peak-motifs MEblack

Motif discovery

Motif 1 oligos_6nt_test_vs_ctrl_m1

k-mer sig=29.97; evalue=1.1e-30

yyaGGCCCaaacc

GGTTTGGGCCTRR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yyaGGCCCaaacc

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 13 0.8667 0.959 0.831 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 13 0.8667 0.915 0.793 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.6923 0.966 0.669 NA NA

Total matches= 7 (4 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 650 (17.45%)
Max nb of predicted sites per peak: 6
(gene-Lalb_Chr01g0004301)
Mean nb of predicted sites per peak: 1.33

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_test_vs_ctrl_m2

k-mer sig=25.08; evalue=8.3e-26

csaaGCCCAaamm

KKTTTGGGCTTSG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor csaaGCCCAaamm

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 13 0.8667 0.863 0.748 NA NA

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 13 0.8667 0.836 0.724 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.6923 0.838 0.580 NA NA

Total matches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 592 (15.90%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr18g0055141)
Mean nb of predicted sites per peak: 1.27

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_test_vs_ctrl_m3

k-mer sig=29.97; evalue=1.1e-30

sktaTGGGCCtrr

YYAGGCCCATAMS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sktaTGGGCCtrr

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot D 13 0.8667 0.945 0.819 NA NA

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR R 13 0.8667 0.929 0.805 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR R 9 0.6923 0.934 0.647 NA NA

Total matches= 19 (16 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 664 (17.83%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr24g0397981)
Mean nb of predicted sites per peak: 1.37

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_test_vs_ctrl_m4

k-mer sig=5.35; evalue=4.5e-06

ssCaaCGGtcvv

BBGACCGTTGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssCaaCGGtcvv

MYB3R1:MA1178.2:JASPAR MYB3R1/MA1178.2/JASPAR D 12 0.9231 0.900 0.831 NA NA

MYB70:MA1393.2:JASPAR MYB70/MA1393.2/JASPAR R 11 0.9167 0.872 0.800 NA NA

MYB44:MA2027.1:JASPAR MYB44/MA2027.1/JASPAR D 11 0.8462 0.888 0.752 NA NA

Total matches= 93 (90 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 397 (10.66%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr10g0095001)
Mean nb of predicted sites per peak: 1.23

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_test_vs_ctrl_m5

k-mer sig=5.16; evalue=6.9e-06

ssttaaaCCCGamc

GKTCGGGTTTAASS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssttaaaCCCGamc

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR D 14 0.9333 0.756 0.705 NA NA

TRB1:MA2032.1:JASPAR TRB1/MA2032.1/JASPAR D 11 0.7857 0.829 0.652 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 13 0.8125 0.794 0.645 NA NA

Total matches= 29 (26 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 453 (12.16%)
Max nb of predicted sites per peak: 6
(gene-Lalb_Chr02g0153051)
Mean nb of predicted sites per peak: 1.26

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 oligos_6nt_test_vs_ctrl_m6

k-mer sig=2.29; evalue=0.0051

sstTaAaAAaCyh

DRGTTTTTTAASS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sstTaAaAAaCyh

EMB1789.DAP:M0345:AthalianaCistrome EMB1789.DAP/M0345/AthalianaCistrome R 13 0.8667 0.708 0.614 NA NA

DOF2.2:MA1272.2:JASPAR DOF2.2/MA1272.2/JASPAR D 10 0.7692 0.729 0.561 NA NA

CDF5:UN0360.1:JASPAR CDF5/UN0360.1/JASPAR D 10 0.7692 0.722 0.556 NA NA

Total matches= 33 (30 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 197 (5.29%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr20g0110281)
Mean nb of predicted sites per peak: 1.05

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 oligos_6nt_test_vs_ctrl_m7

k-mer sig=29.97; evalue=1.1e-30

ggktTGGGCCarr

YYTGGCCCAAMCC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ggktTGGGCCarr

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR R 13 0.8667 0.923 0.800 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot D 13 0.8667 0.906 0.785 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR R 9 0.6923 0.930 0.644 NA NA

Total matches= 17 (14 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 575 (15.44%)
Max nb of predicted sites per peak: 6
(gene-Lalb_Chr18g0055141)
Mean nb of predicted sites per peak: 1.29

