peak-motifs MEblack

Motif discovery

Motif 1 oligos_6nt_test_vs_ctrl_m1

k-mer sig=65.68; evalue=2.1e-66

kgttaGGGtttaaaaCCCtaacw

WGTTAGGGTTTTAAACCCTAACM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kgttaGGGtttaaaaCCCtaacw

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR R 15 0.6522 0.779 0.508 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 14 0.5833 0.806 0.470 NA NA

AT1G72740:MA1353.2:JASPAR AT1G72740/MA1353.2/JASPAR D 11 0.4783 0.971 0.465 NA NA

Total matches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 233 (6.26%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr25g0283261)
Mean nb of predicted sites per peak: 1.57

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_test_vs_ctrl_m2

k-mer sig=39.35; evalue=4.5e-40

ybaGGCCCAaacm

KGTTTGGGCCTVR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ybaGGCCCAaacm

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 13 0.8667 0.960 0.832 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 13 0.8667 0.912 0.791 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.6923 0.967 0.670 NA NA

Total matches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 737 (19.79%)
Max nb of predicted sites per peak: 6
(gene-Lalb_Chr01g0004301)
Mean nb of predicted sites per peak: 1.32

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_test_vs_ctrl_m3

k-mer sig=29.25; evalue=5.6e-30

csaaGCCCAaamc

GKTTTGGGCTTSG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor csaaGCCCAaamc

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 13 0.8667 0.865 0.750 NA NA

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 13 0.8667 0.838 0.726 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.6923 0.842 0.583 NA NA

Total matches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 672 (18.05%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr02g0152301)
Mean nb of predicted sites per peak: 1.25

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_test_vs_ctrl_m4

k-mer sig=20.03; evalue=9.3e-21

cctttCCCGCCatys

SRATGGCGGGAAAGG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cctttCCCGCCatys

E2FD:MA1732.1:JASPAR E2FD/MA1732.1/JASPAR R 14 0.8750 0.848 0.742 NA NA

DEL2.ampDAP:M0366:AthalianaCistrome DEL2.ampDAP/M0366/AthalianaCistrome R 14 0.8750 0.848 0.742 NA NA

DEL1.ampDAP:M0365:AthalianaCistrome DEL1.ampDAP/M0365/AthalianaCistrome R 14 0.8750 0.845 0.739 NA NA

Total matches= 20 (17 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 665 (17.86%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr11g0073401)
Mean nb of predicted sites per peak: 1.19

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_test_vs_ctrl_m5

k-mer sig=39.35; evalue=4.5e-40

gbgraaTGGGCCtrr

YYAGGCCCATTYCVC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gbgraaTGGGCCtrr

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR R 14 0.8750 0.941 0.823 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot D 14 0.8750 0.938 0.821 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR R 9 0.6000 0.949 0.570 NA NA

Total matches= 7 (4 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 738 (19.82%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr25g0289601)
Mean nb of predicted sites per peak: 1.33

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 oligos_6nt_test_vs_ctrl_m6

k-mer sig=15.25; evalue=5.6e-16

mhCCaaCGGCtacg

CGTAGCCGTTGGDK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mhCCaaCGGCtacg

MYB3R3:EEAD0045:EEADannot MYB3R3/EEAD0045/EEADannot R 14 1.0000 0.794 0.794 NA NA

ZIM.DAP:M0290:AthalianaCistrome ZIM.DAP/M0290/AthalianaCistrome R 14 0.9333 0.778 0.726 NA NA

MYB3R4:MA1180.2:JASPAR MYB3R4/MA1180.2/JASPAR R 11 0.7333 0.859 0.630 NA NA

Total matches= 24 (21 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 674 (18.10%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr12g0199901)
Mean nb of predicted sites per peak: 1.26

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 oligos_6nt_test_vs_ctrl_m7

k-mer sig=15.25; evalue=5.6e-16

cyCCaaCGGtcvm

KBGACCGTTGGRG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cyCCaaCGGtcvm

MYB3R1:MA1178.2:JASPAR MYB3R1/MA1178.2/JASPAR D 13 1.0000 0.881 0.881 NA NA

ZIM.DAP:M0290:AthalianaCistrome ZIM.DAP/M0290/AthalianaCistrome R 13 0.8667 0.832 0.721 NA NA

MYB70:MA1393.2:JASPAR MYB70/MA1393.2/JASPAR R 11 0.8462 0.805 0.681 NA NA

Total matches= 61 (58 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 556 (14.93%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr22g0355241)
Mean nb of predicted sites per peak: 1.21

