; convert-matrix -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/24/oligo-analysis_2025-05-24.194232_ydknbE_pssm_count_matrices.tf -from tf -to tab -return counts -return logo -logo_format png -logo_file $RSAT/public_html/tmp/www-data/2025/05/24/oligo-analysis_2025-05-24.194232_ydknbE_pssm_count_matrices_logo -o $RSAT/public_html/tmp/www-data/2025/05/24/oligo-analysis_2025-05-24.194232_ydknbE_pssm_count_matrices_links.txt
; Input files
; input /var/www/html/rsat/public_html/tmp/www-data/2025/05/24/oligo-analysis_2025-05-24.194232_ydknbE_pssm_count_matrices.tf
; Input format tf
; Output files
; output /var/www/html/rsat/public_html/tmp/www-data/2025/05/24/oligo-analysis_2025-05-24.194232_ydknbE_pssm_count_matrices_links.txt
; Output format tab
; pseudo-weight 1
a 229 91 33 120 26 23 471 87 60 431 55 91 118 22 9 474 112 25 285 95
c 50 67 408 247 25 416 19 11 354 16 29 382 31 14 438 12 59 383 89 121
g 46 154 45 14 79 15 8 329 48 45 391 10 7 35 42 6 266 42 40 125
t 183 196 22 127 378 54 10 81 46 16 33 25 352 437 19 16 71 58 94 167
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/24//oligo-analysis_2025-05-24.194232_ydknbE_pssm_count_matrices_logo_m1.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/24//oligo-analysis_2025-05-24.194232_ydknbE_pssm_count_matrices_logo_m1_rc.png
;
a 1033 691 139 2486 83 59 131 84 153 2499 733 697
c 457 398 89 83 33 2315 2404 73 108 51 430 692
g 454 727 2428 113 72 138 46 47 2302 114 478 646
t 836 964 124 98 2592 268 199 2576 217 116 1139 745
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/24//oligo-analysis_2025-05-24.194232_ydknbE_pssm_count_matrices_logo_m2.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/24//oligo-analysis_2025-05-24.194232_ydknbE_pssm_count_matrices_logo_m2_rc.png
;
a 540 625 125 42 1731 65 63 1837 98 41 796 508
c 441 382 55 1735 22 126 132 12 113 1613 393 295
g 466 309 35 78 50 1664 1636 38 1560 144 210 508
t 466 597 1698 58 110 58 82 26 142 115 514 602
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/24//oligo-analysis_2025-05-24.194232_ydknbE_pssm_count_matrices_logo_m3.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/24//oligo-analysis_2025-05-24.194232_ydknbE_pssm_count_matrices_logo_m3_rc.png
;
a 1822 1388 643 5095 173 157 239 189 200 108 326 4755 1682 1349
c 1139 780 631 65 156 4916 3606 59 247 4849 152 114 893 1419
g 1071 1077 3084 177 65 218 255 87 74 231 4814 394 1553 1541
t 1460 2247 1134 155 5098 201 1392 5157 4971 304 200 229 1364 1183
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/24//oligo-analysis_2025-05-24.194232_ydknbE_pssm_count_matrices_logo_m4.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/24//oligo-analysis_2025-05-24.194232_ydknbE_pssm_count_matrices_logo_m4_rc.png
;
a 402 338 17 99 76 90 1187 134 1177 1148 73 500 369
c 156 290 31 25 1172 1123 22 47 30 43 16 222 266
g 321 341 20 11 20 33 13 1078 59 15 1120 188 231
t 405 315 1216 1149 16 38 62 25 18 78 75 374 418
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/24//oligo-analysis_2025-05-24.194232_ydknbE_pssm_count_matrices_logo_m5.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/24//oligo-analysis_2025-05-24.194232_ydknbE_pssm_count_matrices_logo_m5_rc.png
;
a 709 362 0 0 0 1929 0 1929 435 405
c 321 503 0 1929 0 0 0 0 631 585
g 442 281 0 0 1929 0 1929 0 318 422
t 457 783 1929 0 0 0 0 0 545 517