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_6nt_test_vs_ctrl_m8

k-mer sig=5.16; evalue=6.9e-06

msttaaaCCCaaamc

GKTTTGGGTTTAASK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor msttaaaCCCaaamc

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR D 15 1.0000 0.755 0.755 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 14 0.8750 0.772 0.675 NA NA

TBP3.ampDAP:M0621:AthalianaCistrome TBP3.ampDAP/M0621/AthalianaCistrome R 15 0.7895 0.795 0.627 NA NA

Total matches= 19 (16 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 446 (11.98%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr08g0241481)
Mean nb of predicted sites per peak: 1.14

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 oligos_6nt_test_vs_ctrl_m9

k-mer sig=1.93; evalue=0.012

cbaATttTAass

SSTTAAAATTVG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cbaATttTAass

PK22848.1:M0587_1.02:CISBP PK22848.1/M0587_1.02/CISBP D 12 0.9231 0.895 0.827 NA NA

TCX2:MA1162.1:JASPAR TCX2/MA1162.1/JASPAR R 12 0.8000 0.837 0.669 NA NA

TSO1:MA1161.1:JASPAR TSO1/MA1161.1/JASPAR R 12 0.8000 0.827 0.661 NA NA

Total matches= 37 (34 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 424 (11.39%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr19g0132451)
Mean nb of predicted sites per peak: 1.08

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_6nt_test_vs_ctrl_m10

k-mer sig=1.57; evalue=0.027

ssTAATAAsg

CSTTATTASS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssTAATAAsg

Os02g0706600:M1116_1.02:CISBP Os02g0706600/M1116_1.02/CISBP D 10 1.0000 0.752 0.752 NA NA

ATHB25.ampDAP:M0853:AthalianaCistrome ATHB25.ampDAP/M0853/AthalianaCistrome R 10 0.9091 0.787 0.715 NA NA

CmMAF2:EEAD0072:EEADannot CmMAF2/EEAD0072/EEADannot D 10 1.0000 0.713 0.713 NA NA

Total matches= 89 (86 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 96 (2.58%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr14g0369111)
Mean nb of predicted sites per peak: 1.06

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_7nt_test_vs_ctrl_m1

k-mer sig=18.50; evalue=3.2e-19

scaaaGCCCaaams

SKTTTGGGCTTTGS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor scaaaGCCCaaams

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 14 0.9333 0.828 0.772 NA NA

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 14 0.9333 0.793 0.740 NA NA

TRB2:MA1355.2:JASPAR TRB2/MA1355.2/JASPAR D 11 0.7857 0.709 0.557 NA NA

Total matches= 7 (4 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 580 (15.57%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr18g0055141)
Mean nb of predicted sites per peak: 1.22

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_7nt_test_vs_ctrl_m2

k-mer sig=17.81; evalue=1.5e-18

sycaGGCCCaaamc

GKTTTGGGCCTGRS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sycaGGCCCaaamc

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 14 0.9333 0.961 0.897 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 14 0.9333 0.892 0.832 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.6429 0.965 0.620 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 628 (16.86%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr01g0004301)
Mean nb of predicted sites per peak: 1.28

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 oligos_7nt_test_vs_ctrl_m3

k-mer sig=14.22; evalue=6e-15

kdaatGGGCCtgrs

SYCAGGCCCATTHM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kdaatGGGCCtgrs

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR R 14 0.9333 0.938 0.875 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot D 14 0.9333 0.906 0.846 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR R 9 0.6429 0.942 0.606 NA NA

Total matches= 3

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 593 (15.92%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr21g0308281)
Mean nb of predicted sites per peak: 1.25

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 oligos_7nt_test_vs_ctrl_m4

k-mer sig=18.50; evalue=3.2e-19

scaaaGCCCattwr

YWAATGGGCTTTGS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor scaaaGCCCattwr

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 14 0.9333 0.843 0.787 NA NA

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 14 0.9333 0.768 0.717 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.6429 0.794 0.510 NA NA

Total matches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 446 (11.98%)
Max nb of predicted sites per peak: 6
(gene-Lalb_Chr04g0258261)
Mean nb of predicted sites per peak: 1.19

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 oligos_7nt_test_vs_ctrl_m5

k-mer sig=17.81; evalue=1.5e-18

yytGGCCCaaams

SKTTTGGGCCARR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yytGGCCCaaams

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 13 0.8667 0.887 0.769 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 13 0.8667 0.876 0.759 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.6923 0.893 0.618 NA NA