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_6nt_test_vs_ctrl_m8

k-mer sig=9.07; evalue=8.5e-10

rraGaGtGaaarr

YYTTTCACTCTYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rraGaGtGaaarr

AT3G46070:MA1381.1:JASPAR AT3G46070/MA1381.1/JASPAR R 13 0.8667 0.923 0.800 NA NA

BPC1.ampDAP:M0149:AthalianaCistrome BPC1.ampDAP/M0149/AthalianaCistrome R 13 0.8667 0.740 0.641 NA NA

COG1.ampDAP:M0276:AthalianaCistrome COG1.ampDAP/M0276/AthalianaCistrome R 13 0.8667 0.701 0.607 NA NA

Total matches= 17 (14 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1395 (37.46%)
Max nb of predicted sites per peak: 8
(gene-Lalb_Chr12g0197671)
Mean nb of predicted sites per peak: 1.45

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 oligos_6nt_test_vs_ctrl_m9

k-mer sig=65.68; evalue=2.1e-66

sdGGtttaaamcgaAACCCtaayy

RRTTAGGGTTTCGKTTTAAACCHS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sdGGtttaaamcgaAACCCtaayy

TBP3.ampDAP:M0621:AthalianaCistrome TBP3.ampDAP/M0621/AthalianaCistrome R 18 0.7200 0.906 0.652 NA NA

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR D 17 0.6538 0.885 0.579 NA NA

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR D 15 0.6250 0.888 0.555 NA NA

Total matches= 17 (14 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 770 (20.68%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr18g0052161)
Mean nb of predicted sites per peak: 1.19

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_6nt_test_vs_ctrl_m10

k-mer sig=20.03; evalue=9.3e-21

cskyyCCCGCCGCCryys

SRRYGGCGGCGGGRRMSG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cskyyCCCGCCGCCryys

ERF4.ampDAP:M0033:AthalianaCistrome ERF4.ampDAP/M0033/AthalianaCistrome R 18 0.9000 0.875 0.788 NA NA

ERF8.ampDAP:M0046:AthalianaCistrome ERF8.ampDAP/M0046/AthalianaCistrome R 17 0.8947 0.872 0.780 NA NA

ERF11.ampDAP:M0072:AthalianaCistrome ERF11.ampDAP/M0072/AthalianaCistrome R 18 0.9000 0.866 0.779 NA NA

Total matches= 212 (209 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 758 (20.35%)
Max nb of predicted sites per peak: 16
(gene-Lalb_Chr22g0359191)
Mean nb of predicted sites per peak: 2.26

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_7nt_test_vs_ctrl_m1

k-mer sig=83.34; evalue=4.6e-84

msyaaAACCCtaayyy

RRRTTAGGGTTTTRSK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor msyaaAACCCtaayyy

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 15 0.9375 0.910 0.853 NA NA

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR D 15 0.9375 0.886 0.831 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 14 0.8235 0.946 0.779 NA NA

Total matches= 34 (31 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 962 (25.83%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr20g0122851)
Mean nb of predicted sites per peak: 1.20

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_7nt_test_vs_ctrl_m2

k-mer sig=23.80; evalue=1.6e-24

vcaaaGCCCaatms

SKATTGGGCTTTGB

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor vcaaaGCCCaatms

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 14 0.9333 0.837 0.781 NA NA

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 14 0.9333 0.827 0.772 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.6429 0.860 0.553 NA NA

Total matches= 7 (4 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 622 (16.70%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr04g0259831)
Mean nb of predicted sites per peak: 1.20

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 oligos_7nt_test_vs_ctrl_m3

k-mer sig=23.60; evalue=2.5e-24

sycaGGCCCAatcm

KGATTGGGCCTGRS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sycaGGCCCAatcm

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 14 0.9333 0.984 0.919 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 14 0.9333 0.888 0.829 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.6429 0.992 0.638 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 632 (16.97%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr05g0221251)
Mean nb of predicted sites per peak: 1.25

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 oligos_7nt_test_vs_ctrl_m4

k-mer sig=83.34; evalue=4.6e-84

rrrttaGGGTTtakgg

CCMTAAACCCTAAYYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrrttaGGGTTtakgg

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 15 0.9375 0.939 0.880 NA NA

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR R 15 0.9375 0.915 0.858 NA NA

TBP3.ampDAP:M0621:AthalianaCistrome TBP3.ampDAP/M0621/AthalianaCistrome D 16 0.8421 0.946 0.796 NA NA

