peak-motifs MEgreenyellow

Motif discovery

Motif 1 oligos_6nt_test_vs_ctrl_m1

k-mer sig=10.32; evalue=4.8e-11

btCAGATCtGrr

YYCAGATCTGAV

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor btCAGATCtGrr

GATA9:MA1018.1:JASPAR GATA9/MA1018.1/JASPAR D 11 0.9167 0.898 0.824 NA NA

GATA9:M0768_1.02:CISBP GATA9/M0768_1.02/CISBP D 11 0.9167 0.898 0.823 NA NA

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome R 12 0.8571 0.899 0.771 NA NA

Total matches= 56 (53 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 98 (9.77%)
Max nb of predicted sites per peak: 7
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.98

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_test_vs_ctrl_m2

k-mer sig=3.37; evalue=0.00043

yvtCaCatGyc

GRCATGTGABR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yvtCaCatGyc

fgenesh1_pg.scaffold_37000071:M0251_1.02:CISBP fgenesh1_pg.scaffold_37000071/M0251_1.02/CISBP D 10 0.9091 0.796 0.724 NA NA

PHYPADRAFT_72483:MA1011.1:JASPAR PHYPADRAFT_72483/MA1011.1/JASPAR D 10 0.9091 0.796 0.723 NA NA

BIM1:MA0964.2:JASPAR BIM1/MA0964.2/JASPAR D 11 0.9167 0.775 0.711 NA NA

Total matches= 121 (118 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 255 (25.42%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr23g0278301)
Mean nb of predicted sites per peak: 1.25

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_test_vs_ctrl_m3

k-mer sig=10.32; evalue=4.8e-11

yyCAGATCtarrk

MYYTAGATCTGRR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yyCAGATCtarrk

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome R 13 0.9286 0.870 0.807 NA NA

GATA11.DAP:M0284:AthalianaCistrome GATA11.DAP/M0284/AthalianaCistrome R 13 0.8667 0.911 0.790 NA NA

GATA9:M0768_1.02:CISBP GATA9/M0768_1.02/CISBP R 11 0.8462 0.922 0.780 NA NA

Total matches= 53 (50 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 103 (10.27%)
Max nb of predicted sites per peak: 6
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.37

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_test_vs_ctrl_m4

k-mer sig=2.87; evalue=0.0013

ywaCttAttaaawk

MWTTTAATAAGTWR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ywaCttAttaaawk

ZHD1:MA1329.2:JASPAR ZHD1/MA1329.2/JASPAR D 13 0.9286 0.768 0.714 NA NA

WOX11.DAP:M0422:AthalianaCistrome WOX11.DAP/M0422/AthalianaCistrome R 11 0.7857 0.712 0.560 NA NA

WOX11:UN0413.1:JASPAR WOX11/UN0413.1/JASPAR R 11 0.7857 0.712 0.560 NA NA

Total matches= 43 (40 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 95 (9.47%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr21g0318491)
Mean nb of predicted sites per peak: 1.09

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_test_vs_ctrl_m5

k-mer sig=2.79; evalue=0.0016

rrCCGttAarv

BYTTAACGGYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrCCGttAarv

MYB98:M1333_1.02:CISBP MYB98/M1333_1.02/CISBP D 11 1.0000 0.772 0.772 NA NA

MYB52:MYB52:ArabidopsisPBM MYB52/MYB52/ArabidopsisPBM R 10 0.9091 0.824 0.749 NA NA

MYB98:MA1392.2:JASPAR MYB98/MA1392.2/JASPAR D 11 1.0000 0.742 0.742 NA NA

Total matches= 94 (91 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 74 (7.38%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr24g0396971)
Mean nb of predicted sites per peak: 1.05

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 oligos_7nt_test_vs_ctrl_m1

k-mer sig=13.45; evalue=3.5e-14

rwtCaGatCtGawy

RWTCAGATCTGAWY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rwtCaGatCtGawy

GATA4.DAP:M0287:AthalianaCistrome GATA4.DAP/M0287/AthalianaCistrome D 14 0.9333 0.850 0.793 NA NA

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome R 13 0.8667 0.871 0.755 NA NA

GATA11.DAP:M0284:AthalianaCistrome GATA11.DAP/M0284/AthalianaCistrome D 13 0.8125 0.883 0.718 NA NA

Total matches= 40 (37 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 77 (7.68%)
Max nb of predicted sites per peak: 6
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 2.16

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 oligos_7nt_test_vs_ctrl_m2

k-mer sig=13.45; evalue=3.5e-14

mytCaGATCtara

TYTAGATCTGARK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mytCaGATCtara

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome D 13 0.9286 0.883 0.820 NA NA

GATA14:MA1325.1:JASPAR GATA14/MA1325.1/JASPAR R 13 0.8667 0.918 0.795 NA NA

GATA12.DAP:M0285:AthalianaCistrome GATA12.DAP/M0285/AthalianaCistrome D 12 0.8571 0.893 0.766 NA NA