Total matches= 14 (11 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 516 (13.86%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr02g0145081)
Mean nb of predicted sites per peak: 1.28

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 16 oligos_7nt_test_vs_ctrl_m6

k-mer sig=3.99; evalue=0.0001

vyCCaaCGGCtmm

KKAGCCGTTGGRB

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor vyCCaaCGGCtmm

MYB3R3:EEAD0045:EEADannot MYB3R3/EEAD0045/EEADannot R 13 0.9286 0.767 0.712 NA NA

ZIM.DAP:M0290:AthalianaCistrome ZIM.DAP/M0290/AthalianaCistrome R 13 0.8667 0.816 0.707 NA NA

MYB70:MA1393.2:JASPAR MYB70/MA1393.2/JASPAR R 11 0.8462 0.723 0.612 NA NA

Total matches= 20 (17 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 320 (8.59%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr18g0044811)
Mean nb of predicted sites per peak: 1.15

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 17 oligos_7nt_test_vs_ctrl_m7

k-mer sig=3.95; evalue=0.00011

ccaAACCCtAmm

KKTAGGGTTTGG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ccaAACCCtAmm

TRB1:MA2032.1:JASPAR TRB1/MA2032.1/JASPAR D 11 0.9167 0.969 0.889 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 12 0.8000 0.953 0.762 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 12 0.8000 0.943 0.755 NA NA

Total matches= 38 (35 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 341 (9.16%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr22g0351921)
Mean nb of predicted sites per peak: 1.12

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 18 oligos_7nt_test_vs_ctrl_m8

k-mer sig=17.81; evalue=1.5e-18

kkattGGGCCtgrs

SYCAGGCCCAATMM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kkattGGGCCtgrs

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR R 14 0.9333 0.985 0.919 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot D 14 0.9333 0.900 0.840 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR R 9 0.6429 0.990 0.636 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 686 (18.42%)
Max nb of predicted sites per peak: 6
(gene-Lalb_Chr01g0004301)
Mean nb of predicted sites per peak: 1.32

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 19 oligos_7nt_test_vs_ctrl_m9

k-mer sig=3.26; evalue=0.00055

kkGaCCGttGGrb

VYCCAACGGTCMM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kkGaCCGttGGrb

MYB3R1:MA1178.2:JASPAR MYB3R1/MA1178.2/JASPAR R 13 1.0000 0.874 0.874 NA NA

ZIM.DAP:M0290:AthalianaCistrome ZIM.DAP/M0290/AthalianaCistrome D 13 0.8667 0.812 0.704 NA NA

MYB73:MA1394.2:JASPAR MYB73/MA1394.2/JASPAR R 11 0.7857 0.841 0.661 NA NA

Total matches= 52 (49 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 344 (9.24%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr10g0095001)
Mean nb of predicted sites per peak: 1.18

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 20 oligos_7nt_test_vs_ctrl_m10

k-mer sig=15.06; evalue=8.7e-16

yygaGCCCAaamc

GKTTTGGGCTCRR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yygaGCCCAaamc

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 13 0.8667 0.852 0.738 NA NA

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 13 0.8667 0.764 0.662 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.6923 0.765 0.529 NA NA

Total matches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 574 (15.41%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr18g0055141)
Mean nb of predicted sites per peak: 1.21

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 21 oligos_8nt_test_vs_ctrl_m1

k-mer sig=10.68; evalue=2.1e-11

ssaaaaGCCCaatmm

KKATTGGGCTTTTSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssaaaaGCCCaatmm

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 14 0.8750 0.815 0.713 NA NA

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 14 0.8750 0.804 0.703 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.6000 0.851 0.510 NA NA

Total matches= 22 (19 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 483 (12.97%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr17g0337051)
Mean nb of predicted sites per peak: 1.20

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 22 oligos_8nt_test_vs_ctrl_m2

k-mer sig=10.03; evalue=9.3e-11

kkGaGGCCCAaams

SKTTTGGGCCTCMM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kkGaGGCCCAaams

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 14 0.9333 0.879 0.820 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 14 0.9333 0.808 0.754 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.6429 0.913 0.587 NA NA

