peak-motifs MEblack

Motif discovery

Motif 1 oligos_6nt_test_vs_ctrl_m1

k-mer sig=41.43; evalue=3.7e-42

yyaGGCCCaaacs

SGTTTGGGCCTRR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yyaGGCCCaaacs

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 13 0.8667 0.959 0.831 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 13 0.8667 0.920 0.797 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.6923 0.966 0.669 NA NA

Total matches= 8 (5 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 414 (11.12%)
Max nb of predicted sites per peak: 6
(gene-Lalb_Chr01g0004301)
Mean nb of predicted sites per peak: 1.32

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_test_vs_ctrl_m2

k-mer sig=41.43; evalue=3.7e-42

scsaaGCCCAaams

SKTTTGGGCTTSGS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor scsaaGCCCAaams

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 14 0.9333 0.881 0.823 NA NA

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 14 0.9333 0.854 0.797 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.6429 0.858 0.552 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 376 (10.10%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr18g0055141)
Mean nb of predicted sites per peak: 1.26

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_test_vs_ctrl_m3

k-mer sig=38.88; evalue=1.3e-39

skawTGGGCCtgr

YCAGGCCCAWTMS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor skawTGGGCCtgr

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR R 13 0.8667 0.968 0.839 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot D 13 0.8667 0.961 0.833 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR R 9 0.6923 0.973 0.674 NA NA

Total matches= 22 (19 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 490 (13.16%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr24g0393341)
Mean nb of predicted sites per peak: 1.42

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_test_vs_ctrl_m4

k-mer sig=41.43; evalue=3.7e-42

bbaGGCCCaaCGGtcvy

RBGACCGTTGGGCCTVV

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor bbaGGCCCaaCGGtcvy

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 14 0.7778 0.910 0.708 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 14 0.7778 0.850 0.661 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.5294 0.957 0.507 NA NA

Total matches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 273 (7.33%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr16g0378721)
Mean nb of predicted sites per peak: 1.17

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_test_vs_ctrl_m5

k-mer sig=9.57; evalue=2.7e-10

sggtaaaaCCCaaamc

GKTTTGGGTTTTACCS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sggtaaaaCCCaaamc

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR D 15 0.9375 0.735 0.689 NA NA

TBP3.ampDAP:M0621:AthalianaCistrome TBP3.ampDAP/M0621/AthalianaCistrome R 16 0.8421 0.775 0.653 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 14 0.8235 0.774 0.637 NA NA

Total matches= 13 (10 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 226 (6.07%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr18g0056421)
Mean nb of predicted sites per peak: 1.13

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 oligos_6nt_test_vs_ctrl_m6

k-mer sig=41.43; evalue=3.7e-42

sbaGGCCCaacGGcyrsb

VSYRGCCGTTGGGCCTVS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sbaGGCCCaacGGcyrsb

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 14 0.7368 0.919 0.677 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 14 0.7368 0.871 0.642 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.5000 0.963 0.481 NA NA

Total matches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 306 (8.22%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr20g0112861)
Mean nb of predicted sites per peak: 1.20

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 oligos_6nt_test_vs_ctrl_m7

k-mer sig=9.57; evalue=2.7e-10

rrgtaaaaCCCtaamys

SRKTTAGGGTTTTACYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrgtaaaaCCCtaamys

TBP3.ampDAP:M0621:AthalianaCistrome TBP3.ampDAP/M0621/AthalianaCistrome R 17 0.8947 0.865 0.774 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 15 0.8824 0.871 0.768 NA NA

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR D 17 0.8947 0.837 0.749 NA NA

Total matches= 24 (21 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 192 (5.16%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr10g0102881)
Mean nb of predicted sites per peak: 1.07

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_6nt_test_vs_ctrl_m8

k-mer sig=41.43; evalue=3.7e-42

skatTGGGCCtgg

CCAGGCCCAATMS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor skatTGGGCCtgg

