	20	45	24	197	28	190	240	51	226	219	234	221	78	206	201	200	79	119	115
c	40	43	22	21	21	22	109	17	16	11	18	13	24	4	15	25	7	13	12	32	15	23	20	26	45	43
g	34	33	29	13	21	16	31	18	10	17	16	16	15	10	21	13	14	14	14	117	28	16	21	38	33	35
t	106	117	80	202	204	219	84	226	210	229	50	224	52	27	194	17	41	20	34	54	32	41	40	138	84	88
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120541_yIZTBM_pssm_count_matrices_logo_m17.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120541_yIZTBM_pssm_count_matrices_logo_m17_rc.png
;
a	139	122	212	39	43	27	72	45	42	54	23	46	259	28	26	298	43	30	149	130	138
c	39	51	34	23	19	19	202	13	22	20	11	54	31	11	14	22	13	17	57	52	51
g	52	56	33	16	15	16	33	12	10	17	16	183	21	10	15	15	8	17	54	62	50
t	157	158	108	309	310	325	80	317	313	296	337	104	76	338	332	52	323	323	127	143	148
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120541_yIZTBM_pssm_count_matrices_logo_m18.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120541_yIZTBM_pssm_count_matrices_logo_m18_rc.png
;
a	347	361	892	892	0	0	892	445	380
c	132	131	0	0	0	892	0	83	136
g	113	192	0	0	892	0	0	128	101
t	300	208	0	0	0	0	0	236	275
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120541_yIZTBM_pssm_count_matrices_logo_m19.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120541_yIZTBM_pssm_count_matrices_logo_m19_rc.png
;
a	665	670	296	100	103	1745	1729	1725	117	568	695
c	265	206	1142	25	124	25	13	19	55	334	212
g	240	254	113	18	1503	25	36	24	24	314	273
t	678	718	297	1705	118	53	70	80	1652	632	668
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120541_yIZTBM_pssm_count_matrices_logo_m20.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/23//oligo-analysis_2025-05-23.120541_yIZTBM_pssm_count_matrices_logo_m20_rc.png
;
; Host name	rsat
; Job started	2025-05-23.120555
; Job done	2025-05-23.120602
; Seconds	0.49
;	user	0.5
;	system	0.27
;	cuser	5.84
;	csystem	0.74