Total matches= 3

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 535 (14.37%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr21g0304771)
Mean nb of predicted sites per peak: 1.17

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 23 oligos_8nt_test_vs_ctrl_m3

k-mer sig=7.55; evalue=2.8e-08

ccaaACCCtAamy

RKTTAGGGTTTGG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ccaaACCCtAamy

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 13 0.8667 0.971 0.841 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 13 0.8667 0.957 0.829 NA NA

AT1G72740:MA1353.2:JASPAR AT1G72740/MA1353.2/JASPAR R 11 0.8462 0.980 0.829 NA NA

Total matches= 38 (35 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 497 (13.35%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr25g0280551)
Mean nb of predicted sites per peak: 1.15

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 24 oligos_8nt_test_vs_ctrl_m4

k-mer sig=5.34; evalue=4.6e-06

ysCaaCGGCtasr

YSTAGCCGTTGSR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ysCaaCGGCtasr

MYB3R3:EEAD0045:EEADannot MYB3R3/EEAD0045/EEADannot R 13 0.9286 0.830 0.770 NA NA

MYB44:MA2027.1:JASPAR MYB44/MA2027.1/JASPAR D 12 0.9231 0.756 0.698 NA NA

MYB3R4:MA1180.2:JASPAR MYB3R4/MA1180.2/JASPAR R 11 0.7857 0.887 0.697 NA NA

Total matches= 31 (28 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 354 (9.51%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr22g0355241)
Mean nb of predicted sites per peak: 1.16

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 25 oligos_8nt_test_vs_ctrl_m5

k-mer sig=3.23; evalue=0.00059

sbttGGCCCattags

SCTAATGGGCCAAVS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sbttGGCCCattags

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 15 1.0000 0.806 0.806 NA NA

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 15 1.0000 0.774 0.774 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.6000 0.806 0.484 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 444 (11.92%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr06g0168751)
Mean nb of predicted sites per peak: 1.14

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 26 oligos_8nt_test_vs_ctrl_m6

k-mer sig=8.77; evalue=1.7e-09

bsaaaaGCCCattarr

YYTAATGGGCTTTTSV

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor bsaaaaGCCCattarr

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 15 0.9375 0.812 0.761 NA NA

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 15 0.9375 0.741 0.695 NA NA

PHYPADRAFT_38837:MA1022.1:JASPAR PHYPADRAFT_38837/MA1022.1/JASPAR D 10 0.6250 0.727 0.454 NA NA

Total matches= 22 (19 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 372 (9.99%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr04g0258261)
Mean nb of predicted sites per peak: 1.16

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 27 oligos_8nt_test_vs_ctrl_m7

k-mer sig=2.50; evalue=0.0032

vyCCaaCGGtCmm

KKGACCGTTGGRB

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor vyCCaaCGGtCmm

MYB3R1:MA1178.2:JASPAR MYB3R1/MA1178.2/JASPAR D 13 1.0000 0.881 0.881 NA NA

ZIM.DAP:M0290:AthalianaCistrome ZIM.DAP/M0290/AthalianaCistrome R 13 0.8667 0.810 0.702 NA NA

MYB73:MA1394.2:JASPAR MYB73/MA1394.2/JASPAR D 11 0.7857 0.854 0.671 NA NA

Total matches= 54 (51 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 341 (9.16%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr10g0095001)
Mean nb of predicted sites per peak: 1.19

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 28 oligos_8nt_test_vs_ctrl_m8

k-mer sig=2.42; evalue=0.0038

ybkttCCCGCCamm

KKTGGCGGGAAMVR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ybkttCCCGCCamm

E2FD:UN0361.1:JASPAR E2FD/UN0361.1/JASPAR R 14 0.8750 0.929 0.813 NA NA

E2FD:MA1732.1:JASPAR E2FD/MA1732.1/JASPAR R 13 0.8125 0.926 0.752 NA NA

DEL2.ampDAP:M0366:AthalianaCistrome DEL2.ampDAP/M0366/AthalianaCistrome R 13 0.8125 0.926 0.752 NA NA

Total matches= 19 (16 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 359 (9.64%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr02g0154041)
Mean nb of predicted sites per peak: 1.11

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 29 oligos_8nt_test_vs_ctrl_m9

k-mer sig=10.03; evalue=9.3e-11

ksatTGGGCCtCrc

GYGAGGCCCAATSM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ksatTGGGCCtCrc