Total matches= 36 (33 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1124 (30.18%)
Max nb of predicted sites per peak: 6
(gene-Lalb_Chr10g0096011)
Mean nb of predicted sites per peak: 1.28

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 oligos_7nt_test_vs_ctrl_m5

k-mer sig=19.34; evalue=4.6e-20

rgaatGGCGGGaaarg

CYTTTCCCGCCATTCY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rgaatGGCGGGaaarg

E2FD:MA1732.1:JASPAR E2FD/MA1732.1/JASPAR D 15 0.9375 0.814 0.764 NA NA

DEL2.ampDAP:M0366:AthalianaCistrome DEL2.ampDAP/M0366/AthalianaCistrome D 15 0.9375 0.814 0.764 NA NA

DEL1.ampDAP:M0365:AthalianaCistrome DEL1.ampDAP/M0365/AthalianaCistrome D 15 0.9375 0.809 0.759 NA NA

Total matches= 16 (13 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 785 (21.08%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr24g0400071)
Mean nb of predicted sites per peak: 1.21

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 16 oligos_7nt_test_vs_ctrl_m6

k-mer sig=83.34; evalue=4.6e-84

scyaaAACCCtagcyc

GRGCTAGGGTTTTRGS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor scyaaAACCCtagcyc

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 15 0.9375 0.881 0.826 NA NA

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR D 15 0.9375 0.840 0.788 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 14 0.8235 0.917 0.755 NA NA

Total matches= 26 (23 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 926 (24.87%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr20g0122851)
Mean nb of predicted sites per peak: 1.19

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 17 oligos_7nt_test_vs_ctrl_m7

k-mer sig=12.12; evalue=7.6e-13

smtCCaaCGGCtacr

YGTAGCCGTTGGAKS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor smtCCaaCGGCtacr

MYB3R3:EEAD0045:EEADannot MYB3R3/EEAD0045/EEADannot R 14 0.9333 0.805 0.752 NA NA

ZIM.DAP:M0290:AthalianaCistrome ZIM.DAP/M0290/AthalianaCistrome R 14 0.8750 0.794 0.695 NA NA

MYB3R4:MA1180.2:JASPAR MYB3R4/MA1180.2/JASPAR R 11 0.6875 0.873 0.600 NA NA

Total matches= 16 (13 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 573 (15.39%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr01g0005111)
Mean nb of predicted sites per peak: 1.21

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 18 oligos_7nt_test_vs_ctrl_m8

k-mer sig=83.34; evalue=4.6e-84

ccgaAACCCtAayyy

RRRTTAGGGTTTCGG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ccgaAACCCtAayyy

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 15 1.0000 0.935 0.935 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 14 0.8750 0.966 0.845 NA NA

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR D 14 0.8750 0.901 0.788 NA NA

Total matches= 37 (34 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 953 (25.59%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr24g0399901)
Mean nb of predicted sites per peak: 1.21

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 19 oligos_7nt_test_vs_ctrl_m9

k-mer sig=9.79; evalue=1.6e-10

kkGaCCGttGGaks

SMTCCAACGGTCMM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kkGaCCGttGGaks

MYB3R1:MA1178.2:JASPAR MYB3R1/MA1178.2/JASPAR R 13 0.9286 0.830 0.771 NA NA

ZIM.DAP:M0290:AthalianaCistrome ZIM.DAP/M0290/AthalianaCistrome D 13 0.8125 0.810 0.658 NA NA

MYB73:MA1394.2:JASPAR MYB73/MA1394.2/JASPAR R 11 0.7333 0.825 0.605 NA NA

Total matches= 35 (32 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 533 (14.31%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr22g0355241)
Mean nb of predicted sites per peak: 1.16

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 20 oligos_7nt_test_vs_ctrl_m10

k-mer sig=21.05; evalue=8.9e-22

rdaaTGGGCCtGrs

SYCAGGCCCATTHY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rdaaTGGGCCtGrs

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR R 14 0.9333 0.933 0.871 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot D 14 0.9333 0.899 0.839 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR R 9 0.6429 0.940 0.604 NA NA

Total matches= 3

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 716 (19.23%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr20g0112301)
Mean nb of predicted sites per peak: 1.24

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 21 oligos_8nt_test_vs_ctrl_m1

k-mer sig=97.45; evalue=3.5e-98

mccaaAACCCtaatyys

SRRATTAGGGTTTTGGK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mccaaAACCCtaatyys

