peak-motifs MEnavajowhite2

motif discovery

oligos_6nt_test_vs_ctrl

oligos_6nt_test_vs_ctrl_m1	assembly: ggagta (sig=0.90; e-value=0.13)	RC: tactcc
oligos_6nt_test_vs_ctrl_m2	assembly: aacggc (sig=0.87; e-value=0.13)	RC: gccgtt
oligos_6nt_test_vs_ctrl_m3	assembly: taaagtt (sig=0.73; e-value=0.19)	RC: aacttta
oligos_6nt_test_vs_ctrl_m4	assembly: acagta (sig=0.57; e-value=0.27)	RC: tactgt
oligos_6nt_test_vs_ctrl_m5	assembly: cacttc (sig=0.56; e-value=0.28)	RC: gaagtg
oligos_6nt_test_vs_ctrl_m6	assembly: taaagtg (sig=0.64; e-value=0.23)	RC: cacttta
oligos_6nt_test_vs_ctrl_m7	: (sig=; e-value=1)	RC:
oligos_6nt_test_vs_ctrl_m8	: (sig=; e-value=1)	RC:
oligos_6nt_test_vs_ctrl_m9	: (sig=; e-value=1)	RC:
oligos_6nt_test_vs_ctrl_m10	: (sig=; e-value=1)	RC:

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

oligos_7nt_test_vs_ctrl

oligos_7nt_test_vs_ctrl_m1	assembly: tactcca (sig=0.61; e-value=0.25)	RC: tggagta
oligos_7nt_test_vs_ctrl_m2	assembly: aataaag (sig=0.27; e-value=0.54)	RC: ctttatt
oligos_7nt_test_vs_ctrl_m3	: (sig=; e-value=1)	RC:
oligos_7nt_test_vs_ctrl_m4	: (sig=; e-value=1)	RC:
oligos_7nt_test_vs_ctrl_m5	: (sig=; e-value=1)	RC:
oligos_7nt_test_vs_ctrl_m6	: (sig=; e-value=1)	RC:
oligos_7nt_test_vs_ctrl_m7	: (sig=; e-value=1)	RC:
oligos_7nt_test_vs_ctrl_m8	: (sig=; e-value=1)	RC:
oligos_7nt_test_vs_ctrl_m9	: (sig=; e-value=1)	RC:
oligos_7nt_test_vs_ctrl_m10	: (sig=; e-value=1)	RC:

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

oligos_8nt_test_vs_ctrl

oligos_8nt_test_vs_ctrl_m1	assembly: gtctttta (sig=0.33; e-value=0.47)	RC: taaaagac
oligos_8nt_test_vs_ctrl_m2	assembly: ggacccac (sig=0.19; e-value=0.65)	RC: gtgggtcc
oligos_8nt_test_vs_ctrl_m3	: (sig=; e-value=1)	RC:
oligos_8nt_test_vs_ctrl_m4	: (sig=; e-value=1)	RC:
oligos_8nt_test_vs_ctrl_m5	: (sig=; e-value=1)	RC:
oligos_8nt_test_vs_ctrl_m6	: (sig=; e-value=1)	RC:
oligos_8nt_test_vs_ctrl_m7	: (sig=; e-value=1)	RC:
oligos_8nt_test_vs_ctrl_m8	: (sig=; e-value=1)	RC:
oligos_8nt_test_vs_ctrl_m9	: (sig=; e-value=1)	RC:
oligos_8nt_test_vs_ctrl_m10	: (sig=; e-value=1)	RC:

