peak-motifs MEgreenyellow

Motif discovery

Motif 1 oligos_6nt_test_vs_ctrl_m1

k-mer sig=21.47; evalue=3.4e-22

rbtCaGATCtGart

AYTCAGATCTGAVY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rbtCaGATCtGart

GATA4.DAP:M0287:AthalianaCistrome GATA4.DAP/M0287/AthalianaCistrome D 14 0.9333 0.880 0.821 NA NA

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome R 13 0.8667 0.897 0.778 NA NA

GATA11.DAP:M0284:AthalianaCistrome GATA11.DAP/M0284/AthalianaCistrome D 13 0.8125 0.914 0.743 NA NA

Total matches= 45 (42 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 80 (7.98%)
Max nb of predicted sites per peak: 8
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.95

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_test_vs_ctrl_m2

k-mer sig=21.47; evalue=3.4e-22

wytCAGATCtrart

AYTYAGATCTGARW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wytCAGATCtrart

GATA4.DAP:M0287:AthalianaCistrome GATA4.DAP/M0287/AthalianaCistrome R 14 0.9333 0.873 0.815 NA NA

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome R 13 0.8667 0.901 0.781 NA NA

GATA11.DAP:M0284:AthalianaCistrome GATA11.DAP/M0284/AthalianaCistrome R 13 0.8125 0.938 0.762 NA NA

Total matches= 55 (52 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 108 (10.77%)
Max nb of predicted sites per peak: 7
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.32

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_test_vs_ctrl_m3

k-mer sig=5.29; evalue=5.1e-06

gggCCaCGtGGsss

SSSCCACGTGGCCC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gggCCaCGtGGsss

BPE:MA1359.2:JASPAR BPE/MA1359.2/JASPAR R 14 1.0000 0.944 0.944 NA NA

BHLH74:MA1360.2:JASPAR BHLH74/MA1360.2/JASPAR D 14 1.0000 0.911 0.911 NA NA

BZR1:MA0550.1:JASPAR BZR1/MA0550.1/JASPAR R 14 1.0000 0.883 0.883 NA NA

Total matches= 229 (226 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 116 (11.57%)
Max nb of predicted sites per peak: 6
(gene-Lalb_Chr21g0309481)
Mean nb of predicted sites per peak: 2.09

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_test_vs_ctrl_m4

k-mer sig=2.13; evalue=0.0074

rrACaGaGar

YTCTCTGTYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrACaGaGar

REF6:MA1415.1:JASPAR REF6/MA1415.1/JASPAR D 10 0.9091 0.913 0.830 NA NA

REF6:MA1415.2:JASPAR REF6/MA1415.2/JASPAR D 8 0.7273 0.930 0.677 NA NA

Lysine-specific:6jnm_A:3D-footprint Lysine-specific/6jnm_A/3D-footprint R 7 0.7000 0.887 0.621 NA NA

Total matches= 13 (10 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 194 (19.34%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr21g0311681)
Mean nb of predicted sites per peak: 1.16

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_test_vs_ctrl_m5

k-mer sig=1.92; evalue=0.012

cmATCTCAwy

RWTGAGATKG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cmATCTCAwy

fgenesh1_pg.C_Chr_07.0001000042:M0808_1.02:CISBP fgenesh1_pg.C_Chr_07.0001000042/M0808_1.02/CISBP D 10 1.0000 0.741 0.741 NA NA

TIFY2A:M0760_1.02:CISBP TIFY2A/M0760_1.02/CISBP R 7 0.7000 0.800 0.560 NA NA

ARR1:MA0945.2:JASPAR ARR1/MA0945.2/JASPAR D 6 0.6000 0.909 0.545 NA NA

Total matches= 40 (37 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 225 (22.43%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr25g0289571)
Mean nb of predicted sites per peak: 1.17

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 oligos_6nt_test_vs_ctrl_m6

k-mer sig=21.23; evalue=5.9e-22

yytCaGATCCra

TYGGATCTGARR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yytCaGATCCra

GATA12.DAP:M0285:AthalianaCistrome GATA12.DAP/M0285/AthalianaCistrome D 12 0.9231 0.865 0.799 NA NA