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/24//oligo-analysis_2025-05-24.194232_ydknbE_pssm_count_matrices_logo_m6.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/24//oligo-analysis_2025-05-24.194232_ydknbE_pssm_count_matrices_logo_m6_rc.png
;
a 644 458 625 1696 242 168 1880 120 192 1783 97 1433 1700 268 631 756
c 392 364 347 101 262 1761 48 67 1727 59 68 322 108 85 538 328
g 329 611 886 44 1336 88 15 1799 121 86 1793 212 102 1567 414 337
t 733 665 240 257 258 81 155 112 58 170 140 131 188 178 515 677
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/24//oligo-analysis_2025-05-24.194232_ydknbE_pssm_count_matrices_logo_m7.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/24//oligo-analysis_2025-05-24.194232_ydknbE_pssm_count_matrices_logo_m7_rc.png
;
a 136 251 26 32 478 76 70 432 42 92 106 21 25 470 71 83 416 27 93 218
c 187 42 209 412 10 25 384 21 29 383 28 13 464 11 50 397 46 25 232 119
g 46 53 84 15 16 347 18 51 407 24 8 47 23 5 289 33 12 55 64 92
t 153 176 203 63 18 74 50 18 44 23 380 441 10 36 112 9 48 415 133 93
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/24//oligo-analysis_2025-05-24.194232_ydknbE_pssm_count_matrices_logo_m8.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/24//oligo-analysis_2025-05-24.194232_ydknbE_pssm_count_matrices_logo_m8_rc.png
;
a 401 236 89 157 63 89 825 110 128 850 97 175 869 120 46 299 289
c 212 180 812 626 51 752 44 73 628 45 44 130 29 49 759 236 203
g 149 153 27 16 31 68 37 724 193 31 785 585 26 40 128 173 239
t 208 401 42 171 825 61 64 63 21 44 44 80 46 761 37 262 239
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/24//oligo-analysis_2025-05-24.194232_ydknbE_pssm_count_matrices_logo_m9.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/24//oligo-analysis_2025-05-24.194232_ydknbE_pssm_count_matrices_logo_m9_rc.png
;
a 661 571 0 2021 0 0 2021 0 688 635
c 378 314 2021 0 0 2021 0 0 335 469
g 278 365 0 0 0 0 0 2021 325 364
t 704 771 0 0 2021 0 0 0 673 553
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/24//oligo-analysis_2025-05-24.194232_ydknbE_pssm_count_matrices_logo_m10.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/24//oligo-analysis_2025-05-24.194232_ydknbE_pssm_count_matrices_logo_m10_rc.png
;
a 332 341 32 81 18 18 820 115 21 917 866 292 401
c 167 84 864 752 6 857 12 8 853 7 8 220 247
g 129 171 31 47 11 21 97 709 50 6 38 140 138
t 312 344 13 60 905 44 11 108 16 10 28 288 154
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/24//oligo-analysis_2025-05-24.194232_ydknbE_pssm_count_matrices_logo_m11.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/24//oligo-analysis_2025-05-24.194232_ydknbE_pssm_count_matrices_logo_m11_rc.png
;
a 621 675 0 0 0 0 0 2122 733 628
c 506 432 2122 2122 0 0 0 0 356 494
g 451 393 0 0 0 0 2122 0 401 393
t 544 622 0 0 2122 2122 0 0 632 607
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/24//oligo-analysis_2025-05-24.194232_ydknbE_pssm_count_matrices_logo_m12.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/24//oligo-analysis_2025-05-24.194232_ydknbE_pssm_count_matrices_logo_m12_rc.png
;
a 3109 3439 450 515 9588 1091 835 9748 9670 3374 3292
c 2628 1829 441 9070 214 438 560 275 203 2610 2668
g 2296 1865 303 525 226 8435 8892 319 383 2315 1825
t 2717 3617 9556 640 722 786 463 408 494 2451 2965
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/24//oligo-analysis_2025-05-24.194232_ydknbE_pssm_count_matrices_logo_m13.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/24//oligo-analysis_2025-05-24.194232_ydknbE_pssm_count_matrices_logo_m13_rc.png