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 15 0.8824 0.956 0.844 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 15 0.8824 0.928 0.819 NA NA

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR D 17 0.8947 0.883 0.790 NA NA

Total matches= 30 (27 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 943 (25.32%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr10g0096011)
Mean nb of predicted sites per peak: 1.20

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 22 oligos_8nt_test_vs_ctrl_m2

k-mer sig=97.45; evalue=3.5e-98

grrattaGGGTTtakgg

CCMTAAACCCTAATYYC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor grrattaGGGTTtakgg

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 15 0.8824 0.957 0.845 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 15 0.8824 0.934 0.824 NA NA

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR R 17 0.8947 0.917 0.821 NA NA

Total matches= 30 (27 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1088 (29.22%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr20g0122851)
Mean nb of predicted sites per peak: 1.26

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 23 oligos_8nt_test_vs_ctrl_m3

k-mer sig=97.45; evalue=3.5e-98

sccaaAACCCtaGcyc

GRGCTAGGGTTTTGGS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sccaaAACCCtaGcyc

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 15 0.9375 0.891 0.836 NA NA

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR D 15 0.9375 0.828 0.776 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 14 0.8235 0.922 0.759 NA NA

Total matches= 29 (26 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 957 (25.70%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr20g0122851)
Mean nb of predicted sites per peak: 1.20

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 24 oligos_8nt_test_vs_ctrl_m4

k-mer sig=16.92; evalue=1.2e-17

tvmtCCaaCGGCtaCgr

YCGTAGCCGTTGGAKBA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor tvmtCCaaCGGCtaCgr

MYB3R3:EEAD0045:EEADannot MYB3R3/EEAD0045/EEADannot R 14 0.8235 0.805 0.663 NA NA

ZIM.DAP:M0290:AthalianaCistrome ZIM.DAP/M0290/AthalianaCistrome R 15 0.8824 0.750 0.661 NA NA

MYB3R4:MA1180.2:JASPAR MYB3R4/MA1180.2/JASPAR R 12 0.7059 0.850 0.600 NA NA

Total matches= 12 (9 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 569 (15.28%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr07g0189221)
Mean nb of predicted sites per peak: 1.22

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 25 oligos_8nt_test_vs_ctrl_m5

k-mer sig=97.45; evalue=3.5e-98

grrrtTaGGGTTtckgk

MCMGAAACCCTAAYYYC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor grrrtTaGGGTTtckgk

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 15 0.8824 0.960 0.847 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 15 0.8824 0.930 0.821 NA NA

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR R 17 0.8947 0.901 0.806 NA NA

Total matches= 27 (24 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1105 (29.67%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr10g0096011)
Mean nb of predicted sites per peak: 1.27

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 26 oligos_8nt_test_vs_ctrl_m6

k-mer sig=15.89; evalue=1.3e-16

kdGaGGCCCAaamvr

YBKTTTGGGCCTCHM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kdGaGGCCCAaamvr

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 15 1.0000 0.885 0.885 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 15 1.0000 0.815 0.815 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.6000 0.919 0.551 NA NA

Total matches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 638 (17.13%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr01g0002301)
Mean nb of predicted sites per peak: 1.17

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 27 oligos_8nt_test_vs_ctrl_m7

k-mer sig=15.09; evalue=8.1e-16

rrktttGGCGGGaaaagr

YCTTTTCCCGCCAAAMYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrktttGGCGGGaaaagr

E2FD:MA1732.1:JASPAR E2FD/MA1732.1/JASPAR D 15 0.8333 0.969 0.807 NA NA

DEL2.ampDAP:M0366:AthalianaCistrome DEL2.ampDAP/M0366/AthalianaCistrome D 15 0.8333 0.969 0.807 NA NA

DEL1.ampDAP:M0365:AthalianaCistrome DEL1.ampDAP/M0365/AthalianaCistrome D 15 0.8333 0.967 0.806 NA NA

Total matches= 14 (11 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 732 (19.66%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr14g0362301)
Mean nb of predicted sites per peak: 1.18

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 28 oligos_8nt_test_vs_ctrl_m8

k-mer sig=13.18; evalue=6.6e-14

svaaaaGCCCaattsr

YSAATTGGGCTTTTBS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor svaaaaGCCCaattsr

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 15 0.9375 0.789 0.739 NA NA

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 15 0.9375 0.781 0.732 NA NA