GATA19:MA1323.1:JASPAR GATA19/MA1323.1/JASPAR R 11 0.9167 0.833 0.763 NA NA

GATA19.ampDAP:M0295:AthalianaCistrome GATA19.ampDAP/M0295/AthalianaCistrome R 11 0.9167 0.823 0.754 NA NA

Total matches= 66 (63 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 125 (12.46%)
Max nb of predicted sites per peak: 7
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.23

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 oligos_6nt_test_vs_ctrl_m7

k-mer sig=1.35; evalue=0.045

gsttaATaAaasr

YSTTTTATTAASC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gsttaATaAaasr

ATHB23.ampDAP:M0855:AthalianaCistrome ATHB23.ampDAP/M0855/AthalianaCistrome R 11 0.8462 0.732 0.620 NA NA

ZHD10:MA1807.1:JASPAR ZHD10/MA1807.1/JASPAR R 11 0.8462 0.732 0.620 NA NA

ATHB24:MA1330.1:JASPAR ATHB24/MA1330.1/JASPAR R 13 0.8667 0.701 0.607 NA NA

Total matches= 40 (37 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 28 (2.79%)
Max nb of predicted sites per peak: 1
(gene-Lalb_Chr23g0277901)
Mean nb of predicted sites per peak: 1.00

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_6nt_test_vs_ctrl_m8

k-mer sig=0.86; evalue=0.14

yyaTTCaCtCtcy

RGAGAGTGAATRR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yyaTTCaCtCtcy

AT3G46070:MA1381.1:JASPAR AT3G46070/MA1381.1/JASPAR D 13 0.8667 0.818 0.709 NA NA

AZF1:MA2372.1:JASPAR AZF1/MA2372.1/JASPAR D 9 0.6923 0.840 0.581 NA NA

At5g04390.DAP:M0308:AthalianaCistrome At5g04390.DAP/M0308/AthalianaCistrome R 10 0.7143 0.788 0.563 NA NA

Total matches= 13 (10 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 134 (13.36%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr22g0355851)
Mean nb of predicted sites per peak: 1.08

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 oligos_6nt_test_vs_ctrl_m9

k-mer sig=0.77; evalue=0.17

mrACACaGwg

CWCTGTGTYK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mrACACaGwg

Lysine-specific:6jnm_A:3D-footprint Lysine-specific/6jnm_A/3D-footprint R 7 0.7000 0.894 0.626 NA NA

REF6:MA1415.2:JASPAR REF6/MA1415.2/JASPAR D 8 0.7273 0.711 0.517 NA NA

REM1:REM1_2:ArabidopsisPBM REM1/REM1_2/ArabidopsisPBM R 8 0.6667 0.742 0.495 NA NA

Total matches= 13 (10 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 171 (17.05%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr01g0005661)
Mean nb of predicted sites per peak: 1.11

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_6nt_test_vs_ctrl_m10

k-mer sig=0.90; evalue=0.13

rstTAaTAatab

VTATTATTAASY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rstTAaTAatab

Zm00001d005692:MA1824.1:JASPAR Zm00001d005692/MA1824.1/JASPAR D 11 0.8462 0.817 0.691 NA NA

ATHB25.ampDAP:M0853:AthalianaCistrome ATHB25.ampDAP/M0853/AthalianaCistrome R 11 0.9167 0.748 0.685 NA NA

ATHB23.ampDAP:M0855:AthalianaCistrome ATHB23.ampDAP/M0855/AthalianaCistrome R 11 0.9167 0.747 0.685 NA NA

Total matches= 91 (88 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 63 (6.28%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.02

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_7nt_test_vs_ctrl_m1

k-mer sig=22.08; evalue=8.3e-23

rwtCaGATCtGary

RYTCAGATCTGAWY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rwtCaGATCtGary