Total matches= 58 (55 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 152 (15.15%)
Max nb of predicted sites per peak: 8
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.25

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_7nt_test_vs_ctrl_m3

k-mer sig=1.62; evalue=0.024

ssTTAATAaask

MSTTTATTAASS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssTTAATAaask

ATHB23.ampDAP:M0855:AthalianaCistrome ATHB23.ampDAP/M0855/AthalianaCistrome R 11 0.9167 0.784 0.718 NA NA

ZHD10:MA1807.1:JASPAR ZHD10/MA1807.1/JASPAR R 11 0.9167 0.784 0.718 NA NA

ATHB25.ampDAP:M0853:AthalianaCistrome ATHB25.ampDAP/M0853/AthalianaCistrome R 11 0.9167 0.778 0.713 NA NA

Total matches= 66 (63 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 250 (24.93%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr10g0101381)
Mean nb of predicted sites per peak: 1.17

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 oligos_7nt_test_vs_ctrl_m4

k-mer sig=0.81; evalue=0.15

skAaATAAGyr

YRCTTATTTMS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor skAaATAAGyr

AT5G04760:MA2031.1:JASPAR AT5G04760/MA2031.1/JASPAR R 11 1.0000 0.735 0.735 NA NA

CDF5:UN0360.1:JASPAR CDF5/UN0360.1/JASPAR D 10 0.9091 0.706 0.642 NA NA

DOF2.2:MA1272.2:JASPAR DOF2.2/MA1272.2/JASPAR D 10 0.9091 0.701 0.637 NA NA

Total matches= 39 (36 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 326 (32.50%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr21g0309751)
Mean nb of predicted sites per peak: 1.25

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_7nt_test_vs_ctrl_m5

k-mer sig=0.74; evalue=0.18

crGATCCGArc

GYTCGGATCYG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor crGATCCGArc

GATA19:MA1323.1:JASPAR GATA19/MA1323.1/JASPAR D 11 1.0000 0.870 0.870 NA NA

GATA19.ampDAP:M0295:AthalianaCistrome GATA19.ampDAP/M0295/AthalianaCistrome D 11 1.0000 0.861 0.861 NA NA

GATA1:MA2388.1:JASPAR GATA1/MA2388.1/JASPAR D 10 0.9091 0.824 0.749 NA NA

Total matches= 67 (64 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 87 (8.67%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr06g0167851)
Mean nb of predicted sites per peak: 1.28

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_8nt_test_vs_ctrl_m1

k-mer sig=10.53; evalue=3e-11

grttCaGatCtGaabc

GVTTCAGATCTGAAYC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor grttCaGatCtGaabc

GATA4.DAP:M0287:AthalianaCistrome GATA4.DAP/M0287/AthalianaCistrome R 15 0.9375 0.837 0.785 NA NA

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome D 14 0.8750 0.859 0.751 NA NA

GATA11.DAP:M0284:AthalianaCistrome GATA11.DAP/M0284/AthalianaCistrome D 14 0.8235 0.872 0.718 NA NA

Total matches= 33 (30 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 88 (8.77%)
Max nb of predicted sites per peak: 6
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 2.17

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_8nt_test_vs_ctrl_m2

k-mer sig=10.53; evalue=3e-11

kwttCaGaTCtaaat

ATTTAGATCTGAAWM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kwttCaGaTCtaaat

GATA4.DAP:M0287:AthalianaCistrome GATA4.DAP/M0287/AthalianaCistrome R 15 1.0000 0.834 0.834 NA NA

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome D 14 0.9333 0.854 0.797 NA NA

GATA12.DAP:M0285:AthalianaCistrome GATA12.DAP/M0285/AthalianaCistrome D 13 0.8667 0.886 0.768 NA NA

Total matches= 43 (40 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 133 (13.26%)
Max nb of predicted sites per peak: 7
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.26

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 oligos_8nt_test_vs_ctrl_m3

k-mer sig=10.53; evalue=3e-11

rdctCaGAtCtGaawc

GWTTCAGATCTGAGHY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rdctCaGAtCtGaawc

GATA4.DAP:M0287:AthalianaCistrome GATA4.DAP/M0287/AthalianaCistrome D 15 0.9375 0.835 0.782 NA NA

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome R 14 0.8750 0.855 0.748 NA NA

GATA11.DAP:M0284:AthalianaCistrome GATA11.DAP/M0284/AthalianaCistrome R 14 0.8235 0.885 0.729 NA NA

Total matches= 33 (30 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 119 (11.86%)
Max nb of predicted sites per peak: 7
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.64