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR R 13 0.8667 0.984 0.852 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot D 13 0.8667 0.931 0.807 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR R 9 0.6923 0.991 0.686 NA NA

Total matches= 8 (5 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 467 (12.54%)
Max nb of predicted sites per peak: 6
(gene-Lalb_Chr01g0004301)
Mean nb of predicted sites per peak: 1.36

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 oligos_6nt_test_vs_ctrl_m9

k-mer sig=4.69; evalue=2e-05

skSGCGGGaams

SKTTCCCGCSMS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor skSGCGGGaams

E2Fc:E2Fc:Athamap E2Fc/E2Fc/Athamap R 10 0.7692 0.908 0.698 NA NA

E2Fa:E2Fa:Athamap E2Fa/E2Fa/Athamap R 8 0.6667 0.984 0.656 NA NA

E2Fb:E2Fb:Athamap E2Fb/E2Fb/Athamap R 8 0.6667 0.981 0.654 NA NA

Total matches= 25 (22 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 221 (5.93%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr21g0311371)
Mean nb of predicted sites per peak: 1.29

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_6nt_test_vs_ctrl_m10

k-mer sig=41.43; evalue=3.7e-42

cyraGCCCAaams

SKTTTGGGCTYRG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cyraGCCCAaams

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 13 0.8667 0.873 0.757 NA NA

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 13 0.8667 0.796 0.690 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.6923 0.798 0.552 NA NA

Total matches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 352 (9.45%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr01g0004301)
Mean nb of predicted sites per peak: 1.22

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_7nt_test_vs_ctrl_m1

k-mer sig=32.21; evalue=6.2e-33

syaaaGCCCaattcv

BGAATTGGGCTTTRS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor syaaaGCCCaattcv

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 15 1.0000 0.860 0.860 NA NA

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 15 1.0000 0.846 0.846 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.6000 0.874 0.524 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 322 (8.65%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr08g0241621)
Mean nb of predicted sites per peak: 1.22

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_7nt_test_vs_ctrl_m2

k-mer sig=28.72; evalue=1.9e-29

sycaGGCCCaattss

SSAATTGGGCCTGRS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sycaGGCCCaattss

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 15 1.0000 0.986 0.986 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 15 1.0000 0.909 0.909 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.6000 0.995 0.597 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 370 (9.94%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr24g0393341)
Mean nb of predicted sites per peak: 1.24

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 oligos_7nt_test_vs_ctrl_m3

k-mer sig=28.72; evalue=1.9e-29

sycaGGCCCaaayc

GRTTTGGGCCTGRS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sycaGGCCCaaayc

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 14 0.9333 0.953 0.889 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 14 0.9333 0.897 0.837 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.6429 0.958 0.616 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 366 (9.83%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr01g0004301)
Mean nb of predicted sites per peak: 1.28

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 oligos_7nt_test_vs_ctrl_m4

k-mer sig=32.21; evalue=6.2e-33

syaaaGCCCatttkv

BMAAATGGGCTTTRS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor syaaaGCCCatttkv

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 15 1.0000 0.873 0.873 NA NA

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 15 1.0000 0.800 0.800 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.6000 0.825 0.495 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 295 (7.92%)
Max nb of predicted sites per peak: 6
(gene-Lalb_Chr04g0258261)
Mean nb of predicted sites per peak: 1.21

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 oligos_7nt_test_vs_ctrl_m5

k-mer sig=8.00; evalue=1e-08

smtCCaaCGGtCmm

KKGACCGTTGGAKS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor smtCCaaCGGtCmm

MYB3R1:MA1178.2:JASPAR MYB3R1/MA1178.2/JASPAR D 13 0.9286 0.864 0.802 NA NA

ZIM.DAP:M0290:AthalianaCistrome ZIM.DAP/M0290/AthalianaCistrome R 13 0.8125 0.837 0.680 NA NA

MYB73:MA1394.2:JASPAR MYB73/MA1394.2/JASPAR D 11 0.7333 0.844 0.619 NA NA

Total matches= 39 (36 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 197 (5.29%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr16g0389731)
Mean nb of predicted sites per peak: 1.12