GATA4.DAP:M0287:AthalianaCistrome GATA4.DAP/M0287/AthalianaCistrome D 14 0.9333 0.867 0.809 NA NA

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome R 13 0.8667 0.890 0.771 NA NA

GATA11.DAP:M0284:AthalianaCistrome GATA11.DAP/M0284/AthalianaCistrome D 13 0.8125 0.902 0.733 NA NA

Total matches= 40 (37 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 75 (7.48%)
Max nb of predicted sites per peak: 6
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.84

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_7nt_test_vs_ctrl_m2

k-mer sig=22.08; evalue=8.3e-23

wttCaGATCtaawts

SAWTTAGATCTGAAW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wttCaGATCtaawts

GATA4.DAP:M0287:AthalianaCistrome GATA4.DAP/M0287/AthalianaCistrome D 15 1.0000 0.840 0.840 NA NA

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome R 14 0.9333 0.884 0.825 NA NA

GATA11.DAP:M0284:AthalianaCistrome GATA11.DAP/M0284/AthalianaCistrome R 14 0.8750 0.925 0.809 NA NA

Total matches= 45 (42 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 114 (11.37%)
Max nb of predicted sites per peak: 7
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.27

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 oligos_7nt_test_vs_ctrl_m3

k-mer sig=18.05; evalue=8.9e-19

kyTCAGATCCrwa

TWYGGATCTGARM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kyTCAGATCCrwa

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome D 13 0.9286 0.788 0.732 NA NA

GATA12.DAP:M0285:AthalianaCistrome GATA12.DAP/M0285/AthalianaCistrome D 12 0.8571 0.841 0.720 NA NA

GATA4.DAP:M0287:AthalianaCistrome GATA4.DAP/M0287/AthalianaCistrome R 13 0.8667 0.829 0.718 NA NA

Total matches= 57 (54 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 104 (10.37%)
Max nb of predicted sites per peak: 7
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.18

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 oligos_7nt_test_vs_ctrl_m4

k-mer sig=1.29; evalue=0.051

rrASAGAGArr

YYTCTCTSTYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrASAGAGArr

CURE3UTR1:EEAD0076:EEADannot CURE3UTR1/EEAD0076/EEADannot R 10 0.9091 0.784 0.713 NA NA

REF6:MA1415.1:JASPAR REF6/MA1415.1/JASPAR D 10 0.8333 0.835 0.696 NA NA

REF6:MA1415.2:JASPAR REF6/MA1415.2/JASPAR D 8 0.6667 0.922 0.614 NA NA

Total matches= 14 (11 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 269 (26.82%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr06g0169411)
Mean nb of predicted sites per peak: 1.52

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 oligos_7nt_test_vs_ctrl_m5

k-mer sig=22.08; evalue=8.3e-23

rkwCaGATCtGard

HYTCAGATCTGWMY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rkwCaGATCtGard

GATA4.DAP:M0287:AthalianaCistrome GATA4.DAP/M0287/AthalianaCistrome D 14 0.9333 0.864 0.806 NA NA

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome R 13 0.8667 0.871 0.755 NA NA

GATA11.DAP:M0284:AthalianaCistrome GATA11.DAP/M0284/AthalianaCistrome D 13 0.8125 0.904 0.735 NA NA

Total matches= 47 (44 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 92 (9.17%)
Max nb of predicted sites per peak: 7
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.54

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 16 oligos_7nt_test_vs_ctrl_m6

k-mer sig=1.21; evalue=0.062

rbsACGTGGCrv

BYGCCACGTSVY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rbsACGTGGCrv

GBF2:MA1672.1:JASPAR GBF2/MA1672.1/JASPAR D 12 0.9231 0.971 0.897 NA NA

bZIP11:bZIP10_1:EEAD0108:EEADannot bZIP11:bZIP10_1/EEAD0108/EEADannot R 11 0.9167 0.963 0.883 NA NA

bZIP2:bZIP9_1:EEAD0118:EEADannot bZIP2:bZIP9_1/EEAD0118/EEADannot D 11 0.9167 0.963 0.883 NA NA