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR R 14 0.9333 0.956 0.893 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot D 14 0.9333 0.864 0.806 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR R 9 0.6429 0.988 0.635 NA NA

Total matches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 550 (14.77%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr21g0304871)
Mean nb of predicted sites per peak: 1.20

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 30 oligos_8nt_test_vs_ctrl_m10

k-mer sig=1.46; evalue=0.035

ssaaaACCCGam

KTCGGGTTTTSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssaaaACCCGam

AT1G76870:MA1367.1:JASPAR AT1G76870/MA1367.1/JASPAR D 12 0.8571 0.821 0.703 NA NA

TRP5:MA1802.1:JASPAR TRP5/MA1802.1/JASPAR D 10 0.8333 0.811 0.676 NA NA

TRB1:MA2032.2:JASPAR TRB1/MA2032.2/JASPAR D 9 0.7500 0.780 0.585 NA NA

Total matches= 16 (13 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 441 (11.84%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr23g0272611)
Mean nb of predicted sites per peak: 1.18

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 31 dyads_test_vs_ctrl_m1

k-mer sig=31.80; evalue=1.6e-32

yyaGGCCCaaacc

GGTTTGGGCCTRR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yyaGGCCCaaacc

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 13 0.8667 0.963 0.834 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 13 0.8667 0.917 0.795 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.6923 0.970 0.671 NA NA

Total matches= 7 (4 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 648 (17.40%)
Max nb of predicted sites per peak: 6
(gene-Lalb_Chr01g0004301)
Mean nb of predicted sites per peak: 1.34

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 32 dyads_test_vs_ctrl_m2

k-mer sig=26.25; evalue=5.6e-27

scmaaGCCCAaamm

KKTTTGGGCTTKGS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor scmaaGCCCAaamm

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 14 0.9333 0.864 0.806 NA NA

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 14 0.9333 0.833 0.778 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.6429 0.840 0.540 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 589 (15.82%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr19g0135891)
Mean nb of predicted sites per peak: 1.26

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 33 dyads_test_vs_ctrl_m3

k-mer sig=31.80; evalue=1.6e-32

gkaatGGGCCtrr

YYAGGCCCATTMC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gkaatGGGCCtrr

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot D 13 0.8667 0.949 0.822 NA NA

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR R 13 0.8667 0.947 0.821 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR R 9 0.6923 0.953 0.660 NA NA

Total matches= 18 (15 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 658 (17.67%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr05g0219501)
Mean nb of predicted sites per peak: 1.36

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 34 dyads_test_vs_ctrl_m4

k-mer sig=6.23; evalue=5.9e-07

sbCAACGGtbm

KVACCGTTGVS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sbCAACGGtbm

PC-MYB1:MA2352.1:JASPAR PC-MYB1/MA2352.1/JASPAR R 9 0.8182 0.895 0.732 NA NA

MYB44.ampDAP:M0554:AthalianaCistrome MYB44.ampDAP/M0554/AthalianaCistrome D 11 1.0000 0.726 0.726 NA NA

MYB3R1:MA1178.2:JASPAR MYB3R1/MA1178.2/JASPAR D 11 0.8462 0.853 0.722 NA NA

Total matches= 84 (81 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 220 (5.91%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr22g0355241)
Mean nb of predicted sites per peak: 1.16

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 35 dyads_test_vs_ctrl_m5

k-mer sig=31.80; evalue=1.6e-32

rmttaaaTgSSScmwwaaaaaass

SSTTTTTTWWKGSSSCATTTAAKY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rmttaaaTgSSScmwwaaaaaass

REM19.DAP:M0725:AthalianaCistrome REM19.DAP/M0725/AthalianaCistrome D 14 0.5600 0.749 0.420 NA NA

Total matches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 238 (6.39%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr04g0258261)
Mean nb of predicted sites per peak: 1.11

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 36 dyads_test_vs_ctrl_m6

k-mer sig=31.80; evalue=1.6e-32

bvaaAKsSSsmcwwwaattss

SSAATTWWWGKSSSSMTTTBV

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor bvaaAKsSSsmcwwwaattss

PK22848.1:M0587_1.02:CISBP PK22848.1/M0587_1.02/CISBP R 12 0.5455 0.807 0.440 NA NA

AT1G20910.DAP:M0143:AthalianaCistrome AT1G20910.DAP/M0143/AthalianaCistrome D 11 0.5238 0.769 0.403 NA NA