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 16 oligos_7nt_test_vs_ctrl_m6

k-mer sig=7.04; evalue=9.1e-08

cyaaaaCCCtaayy

RRTTAGGGTTTTRG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cyaaaaCCCtaayy

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 14 0.9333 0.911 0.850 NA NA

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR D 14 0.9333 0.874 0.816 NA NA

AT1G72740:MA1353.2:JASPAR AT1G72740/MA1353.2/JASPAR R 11 0.7857 0.981 0.771 NA NA

Total matches= 39 (36 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 210 (5.64%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr18g0055751)
Mean nb of predicted sites per peak: 1.09

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 17 oligos_7nt_test_vs_ctrl_m7

k-mer sig=6.95; evalue=1.1e-07

kkttGGCGGGaaard

HYTTTCCCGCCAAMM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kkttGGCGGGaaard

DEL1.ampDAP:M0365:AthalianaCistrome DEL1.ampDAP/M0365/AthalianaCistrome D 14 0.8750 0.945 0.827 NA NA

E2FD:MA1732.1:JASPAR E2FD/MA1732.1/JASPAR D 14 0.8750 0.943 0.825 NA NA

DEL2.ampDAP:M0366:AthalianaCistrome DEL2.ampDAP/M0366/AthalianaCistrome D 14 0.8750 0.943 0.825 NA NA

Total matches= 19 (16 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 223 (5.99%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr24g0399901)
Mean nb of predicted sites per peak: 1.13

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 18 oligos_7nt_test_vs_ctrl_m8

k-mer sig=7.52; evalue=3e-08

rvyCCaaCGGCtamr

YKTAGCCGTTGGRBY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rvyCCaaCGGCtamr

MYB3R3:EEAD0045:EEADannot MYB3R3/EEAD0045/EEADannot R 14 0.9333 0.796 0.743 NA NA

ZIM.DAP:M0290:AthalianaCistrome ZIM.DAP/M0290/AthalianaCistrome R 14 0.8750 0.807 0.706 NA NA

MYB3R1:MA1178.2:JASPAR MYB3R1/MA1178.2/JASPAR D 13 0.8667 0.735 0.637 NA NA

Total matches= 25 (22 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 193 (5.18%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr11g0065791)
Mean nb of predicted sites per peak: 1.11

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 19 oligos_7nt_test_vs_ctrl_m9

k-mer sig=19.56; evalue=2.8e-20

bkraaTGGGCCtgrs

SYCAGGCCCATTYMV

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor bkraaTGGGCCtgrs

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR R 15 1.0000 0.955 0.955 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot D 15 1.0000 0.924 0.924 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR R 9 0.6000 0.963 0.578 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 416 (11.17%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr24g0393341)
Mean nb of predicted sites per peak: 1.27

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 20 oligos_7nt_test_vs_ctrl_m10

k-mer sig=23.70; evalue=2e-24

syygaGCCCaattsr

YSAATTGGGCTCRRS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor syygaGCCCaattsr

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 15 1.0000 0.882 0.882 NA NA

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 15 1.0000 0.825 0.825 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.6000 0.833 0.500 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 347 (9.32%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr24g0393341)
Mean nb of predicted sites per peak: 1.20

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 21 oligos_8nt_test_vs_ctrl_m1

k-mer sig=20.05; evalue=8.9e-21

rsaaaaGCCCaattbr

YVAATTGGGCTTTTSY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rsaaaaGCCCaattbr

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 15 0.9375 0.827 0.775 NA NA

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 15 0.9375 0.813 0.762 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.5625 0.867 0.488 NA NA

Total matches= 11 (8 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 273 (7.33%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr20g0112921)
Mean nb of predicted sites per peak: 1.15

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 22 oligos_8nt_test_vs_ctrl_m2

k-mer sig=14.44; evalue=3.6e-15

sytaGGCCCaaatss

SSATTTGGGCCTARS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sytaGGCCCaaatss