Total matches= 281 (278 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 156 (15.55%)
Max nb of predicted sites per peak: 6
(gene-Lalb_Chr10g0098911)
Mean nb of predicted sites per peak: 1.37

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 17 oligos_7nt_test_vs_ctrl_m7

k-mer sig=0.95; evalue=0.11

grGAGAGAGArr

YYTCTCTCTCYC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor grGAGAGAGArr

CURE3UTR1:EEAD0076:EEADannot CURE3UTR1/EEAD0076/EEADannot R 10 0.8333 0.974 0.812 NA NA

BPC1.ampDAP:M0149:AthalianaCistrome BPC1.ampDAP/M0149/AthalianaCistrome R 12 0.8000 0.942 0.754 NA NA

FRS9.DAP:M0713:AthalianaCistrome FRS9.DAP/M0713/AthalianaCistrome R 12 0.5714 0.930 0.531 NA NA

Total matches= 8 (5 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 327 (32.60%)
Max nb of predicted sites per peak: 11
(gene-Lalb_Chr19g0127331)
Mean nb of predicted sites per peak: 2.10

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 18 oligos_7nt_test_vs_ctrl_m8

k-mer sig=0.83; evalue=0.15

ytAtCTCaThm

KDATGAGATAR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ytAtCTCaThm

TIFY2A:M0760_1.02:CISBP TIFY2A/M0760_1.02/CISBP R 7 0.6364 0.775 0.493 NA NA

ARR1:MA0945.2:JASPAR ARR1/MA0945.2/JASPAR D 6 0.5455 0.895 0.488 NA NA

ARR10:MA0121.2:JASPAR ARR10/MA0121.2/JASPAR R 6 0.5000 0.924 0.462 NA NA

Total matches= 19 (16 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 150 (14.96%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr02g0150121)
Mean nb of predicted sites per peak: 1.11

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 19 oligos_7nt_test_vs_ctrl_m9

k-mer sig=0.79; evalue=0.16

atCtGAatCtr

YAGATTCAGAT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor atCtGAatCtr

AT1G25550:M1320_1.02:CISBP AT1G25550/M1320_1.02/CISBP R 10 0.9091 0.751 0.683 NA NA

LOC_Os02g22020:M1363_1.02:CISBP LOC_Os02g22020/M1363_1.02/CISBP R 10 0.9091 0.746 0.678 NA NA

AT1G68670:M1321_1.02:CISBP AT1G68670/M1321_1.02/CISBP D 10 0.9091 0.734 0.667 NA NA

Total matches= 43 (40 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 72 (7.18%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.12

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 20 oligos_7nt_test_vs_ctrl_m10

k-mer sig=0.50; evalue=0.32

ycACGTGtCws

SWGACACGTGR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ycACGTGtCws

LEC1-A:UN0424.1:JASPAR LEC1-A/UN0424.1/JASPAR D 11 1.0000 0.899 0.899 NA NA

ABF3:MA0930.2:JASPAR ABF3/MA0930.2/JASPAR D 10 0.9091 0.953 0.866 NA NA

GLYMA-08G357600:UN0420.1:JASPAR GLYMA-08G357600/UN0420.1/JASPAR D 10 0.9091 0.949 0.863 NA NA

Total matches= 322 (319 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 114 (11.37%)
Max nb of predicted sites per peak: 6
(gene-Lalb_Chr10g0098911)
Mean nb of predicted sites per peak: 1.32

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 21 oligos_8nt_test_vs_ctrl_m1

k-mer sig=17.70; evalue=2e-18

gattCaGATCtGaatc

GATTCAGATCTGAATC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gattCaGATCtGaatc

GATA4.DAP:M0287:AthalianaCistrome GATA4.DAP/M0287/AthalianaCistrome R 15 0.9375 0.861 0.807 NA NA

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome D 14 0.8750 0.882 0.772 NA NA

GATA11.DAP:M0284:AthalianaCistrome GATA11.DAP/M0284/AthalianaCistrome D 14 0.8235 0.895 0.737 NA NA