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

dyads_test_vs_ctrl

dyads_test_vs_ctrl_m1	assembly: ctcnctc (sig=1.28; e-value=0.052)	RC: gagngag
dyads_test_vs_ctrl_m2	assembly: acannnnnnnnnnnnnnnnnntgt (sig=1.28; e-value=0.052)	RC: acannnnnnnnnnnnnnnnnntgt
dyads_test_vs_ctrl_m3	assembly: tgtnnnnnnnnnnnnnnnnntaa (sig=1.28; e-value=0.052)	RC: ttannnnnnnnnnnnnnnnnaca
dyads_test_vs_ctrl_m4	assembly: attnnnnnnnnnnnnnnnnnnaca (sig=1.28; e-value=0.052)	RC: tgtnnnnnnnnnnnnnnnnnnaat
dyads_test_vs_ctrl_m5	assembly: actnnnnnnnnnnnnnnnnntcc (sig=1.28; e-value=0.052)	RC: ggannnnnnnnnnnnnnnnnagt
dyads_test_vs_ctrl_m6	assembly: actnnnnnnnnnnnnnnnnnnnact (sig=1.28; e-value=0.052)	RC: agtnnnnnnnnnnnnnnnnnnnagt
dyads_test_vs_ctrl_m7	: (sig=; e-value=1)	RC:
dyads_test_vs_ctrl_m8	: (sig=; e-value=1)	RC:
dyads_test_vs_ctrl_m9	: (sig=; e-value=1)	RC:
dyads_test_vs_ctrl_m10	: (sig=; e-value=1)	RC:

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

Motif discovery

Motif 1 oligos_6nt_test_vs_ctrl_m1

k-mer sig=0.90; evalue=0.13

rcGGAGtagv

BCTACTCCGY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rcGGAGtagv

At3g60580.DAP:M0307:AthalianaCistrome At3g60580.DAP/M0307/AthalianaCistrome D 8 0.8000 0.733 0.587 NA NA

ZAT9:UN0417.1:JASPAR ZAT9/UN0417.1/JASPAR R 8 0.8000 0.733 0.587 NA NA

AT5G04390:M0375_1.02:CISBP AT5G04390/M0375_1.02/CISBP D 7 0.7000 0.740 0.518 NA NA

Total matches= 9 (6 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 142 (30.60%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr10g0099511)
Mean nb of predicted sites per peak: 1.20

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_test_vs_ctrl_m2

k-mer sig=0.87; evalue=0.13

smAaCGGCgm

KCGCCGTTKS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor smAaCGGCgm

PC-MYB1:MA2352.1:JASPAR PC-MYB1/MA2352.1/JASPAR R 9 0.9000 0.881 0.793 NA NA

MYB56:MA1174.2:JASPAR MYB56/MA1174.2/JASPAR D 10 1.0000 0.779 0.779 NA NA

MYB3R3:MA2343.1:JASPAR MYB3R3/MA2343.1/JASPAR R 8 0.8000 0.918 0.735 NA NA

Total matches= 86 (83 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 83 (17.89%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr09g0330761)
Mean nb of predicted sites per peak: 1.12

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_test_vs_ctrl_m3

k-mer sig=0.73; evalue=0.19

tmTAaaGTTrd

HYAACTTTAKA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor tmTAaaGTTrd

AT3G52440:MA1276.1:JASPAR AT3G52440/MA1276.1/JASPAR D 11 1.0000 0.780 0.780 NA NA

At4g38000.ampDAP:M0275:AthalianaCistrome At4g38000.ampDAP/M0275/AthalianaCistrome D 11 1.0000 0.774 0.774 NA NA

AT5G63260.DAP:M0340:AthalianaCistrome AT5G63260.DAP/M0340/AthalianaCistrome D 11 1.0000 0.758 0.758 NA NA

Total matches= 84 (81 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 171 (36.85%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr16g0379181)
Mean nb of predicted sites per peak: 1.31

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_test_vs_ctrl_m4

k-mer sig=0.57; evalue=0.27

ayACaGTAvh

DBTACTGTRT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ayACaGTAvh

ALOG:EEAD0170:EEADannot ALOG/EEAD0170/EEADannot R 10 0.9091 0.871 0.792 NA NA

AtMYB104_I:AtMYB104_I:AthaMYB AtMYB104_I/AtMYB104_I/AthaMYB R 8 0.8000 0.847 0.678 NA NA

MYB52:MA1171.1:JASPAR MYB52/MA1171.1/JASPAR R 10 0.9091 0.710 0.646 NA NA

Total matches= 29 (26 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 124 (26.72%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr07g0178441)
Mean nb of predicted sites per peak: 1.26

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_test_vs_ctrl_m5

k-mer sig=0.56; evalue=0.28

syCaCTTCvc

GBGAAGTGRS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor syCaCTTCvc

LEC1-A:UN0423.1:JASPAR LEC1-A/UN0423.1/JASPAR R 10 1.0000 0.737 0.737 NA NA

AT2G31460:UN0390.1:JASPAR AT2G31460/UN0390.1/JASPAR R 10 0.8333 0.715 0.595 NA NA

AT2G31460.DAP:M0726:AthalianaCistrome AT2G31460.DAP/M0726/AthalianaCistrome R 10 0.8333 0.715 0.595 NA NA