AT1G72740:MA1353.2:JASPAR AT1G72740/MA1353.2/JASPAR R 11 0.6875 0.705 0.485 NA NA

Total matches= 21 (18 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 497 (13.35%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr25g0279921)
Mean nb of predicted sites per peak: 1.16

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 29 oligos_8nt_test_vs_ctrl_m9

k-mer sig=6.47; evalue=3.4e-07

gsatCCaaCGGtCamr

YKTGACCGTTGGATSC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gsatCCaaCGGtCamr

MYB3R1:MA1178.2:JASPAR MYB3R1/MA1178.2/JASPAR D 13 0.8125 0.856 0.695 NA NA

ZIM.DAP:M0290:AthalianaCistrome ZIM.DAP/M0290/AthalianaCistrome R 14 0.8235 0.825 0.679 NA NA

MYB73:MA1394.2:JASPAR MYB73/MA1394.2/JASPAR D 12 0.7500 0.887 0.665 NA NA

Total matches= 39 (36 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 461 (12.38%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr22g0355241)
Mean nb of predicted sites per peak: 1.16

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 30 oligos_8nt_test_vs_ctrl_m10

k-mer sig=97.45; evalue=3.5e-98

cccaaAACCCtaacyc

GRGTTAGGGTTTTGGG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cccaaAACCCtaacyc

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 15 0.9375 0.925 0.867 NA NA

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR D 15 0.9375 0.868 0.814 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 14 0.8235 0.954 0.785 NA NA

Total matches= 37 (34 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 961 (25.81%)
Max nb of predicted sites per peak: 6
(gene-Lalb_Chr10g0096011)
Mean nb of predicted sites per peak: 1.23

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 31 dyads_test_vs_ctrl_m1

k-mer sig=67.02; evalue=9.5e-68

vmmaaaAACCCtaamyc

GRKTTAGGGTTTTTKKB

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor vmmaaaAACCCtaamyc

TBP3.ampDAP:M0621:AthalianaCistrome TBP3.ampDAP/M0621/AthalianaCistrome R 17 0.8947 0.889 0.795 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 15 0.8824 0.897 0.792 NA NA

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR D 17 0.8947 0.857 0.767 NA NA

Total matches= 30 (27 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 914 (24.54%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr20g0122851)
Mean nb of predicted sites per peak: 1.20

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 32 dyads_test_vs_ctrl_m2

k-mer sig=41.97; evalue=1.1e-42

ykaGGCCCAaaavv

BBTTTTGGGCCTMR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ykaGGCCCAaaavv

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 14 0.9333 0.954 0.890 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 14 0.9333 0.902 0.842 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.6429 0.964 0.620 NA NA

Total matches= 10 (7 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 723 (19.41%)
Max nb of predicted sites per peak: 6
(gene-Lalb_Chr01g0004301)
Mean nb of predicted sites per peak: 1.27

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 33 dyads_test_vs_ctrl_m3

k-mer sig=36.83; evalue=1.5e-37

vvaaaaaGCCCaaaavv

BBTTTTGGGCTTTTTBB

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor vvaaaaaGCCCaaaavv

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 15 0.8824 0.779 0.687 NA NA

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 15 0.8824 0.746 0.658 NA NA

dof4.2:MA1273.1:JASPAR dof4.2/MA1273.1/JASPAR D 16 0.8000 0.701 0.561 NA NA

Total matches= 13 (10 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 564 (15.15%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr05g0222631)
Mean nb of predicted sites per peak: 1.18

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 34 dyads_test_vs_ctrl_m4

k-mer sig=22.89; evalue=1.3e-23

cytttCCCGCCatys

SRATGGCGGGAAARG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cytttCCCGCCatys

E2FD:MA1732.1:JASPAR E2FD/MA1732.1/JASPAR R 14 0.8750 0.859 0.752 NA NA

DEL2.ampDAP:M0366:AthalianaCistrome DEL2.ampDAP/M0366/AthalianaCistrome R 14 0.8750 0.859 0.752 NA NA

DEL1.ampDAP:M0365:AthalianaCistrome DEL1.ampDAP/M0365/AthalianaCistrome R 14 0.8750 0.855 0.748 NA NA

Total matches= 18 (15 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 640 (17.19%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr11g0073401)
Mean nb of predicted sites per peak: 1.18

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 35 dyads_test_vs_ctrl_m5

k-mer sig=17.20; evalue=6.3e-18

mhCCaaCGGCtacg

CGTAGCCGTTGGDK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mhCCaaCGGCtacg