Total matches= 33 (30 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 75 (7.48%)
Max nb of predicted sites per peak: 8
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.95

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 22 oligos_8nt_test_vs_ctrl_m2

k-mer sig=17.70; evalue=2e-18

kwttCaGATCtaaat

ATTTAGATCTGAAWM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kwttCaGATCtaaat

GATA4.DAP:M0287:AthalianaCistrome GATA4.DAP/M0287/AthalianaCistrome R 15 1.0000 0.829 0.829 NA NA

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome D 14 0.9333 0.850 0.794 NA NA

GATA12.DAP:M0285:AthalianaCistrome GATA12.DAP/M0285/AthalianaCistrome D 13 0.8667 0.889 0.770 NA NA

Total matches= 42 (39 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 97 (9.67%)
Max nb of predicted sites per peak: 7
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.32

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 23 oligos_8nt_test_vs_ctrl_m3

k-mer sig=4.63; evalue=2.3e-05

rrttaGatCtaakt

AMTTAGATCTAAYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrttaGatCtaakt

GATA4.DAP:M0287:AthalianaCistrome GATA4.DAP/M0287/AthalianaCistrome D 14 0.9333 0.794 0.741 NA NA

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome R 13 0.8667 0.842 0.730 NA NA

GATA14:MA1325.1:JASPAR GATA14/MA1325.1/JASPAR D 13 0.8125 0.863 0.701 NA NA

Total matches= 34 (31 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 51 (5.08%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr23g0267771)
Mean nb of predicted sites per peak: 1.71

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 24 oligos_8nt_test_vs_ctrl_m4

k-mer sig=17.70; evalue=2e-18

rwctCaGATCtGaawc

GWTTCAGATCTGAGWY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rwctCaGATCtGaawc

GATA4.DAP:M0287:AthalianaCistrome GATA4.DAP/M0287/AthalianaCistrome D 15 0.9375 0.849 0.796 NA NA

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome R 14 0.8750 0.871 0.762 NA NA

GATA11.DAP:M0284:AthalianaCistrome GATA11.DAP/M0284/AthalianaCistrome R 14 0.8235 0.901 0.742 NA NA

Total matches= 33 (30 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 79 (7.88%)
Max nb of predicted sites per peak: 8
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.67

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 25 oligos_8nt_test_vs_ctrl_m5

k-mer sig=5.63; evalue=2.3e-06

kdtGGatCtGaarc

GYTTCAGATCCAHM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kdtGGatCtGaarc

GATA12.DAP:M0285:AthalianaCistrome GATA12.DAP/M0285/AthalianaCistrome R 13 0.9286 0.824 0.765 NA NA

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome R 14 1.0000 0.738 0.738 NA NA

GATA4.DAP:M0287:AthalianaCistrome GATA4.DAP/M0287/AthalianaCistrome D 14 0.9333 0.783 0.731 NA NA

Total matches= 39 (36 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 118 (11.76%)
Max nb of predicted sites per peak: 8
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.11

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 26 oligos_8nt_test_vs_ctrl_m6

k-mer sig=17.70; evalue=2e-18

gwttCAGATCtrGaw

WTCYAGATCTGAAWC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gwttCAGATCtrGaw

GATA4.DAP:M0287:AthalianaCistrome GATA4.DAP/M0287/AthalianaCistrome R 15 1.0000 0.858 0.858 NA NA

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome D 14 0.9333 0.872 0.813 NA NA

GATA12.DAP:M0285:AthalianaCistrome GATA12.DAP/M0285/AthalianaCistrome D 13 0.8667 0.893 0.774 NA NA

Total matches= 41 (38 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 102 (10.17%)
Max nb of predicted sites per peak: 7
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.27

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 27 oligos_8nt_test_vs_ctrl_m7

k-mer sig=17.70; evalue=2e-18

gacwCaGATCTGaady

RHTTCAGATCTGWGTC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gacwCaGATCTGaady