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 15 1.0000 0.924 0.924 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 15 1.0000 0.872 0.872 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.6000 0.944 0.566 NA NA

Total matches= 3

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 347 (9.32%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr18g0053911)
Mean nb of predicted sites per peak: 1.20

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 23 oligos_8nt_test_vs_ctrl_m3

k-mer sig=12.74; evalue=1.8e-13

mscmaaaCCCtaayyc

GRRTTAGGGTTTKGSK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mscmaaaCCCtaayyc

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 15 0.9375 0.940 0.881 NA NA

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR D 15 0.9375 0.894 0.838 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 14 0.8235 0.971 0.799 NA NA

Total matches= 36 (33 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 232 (6.23%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr24g0399901)
Mean nb of predicted sites per peak: 1.11

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 24 oligos_8nt_test_vs_ctrl_m4

k-mer sig=13.76; evalue=1.7e-14

gsaaaaGCCCattabr

YVTAATGGGCTTTTSC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gsaaaaGCCCattabr

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 15 0.9375 0.838 0.785 NA NA

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 15 0.9375 0.758 0.711 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.5625 0.810 0.456 NA NA

Total matches= 16 (13 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 227 (6.10%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr04g0258261)
Mean nb of predicted sites per peak: 1.18

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 25 oligos_8nt_test_vs_ctrl_m5

k-mer sig=6.45; evalue=3.5e-07

smtCCaaCGGtCama

TKTGACCGTTGGAKS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor smtCCaaCGGtCama

MYB3R1:MA1178.2:JASPAR MYB3R1/MA1178.2/JASPAR D 13 0.8667 0.876 0.759 NA NA

MYB73:MA1394.2:JASPAR MYB73/MA1394.2/JASPAR D 12 0.8000 0.884 0.707 NA NA

MYB44:MA2027.1:JASPAR MYB44/MA2027.1/JASPAR D 12 0.8000 0.879 0.703 NA NA

Total matches= 46 (43 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 198 (5.32%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr14g0371611)
Mean nb of predicted sites per peak: 1.12

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 26 oligos_8nt_test_vs_ctrl_m6

k-mer sig=6.02; evalue=9.5e-07

gmtCCaaCGGCtacr

YGTAGCCGTTGGAKC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gmtCCaaCGGCtacr

MYB3R3:EEAD0045:EEADannot MYB3R3/EEAD0045/EEADannot R 14 0.9333 0.823 0.768 NA NA

ZIM.DAP:M0290:AthalianaCistrome ZIM.DAP/M0290/AthalianaCistrome R 14 0.8750 0.797 0.698 NA NA

MYB3R1:MA1178.2:JASPAR MYB3R1/MA1178.2/JASPAR D 13 0.8667 0.727 0.630 NA NA

Total matches= 23 (20 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 194 (5.21%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr04g0249321)
Mean nb of predicted sites per peak: 1.10

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 27 oligos_8nt_test_vs_ctrl_m7

k-mer sig=14.44; evalue=3.6e-15

bkaatTGGGCCtarb

VYTAGGCCCAATTMV

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor bkaatTGGGCCtarb

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR R 15 1.0000 0.966 0.966 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot D 15 1.0000 0.896 0.896 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR R 9 0.6000 0.992 0.595 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 384 (10.31%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr24g0393341)
Mean nb of predicted sites per peak: 1.31

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 28 oligos_8nt_test_vs_ctrl_m8

k-mer sig=20.05; evalue=8.9e-21

ssaaaaGCCCaaatca

TGATTTGGGCTTTTSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssaaaaGCCCaaatca

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 15 0.9375 0.826 0.774 NA NA

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 15 0.9375 0.788 0.739 NA NA

TRB2:MA1355.2:JASPAR TRB2/MA1355.2/JASPAR D 11 0.6875 0.701 0.482 NA NA

Total matches= 12 (9 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 308 (8.27%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr18g0055141)
Mean nb of predicted sites per peak: 1.16