Total matches= 25 (22 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 210 (45.26%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr07g0182181)
Mean nb of predicted sites per peak: 1.38

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 oligos_6nt_test_vs_ctrl_m6

k-mer sig=0.64; evalue=0.23

drTAAAGTkkr

YMMACTTTAYH

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor drTAAAGTkkr

AT3G52440:MA1276.1:JASPAR AT3G52440/MA1276.1/JASPAR D 11 1.0000 0.827 0.827 NA NA

AT5G63260.DAP:M0340:AthalianaCistrome AT5G63260.DAP/M0340/AthalianaCistrome D 11 1.0000 0.797 0.797 NA NA

At4g38000.ampDAP:M0275:AthalianaCistrome At4g38000.ampDAP/M0275/AthalianaCistrome D 11 1.0000 0.795 0.795 NA NA

Total matches= 101 (98 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 120 (25.86%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr14g0374431)
Mean nb of predicted sites per peak: 1.30

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 oligos_7nt_test_vs_ctrl_m1

k-mer sig=0.61; evalue=0.25

amtaCtCCAyh

DRTGGAGTAKT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor amtaCtCCAyh

At3g60580.DAP:M0307:AthalianaCistrome At3g60580.DAP/M0307/AthalianaCistrome R 8 0.7273 0.725 0.527 NA NA

ZAT9:UN0417.1:JASPAR ZAT9/UN0417.1/JASPAR D 8 0.7273 0.725 0.527 NA NA

AT5G04390:M0375_1.02:CISBP AT5G04390/M0375_1.02/CISBP R 7 0.6364 0.746 0.475 NA NA

Total matches= 7 (4 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 73 (15.73%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr10g0099511)
Mean nb of predicted sites per peak: 1.14

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_7nt_test_vs_ctrl_m2

k-mer sig=0.27; evalue=0.54

ygaATAaaGyr

YRCTTTATTCR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ygaATAaaGyr

CDF5:UN0360.1:JASPAR CDF5/UN0360.1/JASPAR D 10 0.9091 0.711 0.647 NA NA

DOF2.2:MA1272.2:JASPAR DOF2.2/MA1272.2/JASPAR D 10 0.9091 0.708 0.643 NA NA

AT1G47655:MA1275.1:JASPAR AT1G47655/MA1275.1/JASPAR D 10 0.8333 0.769 0.641 NA NA

Total matches= 85 (82 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 159 (34.27%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr16g0379861)
Mean nb of predicted sites per peak: 1.31

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 oligos_8nt_test_vs_ctrl_m1

k-mer sig=0.33; evalue=0.47

ttGTCTTTTats

SATAAAAGACAA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ttGTCTTTTats

AT3G10030:MA1662.1:JASPAR AT3G10030/MA1662.1/JASPAR R 12 0.9231 0.714 0.659 NA NA

SGR5:MA1159.1:JASPAR SGR5/MA1159.1/JASPAR R 12 0.8000 0.747 0.598 NA NA

TATA-box-binding:6ueq_B:3D-footprint TATA-box-binding/6ueq_B/3D-footprint D 8 0.6667 0.896 0.597 NA NA

Total matches= 50 (47 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 43 (9.27%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr20g0120991)
Mean nb of predicted sites per peak: 1.05

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_8nt_test_vs_ctrl_m2

k-mer sig=0.19; evalue=0.65

tgGGaCCCaCsc

GSGTGGGTCCCA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor tgGGaCCCaCsc

At1g72010.ampDAP:M0748:AthalianaCistrome At1g72010.ampDAP/M0748/AthalianaCistrome R 12 0.9231 0.909 0.839 NA NA

At1g72010:MA1288.1:JASPAR At1g72010/MA1288.1/JASPAR R 12 0.9231 0.898 0.829 NA NA

At1g69690.ampDAP:M0756:AthalianaCistrome At1g69690.ampDAP/M0756/AthalianaCistrome R 12 0.9231 0.897 0.828 NA NA

Total matches= 76 (73 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 102 (21.98%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr16g0379181)
Mean nb of predicted sites per peak: 1.31