GATA4.DAP:M0287:AthalianaCistrome GATA4.DAP/M0287/AthalianaCistrome D 15 0.9375 0.855 0.801 NA NA

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome R 14 0.8750 0.868 0.760 NA NA

GATA11.DAP:M0284:AthalianaCistrome GATA11.DAP/M0284/AthalianaCistrome D 14 0.8235 0.886 0.729 NA NA

Total matches= 39 (36 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 97 (9.67%)
Max nb of predicted sites per peak: 7
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.37

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 28 oligos_8nt_test_vs_ctrl_m8

k-mer sig=17.70; evalue=2e-18

gmtTCaGATCTsrm

KYSAGATCTGAAKC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gmtTCaGATCTsrm

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome D 14 1.0000 0.860 0.860 NA NA

GATA12.DAP:M0285:AthalianaCistrome GATA12.DAP/M0285/AthalianaCistrome D 13 0.9286 0.876 0.814 NA NA

GATA4.DAP:M0287:AthalianaCistrome GATA4.DAP/M0287/AthalianaCistrome R 14 0.9333 0.846 0.790 NA NA

Total matches= 53 (50 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 97 (9.67%)
Max nb of predicted sites per peak: 7
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.23

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 29 oligos_8nt_test_vs_ctrl_m9

k-mer sig=17.70; evalue=2e-18

gmttCaGATCtrmrw

WYKYAGATCTGAAKC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gmttCaGATCtrmrw

GATA4.DAP:M0287:AthalianaCistrome GATA4.DAP/M0287/AthalianaCistrome R 15 1.0000 0.858 0.858 NA NA

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome D 14 0.9333 0.877 0.819 NA NA

GATA12.DAP:M0285:AthalianaCistrome GATA12.DAP/M0285/AthalianaCistrome D 13 0.8667 0.899 0.779 NA NA

Total matches= 46 (43 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 102 (10.17%)
Max nb of predicted sites per peak: 7
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.29

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 30 oligos_8nt_test_vs_ctrl_m10

k-mer sig=17.70; evalue=2e-18

gdttCaGATCtGaawc

GWTTCAGATCTGAAHC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gdttCaGATCtGaawc

GATA4.DAP:M0287:AthalianaCistrome GATA4.DAP/M0287/AthalianaCistrome D 15 0.9375 0.847 0.794 NA NA

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome D 14 0.8750 0.869 0.760 NA NA

GATA11.DAP:M0284:AthalianaCistrome GATA11.DAP/M0284/AthalianaCistrome R 14 0.8235 0.895 0.737 NA NA

Total matches= 33 (30 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 94 (9.37%)
Max nb of predicted sites per peak: 7
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.60

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 31 dyads_test_vs_ctrl_m1

k-mer sig=21.43; evalue=3.7e-22

gaktCaGATCTGartc

GAYTCAGATCTGAMTC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gaktCaGATCTGartc

GATA4.DAP:M0287:AthalianaCistrome GATA4.DAP/M0287/AthalianaCistrome D 15 0.9375 0.870 0.816 NA NA

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome R 14 0.8750 0.893 0.781 NA NA

GATA11.DAP:M0284:AthalianaCistrome GATA11.DAP/M0284/AthalianaCistrome D 14 0.8235 0.912 0.751 NA NA

Total matches= 42 (39 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 77 (7.68%)
Max nb of predicted sites per peak: 8
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.95

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 32 dyads_test_vs_ctrl_m2

k-mer sig=21.43; evalue=3.7e-22

kgwytCAGATCtaavts

SABTTAGATCTGARWCM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kgwytCAGATCtaavts

GATA14:MA1325.1:JASPAR GATA14/MA1325.1/JASPAR R 15 0.8824 0.935 0.825 NA NA

GATA4.DAP:M0287:AthalianaCistrome GATA4.DAP/M0287/AthalianaCistrome R 15 0.8824 0.862 0.760 NA NA

GATA11.DAP:M0284:AthalianaCistrome GATA11.DAP/M0284/AthalianaCistrome D 15 0.8824 0.856 0.755 NA NA