Total matches= 2

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 201 (5.40%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr07g0178261)
Mean nb of predicted sites per peak: 1.07

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 37 dyads_test_vs_ctrl_m7

k-mer sig=31.80; evalue=1.6e-32

yyatAkSSSscmwwwwaaaass

SSTTTTWWWWKGSSSSMTATRR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yyatAkSSSscmwwwwaaaass

REM19.DAP:M0725:AthalianaCistrome REM19.DAP/M0725/AthalianaCistrome D 13 0.5417 0.750 0.406 NA NA

Total matches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 194 (5.21%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr04g0260641)
Mean nb of predicted sites per peak: 1.07

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 38 dyads_test_vs_ctrl_m8

k-mer sig=31.80; evalue=1.6e-32

wmaaaKsSSsmcttaaawwwwwttass

SSTAAWWWWWTTTAAGKSSSSMTTTKW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wmaaaKsSSsmcttaaawwwwwttass

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 156 (4.19%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr02g0147001)
Mean nb of predicted sites per peak: 1.12

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 39 dyads_test_vs_ctrl_m9

k-mer sig=31.80; evalue=1.6e-32

mtaTTRSsScmwwwttwwwwwwttabk

MVTAAWWWWWWAAWWWKGSSSYAATAK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mtaTTRSsScmwwwttwwwwwwttabk

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 209 (5.61%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr17g0346881)
Mean nb of predicted sites per peak: 1.05

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 40 dyads_test_vs_ctrl_m10

k-mer sig=31.80; evalue=1.6e-32

yytaTgSSScmwwwtawwwwaaasg

CSTTTWWWWTAWWWKGSSSCATARR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yytaTgSSScmwwwtawwwwaaasg

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 209 (5.61%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr24g0397981)
Mean nb of predicted sites per peak: 1.05

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]
Discovered motifs versus transcription factor databases
Motifs versus footprintDB-plants database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: MEblack_Up2 (25/05/2025 13:48)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rmttaaaTgSSScmwwaaaaaass

REM19.DAP:M0725:AthalianaCistrome REM19.DAP/M0725/AthalianaCistrome D 14 0.5600 0.749 0.420 NA NA

Total matches= 1

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yyatAkSSSscmwwwwaaaass

REM19.DAP:M0725:AthalianaCistrome REM19.DAP/M0725/AthalianaCistrome D 13 0.5417 0.750 0.406 NA NA

Total matches= 1

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wmaaaKsSSsmcttaaawwwwwttass

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mtaTTRSsScmwwwttwwwwwwttabk

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yytaTgSSScmwwwtawwwwaaasg

Total matches= 0

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

RSAT - peak-motifs result

Analysis: MEblack_Up2 (25/05/2025 13:48)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor rmttaaaTgSSScmwwaaaaaass REM19.DAP:M0725:AthalianaCistrome REM19.DAP/M0725/AthalianaCistrome D 14 0.5600 0.749 0.420 NA NA Total matches= 1

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor yyatAkSSSscmwwwwaaaass REM19.DAP:M0725:AthalianaCistrome REM19.DAP/M0725/AthalianaCistrome D 13 0.5417 0.750 0.406 NA NA Total matches= 1

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor wmaaaKsSSsmcttaaawwwwwttass Total matches= 0

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor mtaTTRSsScmwwwttwwwwwwttabk Total matches= 0

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor yytaTgSSScmwwwtawwwwaaasg Total matches= 0

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rmttaaaTgSSScmwwaaaaaass

REM19.DAP:M0725:AthalianaCistrome REM19.DAP/M0725/AthalianaCistrome D 14 0.5600 0.749 0.420 NA NA

Total matches= 1

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yyatAkSSSscmwwwwaaaass

REM19.DAP:M0725:AthalianaCistrome REM19.DAP/M0725/AthalianaCistrome D 13 0.5417 0.750 0.406 NA NA

Total matches= 1

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wmaaaKsSSsmcttaaawwwwwttass

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mtaTTRSsScmwwwttwwwwwwttabk

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yytaTgSSScmwwwtawwwwaaasg

Total matches= 0