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 oligos_8nt_test_vs_ctrl_m4

k-mer sig=0.86; evalue=0.14

yyCTCACTCayy

RRTGAGTGAGRR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yyCTCACTCayy

AT3G46070:MA1381.1:JASPAR AT3G46070/MA1381.1/JASPAR D 12 0.8000 0.837 0.669 NA NA

AZF1:MA2372.1:JASPAR AZF1/MA2372.1/JASPAR D 9 0.7500 0.809 0.607 NA NA

WOX13:WOX13:ArabidopsisPBM WOX13/WOX13/ArabidopsisPBM D 10 0.8333 0.702 0.585 NA NA

Total matches= 28 (25 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 190 (18.94%)
Max nb of predicted sites per peak: 7
(gene-Lalb_Chr16g0382351)
Mean nb of predicted sites per peak: 1.33

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 oligos_8nt_test_vs_ctrl_m5

k-mer sig=0.78; evalue=0.17

yyCAGATCCAav

BTTGGATCTGRR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yyCAGATCCAav

AGP1:AGP1:Athamap AGP1/AGP1/Athamap D 10 0.8333 0.845 0.704 NA NA

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome R 12 0.8571 0.802 0.688 NA NA

GATA9:MA1018.1:JASPAR GATA9/MA1018.1/JASPAR R 11 0.9167 0.733 0.672 NA NA

Total matches= 52 (49 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 109 (10.87%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr04g0259911)
Mean nb of predicted sites per peak: 1.10

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 16 dyads_test_vs_ctrl_m1

k-mer sig=10.26; evalue=5.5e-11

mgaatCaGATCtGattck

MGAATCAGATCTGATTCK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mgaatCaGATCtGattck

GATA11.DAP:M0284:AthalianaCistrome GATA11.DAP/M0284/AthalianaCistrome D 15 0.8333 0.881 0.734 NA NA

GATA4.DAP:M0287:AthalianaCistrome GATA4.DAP/M0287/AthalianaCistrome D 15 0.8333 0.844 0.703 NA NA

GATA14:MA1325.1:JASPAR GATA14/MA1325.1/JASPAR D 15 0.8333 0.840 0.700 NA NA

Total matches= 26 (23 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 89 (8.87%)
Max nb of predicted sites per peak: 7
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 2.02

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 17 dyads_test_vs_ctrl_m2

k-mer sig=10.26; evalue=5.5e-11

mrCCasvkCkGmrhdstaaCGrs

SYCGTTASHDYKCMGMBSTGGYK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mrCCasvkCkGmrhdstaaCGrs

MYB98:MA1392.1:JASPAR MYB98/MA1392.1/JASPAR D 13 0.5200 0.810 0.421 NA NA

MYB105.ampDAP:M0551:AthalianaCistrome MYB105.ampDAP/M0551/AthalianaCistrome D 14 0.5385 0.747 0.402 NA NA

Total matches= 2

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 93 (9.27%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr15g0088981)
Mean nb of predicted sites per peak: 1.15

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 18 dyads_test_vs_ctrl_m3

k-mer sig=10.26; evalue=5.5e-11

vbaatsGgcCsKwKyawttwwwttass

SSTAAWWWAAWTRMWMSGGCCSATTVB

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor vbaatsGgcCsKwKyawttwwwttass

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 80 (7.98%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr24g0395171)
Mean nb of predicted sites per peak: 1.04

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 19 dyads_test_vs_ctrl_m4

k-mer sig=10.26; evalue=5.5e-11

rrtaASakmtsyswgwwacaatgg

CCATTGTWWCWSRSAKMTSTTAYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrtaASakmtsyswgwwacaatgg

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 72 (7.18%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr21g0308381)
Mean nb of predicted sites per peak: 1.08

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 20 dyads_test_vs_ctrl_m5

k-mer sig=10.26; evalue=5.5e-11

mgaatsGGcCSGsGywtatsg

CSATAWRCSCSGGCCSATTCK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mgaatsGGcCSGsGywtatsg

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 124 (12.36%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr14g0364001)
Mean nb of predicted sites per peak: 1.21

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]
Discovered motifs versus transcription factor databases
Motifs versus footprintDB-plants database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: MEgreenyellow_Up1 (25/05/2025 14:03)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor vbaatsGgcCsKwKyawttwwwttass

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrtaASakmtsyswgwwacaatgg

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mgaatsGGcCSGsGywtatsg

Total matches= 0

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

RSAT - peak-motifs result

Analysis: MEgreenyellow_Up1 (25/05/2025 14:03)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor vbaatsGgcCsKwKyawttwwwttass Total matches= 0

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor rrtaASakmtsyswgwwacaatgg Total matches= 0

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor mgaatsGGcCSGsGywtatsg Total matches= 0

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor vbaatsGgcCsKwKyawttwwwttass

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrtaASakmtsyswgwwacaatgg

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mgaatsGGcCSGsGywtatsg

Total matches= 0