;
a 398 372 0 0 0 1512 0 0 461 467
c 284 456 1512 0 0 0 0 1512 347 248
g 243 265 0 0 1512 0 0 0 323 264
t 587 419 0 1512 0 0 1512 0 381 533
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/24//oligo-analysis_2025-05-24.194232_ydknbE_pssm_count_matrices_logo_m14.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/24//oligo-analysis_2025-05-24.194232_ydknbE_pssm_count_matrices_logo_m14_rc.png
;
a 390 169 38 65 18 13 605 49 672 699 21 292 276
c 152 185 678 590 2 677 17 7 38 16 7 91 96
g 78 115 11 18 6 13 14 643 18 20 678 164 93
t 120 271 13 67 714 37 104 41 12 5 34 193 275
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/24//oligo-analysis_2025-05-24.194232_ydknbE_pssm_count_matrices_logo_m15.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/24//oligo-analysis_2025-05-24.194232_ydknbE_pssm_count_matrices_logo_m15_rc.png
;
a 1544 1686 276 348 393 4607 4470 472 4437 4497 1506 1841
c 950 933 285 3657 4228 80 40 270 133 70 1216 890
g 1070 810 88 471 129 55 133 4005 185 119 1116 825
t 1282 1417 4197 370 96 104 203 99 91 160 1008 1290
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/24//oligo-analysis_2025-05-24.194232_ydknbE_pssm_count_matrices_logo_m16.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/24//oligo-analysis_2025-05-24.194232_ydknbE_pssm_count_matrices_logo_m16_rc.png
;
a 356 256 130 194 21 28 978 74 920 1008 17 427 281
c 122 205 590 66 911 986 15 16 70 11 13 224 154
g 142 226 83 76 37 12 5 921 23 3 994 151 178
t 416 349 233 700 67 10 38 25 23 14 12 234 423
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/24//oligo-analysis_2025-05-24.194232_ydknbE_pssm_count_matrices_logo_m17.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/24//oligo-analysis_2025-05-24.194232_ydknbE_pssm_count_matrices_logo_m17_rc.png
;
a 203 242 0 0 810 0 0 810 269 197
c 140 179 810 0 0 0 0 0 180 158
g 280 91 0 810 0 810 810 0 171 199
t 187 298 0 0 0 0 0 0 190 256
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/24//oligo-analysis_2025-05-24.194232_ydknbE_pssm_count_matrices_logo_m18.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/24//oligo-analysis_2025-05-24.194232_ydknbE_pssm_count_matrices_logo_m18_rc.png
;
a 2675 3538 658 545 1037 11429 10843 871 9680 4710 2918
c 2992 2514 297 9362 525 97 212 852 368 2340 2705
g 2625 2266 205 694 10079 165 298 9826 1483 1965 2274
t 3639 3613 10771 1330 290 240 578 382 400 2916 4034
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/24//oligo-analysis_2025-05-24.194232_ydknbE_pssm_count_matrices_logo_m19.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/24//oligo-analysis_2025-05-24.194232_ydknbE_pssm_count_matrices_logo_m19_rc.png
;
a 591 904 2148 96 2332 227 168 2293 114 61 889 760
c 473 542 114 2144 53 65 138 43 91 2217 564 391
g 675 585 51 86 16 1963 2079 23 125 44 262 405
t 716 424 142 129 54 200 70 96 2125 133 740 899
//
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/24//oligo-analysis_2025-05-24.194232_ydknbE_pssm_count_matrices_logo_m20.png
; logo file:/var/www/html/rsat/public_html/tmp/www-data/2025/05/24//oligo-analysis_2025-05-24.194232_ydknbE_pssm_count_matrices_logo_m20_rc.png
;
; Host name rsat
; Job started 2025-05-24.194307
; Job done 2025-05-24.194317
; Seconds 1.19
; user 1.19
; system 0.33
; cuser 6.75
; csystem 1.05