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 29 oligos_8nt_test_vs_ctrl_m9

k-mer sig=4.46; evalue=3.5e-05

ybtttCCCGCCaamh

DKTTGGCGGGAAAVR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ybtttCCCGCCaamh

DEL1.ampDAP:M0365:AthalianaCistrome DEL1.ampDAP/M0365/AthalianaCistrome R 14 0.8750 0.957 0.838 NA NA

E2FD:MA1732.1:JASPAR E2FD/MA1732.1/JASPAR R 14 0.8750 0.956 0.837 NA NA

DEL2.ampDAP:M0366:AthalianaCistrome DEL2.ampDAP/M0366/AthalianaCistrome R 14 0.8750 0.956 0.837 NA NA

Total matches= 20 (17 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 191 (5.13%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr24g0399901)
Mean nb of predicted sites per peak: 1.12

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 30 oligos_8nt_test_vs_ctrl_m10

k-mer sig=20.05; evalue=8.9e-21

ggtgaaGCCCaattmr

YKAATTGGGCTTCACC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ggtgaaGCCCaattmr

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 15 0.9375 0.847 0.794 NA NA

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 15 0.9375 0.847 0.794 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.5625 0.869 0.489 NA NA

Total matches= 3

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 319 (8.57%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr18g0055141)
Mean nb of predicted sites per peak: 1.19

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 31 dyads_test_vs_ctrl_m1

k-mer sig=41.91; evalue=1.2e-42

yyaGGCCCaaacs

SGTTTGGGCCTRR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yyaGGCCCaaacs

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 13 0.8667 0.960 0.832 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 13 0.8667 0.921 0.798 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.6923 0.967 0.669 NA NA

Total matches= 8 (5 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 415 (11.14%)
Max nb of predicted sites per peak: 6
(gene-Lalb_Chr01g0004301)
Mean nb of predicted sites per peak: 1.32

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 32 dyads_test_vs_ctrl_m2

k-mer sig=41.91; evalue=1.2e-42

scraaammaaaGCCCaaattaaar

YTTTAATTTGGGCTTTKKTTTYGS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor scraaammaaaGCCCaaattaaar

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 15 0.6250 0.823 0.514 NA NA

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 15 0.6250 0.788 0.492 NA NA

Total matches= 2

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 251 (6.74%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr20g0112921)
Mean nb of predicted sites per peak: 1.14

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 33 dyads_test_vs_ctrl_m3

k-mer sig=39.60; evalue=2.5e-40

bkawTGGGCCtgr

YCAGGCCCAWTMV

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor bkawTGGGCCtgr

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR R 13 0.8667 0.967 0.838 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot D 13 0.8667 0.960 0.832 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR R 9 0.6923 0.973 0.673 NA NA

Total matches= 22 (19 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 486 (13.05%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr24g0393341)
Mean nb of predicted sites per peak: 1.41

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 34 dyads_test_vs_ctrl_m4

k-mer sig=11.81; evalue=1.5e-12

vyCCaaCGGtCmm

KKGACCGTTGGRB

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor vyCCaaCGGtCmm

MYB3R1:MA1178.2:JASPAR MYB3R1/MA1178.2/JASPAR D 13 1.0000 0.883 0.883 NA NA

ZIM.DAP:M0290:AthalianaCistrome ZIM.DAP/M0290/AthalianaCistrome R 13 0.8667 0.832 0.721 NA NA

MYB73:MA1394.2:JASPAR MYB73/MA1394.2/JASPAR D 11 0.7857 0.854 0.671 NA NA

Total matches= 63 (60 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 195 (5.24%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr16g0389731)
Mean nb of predicted sites per peak: 1.13