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 dyads_test_vs_ctrl_m1

k-mer sig=1.28; evalue=0.052

ytCtCkCtCby

RVGAGMGAGAR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ytCtCkCtCby

CURE3UTR1:EEAD0076:EEADannot CURE3UTR1/EEAD0076/EEADannot D 10 0.9091 0.890 0.809 NA NA

BPC1.ampDAP:M0149:AthalianaCistrome BPC1.ampDAP/M0149/AthalianaCistrome D 11 0.7333 0.862 0.632 NA NA

AT3G46070:MA1381.1:JASPAR AT3G46070/MA1381.1/JASPAR D 11 0.7333 0.800 0.587 NA NA

Total matches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 196 (42.24%)
Max nb of predicted sites per peak: 6
(gene-Lalb_Chr20g0123591)
Mean nb of predicted sites per peak: 1.56

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 dyads_test_vs_ctrl_m2

k-mer sig=1.28; evalue=0.052

ssaCashSGswSkssstysbgsktGtsg

CSACAMSCVSRASSSMSWSCSDSTGTSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssaCashSGswSkssstysbgsktGtsg

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 55 (11.85%)
Max nb of predicted sites per peak: 8
(gene-Lalb_Chr01g0013011)
Mean nb of predicted sites per peak: 1.38

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 dyads_test_vs_ctrl_m3

k-mer sig=1.28; evalue=0.052

sgtGtSwsSswScasvssgysgtaacs

SGTTACSRCSSBSTGSWSSSWSACACS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sgtGtSwsSswScasvssgysgtaacs

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 72 (15.52%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr23g0269511)
Mean nb of predicted sites per peak: 1.32

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 dyads_test_vs_ctrl_m4

k-mer sig=1.28; evalue=0.052

ssattswsSswssarsymgbsssaCass

SSTGTSSSVCKRSYTSSWSSSWSAATSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssattswsSswssarsymgbsssaCass

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 61 (13.15%)
Max nb of predicted sites per peak: 9
(gene-Lalb_Chr01g0013011)
Mean nb of predicted sites per peak: 1.46

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 dyads_test_vs_ctrl_m5

k-mer sig=1.28; evalue=0.052

ssrCtsmSksmGsvgsvskbsstCCss

SSGGASSVMSBSCBSCKSMSKSAGYSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssrCtsmSksmGsvgsvskbsstCCss

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 79 (17.03%)
Max nb of predicted sites per peak: 24
(gene-Lalb_Chr01g0013011)
Mean nb of predicted sites per peak: 2.41

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 16 dyads_test_vs_ctrl_m6

k-mer sig=1.28; evalue=0.052

ssrCtSmSksmGsvgsvsgbssssvckss

SSMGBSSSSVCSBSCBSCKSMSKSAGYSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssrCtSmSksmGsvgsvsgbssssvckss

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 79 (17.03%)
Max nb of predicted sites per peak: 26
(gene-Lalb_Chr01g0013011)
Mean nb of predicted sites per peak: 2.52

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]
Discovered motifs versus transcription factor databases
Motifs versus footprintDB-plants database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: MEnavajowhite2_Up1 (25/05/2025 11:56)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssaCashSGswSkssstysbgsktGtsg

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sgtGtSwsSswScasvssgysgtaacs

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssattswsSswssarsymgbsssaCass

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssrCtsmSksmGsvgsvskbsstCCss

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssrCtSmSksmGsvgsvsgbssssvckss

Total matches= 0

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

RSAT - peak-motifs result

Analysis: MEnavajowhite2_Up1 (25/05/2025 11:56)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor ssaCashSGswSkssstysbgsktGtsg Total matches= 0

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor sgtGtSwsSswScasvssgysgtaacs Total matches= 0

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor ssattswsSswssarsymgbsssaCass Total matches= 0

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor ssrCtsmSksmGsvgsvskbsstCCss Total matches= 0

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor ssrCtSmSksmGsvgsvsgbssssvckss Total matches= 0

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssaCashSGswSkssstysbgsktGtsg

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sgtGtSwsSswScasvssgysgtaacs

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssattswsSswssarsymgbsssaCass

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssrCtsmSksmGsvgsvskbsstCCss

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssrCtSmSksmGsvgsvsgbssssvckss

Total matches= 0