MYB3R3:EEAD0045:EEADannot MYB3R3/EEAD0045/EEADannot R 14 1.0000 0.795 0.795 NA NA

ZIM.DAP:M0290:AthalianaCistrome ZIM.DAP/M0290/AthalianaCistrome R 14 0.9333 0.772 0.721 NA NA

MYB3R4:MA1180.2:JASPAR MYB3R4/MA1180.2/JASPAR R 11 0.7333 0.858 0.629 NA NA

Total matches= 24 (21 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 650 (17.45%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr12g0199901)
Mean nb of predicted sites per peak: 1.24

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 36 dyads_test_vs_ctrl_m6

k-mer sig=41.97; evalue=1.1e-42

kdaaTGGGCCtgr

YCAGGCCCATTHM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kdaaTGGGCCtgr

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR R 13 0.8667 0.949 0.823 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot D 13 0.8667 0.942 0.817 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR R 9 0.6923 0.955 0.661 NA NA

Total matches= 12 (9 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 766 (20.57%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr25g0289601)
Mean nb of predicted sites per peak: 1.33

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 37 dyads_test_vs_ctrl_m7

k-mer sig=67.02; evalue=9.5e-68

twGGGyttagg

CCTAARCCCWA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor twGGGyttagg

TRP5:MA1802.1:JASPAR TRP5/MA1802.1/JASPAR R 10 0.9091 0.924 0.840 NA NA

HAT3.1:M0847_1.02:CISBP HAT3.1/M0847_1.02/CISBP R 10 0.9091 0.736 0.669 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 11 0.7333 0.877 0.643 NA NA

Total matches= 32 (29 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1162 (31.20%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr20g0112921)
Mean nb of predicted sites per peak: 1.34

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 38 dyads_test_vs_ctrl_m8

k-mer sig=17.20; evalue=6.3e-18

mbCCaaCGGtbv

BVACCGTTGGVK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mbCCaaCGGtbv

MYB3R1:MA1178.2:JASPAR MYB3R1/MA1178.2/JASPAR D 12 0.9231 0.878 0.810 NA NA

PC-MYB1:MA2352.1:JASPAR PC-MYB1/MA2352.1/JASPAR R 9 0.7500 0.926 0.695 NA NA

ZIM.DAP:M0290:AthalianaCistrome ZIM.DAP/M0290/AthalianaCistrome R 12 0.8000 0.845 0.676 NA NA

Total matches= 73 (70 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 639 (17.16%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr19g0139481)
Mean nb of predicted sites per peak: 1.22

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 39 dyads_test_vs_ctrl_m9

k-mer sig=22.89; evalue=1.3e-23

cstytCCCGCCGCCryys

SRRYGGCGGCGGGARASG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cstytCCCGCCGCCryys

ERF4.ampDAP:M0033:AthalianaCistrome ERF4.ampDAP/M0033/AthalianaCistrome R 18 0.9000 0.861 0.775 NA NA

ERF11.ampDAP:M0072:AthalianaCistrome ERF11.ampDAP/M0072/AthalianaCistrome R 18 0.9000 0.852 0.767 NA NA

ERF8.ampDAP:M0046:AthalianaCistrome ERF8.ampDAP/M0046/AthalianaCistrome R 17 0.8947 0.857 0.766 NA NA

Total matches= 199 (196 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 752 (20.19%)
Max nb of predicted sites per peak: 15
(gene-Lalb_Chr22g0359191)
Mean nb of predicted sites per peak: 2.14

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 40 dyads_test_vs_ctrl_m10

k-mer sig=8.86; evalue=1.4e-09

rrGaGaGtGaGrg

CYCTCACTCTCYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrGaGaGtGaGrg

BPC1.ampDAP:M0149:AthalianaCistrome BPC1.ampDAP/M0149/AthalianaCistrome R 13 0.8667 0.817 0.708 NA NA

AT3G46070:MA1381.1:JASPAR AT3G46070/MA1381.1/JASPAR R 12 0.7500 0.883 0.662 NA NA

CURE3UTR1:EEAD0076:EEADannot CURE3UTR1/EEAD0076/EEADannot R 10 0.7692 0.860 0.661 NA NA

Total matches= 14 (11 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1365 (36.65%)
Max nb of predicted sites per peak: 11
(gene-Lalb_Chr16g0381161)
Mean nb of predicted sites per peak: 1.99

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]
Discovered motifs versus transcription factor databases
Motifs versus footprintDB-plants database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: MEblack_Up1 (25/05/2025 13:56)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results