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 35 dyads_test_vs_ctrl_m5

k-mer sig=13.79; evalue=1.6e-14

vcaaaaaCCCaas

STTGGGTTTTTGB

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor vcaaaaaCCCaas

AT1G76870:MA1367.1:JASPAR AT1G76870/MA1367.1/JASPAR D 13 0.9286 0.721 0.669 NA NA

TRP5:MA1802.1:JASPAR TRP5/MA1802.1/JASPAR D 10 0.7692 0.809 0.622 NA NA

TRB1:MA2032.2:JASPAR TRB1/MA2032.2/JASPAR D 9 0.6923 0.808 0.559 NA NA

Total matches= 11 (8 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 194 (5.21%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr09g0326301)
Mean nb of predicted sites per peak: 1.10

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 36 dyads_test_vs_ctrl_m6

k-mer sig=11.81; evalue=1.5e-12

myCCaaCGGCym

KRGCCGTTGGRK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor myCCaaCGGCym

MYB3R1:MA1178.2:JASPAR MYB3R1/MA1178.2/JASPAR D 12 0.9231 0.785 0.725 NA NA

ZIM.DAP:M0290:AthalianaCistrome ZIM.DAP/M0290/AthalianaCistrome R 12 0.8000 0.843 0.675 NA NA

MYB3R3:EEAD0045:EEADannot MYB3R3/EEAD0045/EEADannot R 12 0.8571 0.781 0.669 NA NA

Total matches= 71 (68 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 227 (6.10%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr19g0134511)
Mean nb of predicted sites per peak: 1.15

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 37 dyads_test_vs_ctrl_m7

k-mer sig=41.91; evalue=1.2e-42

bsaaaKsSSsccsssswwatttttass

SSTAAAAATWWSSSSGGSSSSMTTTSV

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor bsaaaKsSSsccsssswwatttttass

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 75 (2.01%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr21g0308571)
Mean nb of predicted sites per peak: 1.07

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 38 dyads_test_vs_ctrl_m8

k-mer sig=41.91; evalue=1.2e-42

staTTRSSSymmcyybatwwwattasb

VSTAATWWWATVRRGKKRSSSYAATAS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor staTTRSSSymmcyybatwwwattasb

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 100 (2.69%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr25g0283981)
Mean nb of predicted sites per peak: 1.07

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 39 dyads_test_vs_ctrl_m9

k-mer sig=41.91; evalue=1.2e-42

btaaTgSSScmmvcsaaatttasttasy

RSTAASTAAATTTSGBKKGSSSCATTAV

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor btaaTgSSScmmvcsaaatttasttasy

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 88 (2.36%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr07g0177101)
Mean nb of predicted sites per peak: 1.03

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 40 dyads_test_vs_ctrl_m10

k-mer sig=41.91; evalue=1.2e-42

gktttGGGCCCaaamy

RKTTTGGGCCCAAAMC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gktttGGGCCCaaamy

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR R 14 0.8235 0.764 0.629 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot D 14 0.8235 0.762 0.628 NA NA

LOC_Os02g42380:M1657_1.02:CISBP LOC_Os02g42380/M1657_1.02/CISBP D 10 0.6250 0.802 0.501 NA NA

Total matches= 23 (20 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 207 (5.56%)
Max nb of predicted sites per peak: 6
(gene-Lalb_Chr08g0239291)
Mean nb of predicted sites per peak: 2.04

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]
Discovered motifs versus transcription factor databases
Motifs versus footprintDB-plants database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: MEblack_Up4 (25/05/2025 13:18)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor bsaaaKsSSsccsssswwatttttass

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor staTTRSSSymmcyybatwwwattasb

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor btaaTgSSScmmvcsaaatttasttasy

Total matches= 0

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

RSAT - peak-motifs result

Analysis: MEblack_Up4 (25/05/2025 13:18)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor bsaaaKsSSsccsssswwatttttass Total matches= 0

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor staTTRSSSymmcyybatwwwattasb Total matches= 0

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor btaaTgSSScmmvcsaaatttasttasy Total matches= 0

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor bsaaaKsSSsccsssswwatttttass

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor staTTRSSSymmcyybatwwwattasb

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor btaaTgSSScmmvcsaaatttasttasy

Total matches= 0