Total matches= 44 (41 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 117 (11.67%)
Max nb of predicted sites per peak: 7
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.28

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 33 dyads_test_vs_ctrl_m3

k-mer sig=4.79; evalue=1.6e-05

ggCCaCGtGGsr

YSCCACGTGGCC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ggCCaCGtGGsr

O11:MA1816.1:JASPAR O11/MA1816.1/JASPAR R 12 1.0000 0.879 0.879 NA NA

ABF4:MA1659.1:JASPAR ABF4/MA1659.1/JASPAR R 12 1.0000 0.874 0.874 NA NA

HY5:MA0551.2:JASPAR HY5/MA0551.2/JASPAR D 12 1.0000 0.857 0.857 NA NA

Total matches= 236 (233 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 112 (11.17%)
Max nb of predicted sites per peak: 6
(gene-Lalb_Chr21g0309481)
Mean nb of predicted sites per peak: 2.12

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 34 dyads_test_vs_ctrl_m4

k-mer sig=21.43; evalue=3.7e-22

ssssaatsRGcbsGsgssaCGtsg

CSACGTSSCSCSVGCYSATTSSSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssssaatsRGcbsGsgssaCGtsg

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 116 (11.57%)
Max nb of predicted sites per peak: 7
(gene-Lalb_Chr02g0144601)
Mean nb of predicted sites per peak: 1.62

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 35 dyads_test_vs_ctrl_m5

k-mer sig=21.43; evalue=3.7e-22

ssCGtsGGcssGssssrSvss

SSBSYSSSSCSSGCCSACGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssCGtsGGcssGssssrSvss

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 119 (11.86%)
Max nb of predicted sites per peak: 10
(gene-Lalb_Chr14g0370411)
Mean nb of predicted sites per peak: 2.24

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 36 dyads_test_vs_ctrl_m6

k-mer sig=21.43; evalue=3.7e-22

gscaCGRdbYgSsssgssmycGsbvss

SSBVSCGRKSSCSSSSCRVHYCGTGSC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gscaCGRdbYgSsssgssmycGsbvss

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 106 (10.57%)
Max nb of predicted sites per peak: 12
(gene-Lalb_Chr07g0194391)
Mean nb of predicted sites per peak: 2.19

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 37 dyads_test_vs_ctrl_m7

k-mer sig=21.43; evalue=3.7e-22

rsgaASaKMkSksskkGbvgg

CCBVCMMSSMSMKMTSTTCSY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rsgaASaKMkSksskkGbvgg

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 90 (8.97%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr11g0061751)
Mean nb of predicted sites per peak: 1.30

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 38 dyads_test_vs_ctrl_m8

k-mer sig=21.43; evalue=3.7e-22

msaCaGakCkGsrsgtgsamsksrsss

SSSYSMSKTSCACSYSCMGMTCTGTSK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor msaCaGakCkGsrsgtgsamsksrsss

GATA11.DAP:M0284:AthalianaCistrome GATA11.DAP/M0284/AthalianaCistrome R 15 0.5556 0.762 0.423 NA NA

Total matches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 73 (7.28%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr21g0314291)
Mean nb of predicted sites per peak: 1.25

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 39 dyads_test_vs_ctrl_m9

k-mer sig=21.43; evalue=3.7e-22

gsckCGRwyysGsssgssmhcKtsrss

SSYSAMGDKSSCSSSCSRRWYCGMGSC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gsckCGRwyysGsssgssmhcKtsrss

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 106 (10.57%)
Max nb of predicted sites per peak: 13
(gene-Lalb_Chr07g0194391)
Mean nb of predicted sites per peak: 1.97

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 40 dyads_test_vs_ctrl_m10

k-mer sig=21.43; evalue=3.7e-22

gscaCGRdyYGSsssggsacrsvss

SSBSYGTSCCSSSSCRRHYCGTGSC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gscaCGRdyYGSsssggsacrsvss

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 100 (9.97%)
Max nb of predicted sites per peak: 13
(gene-Lalb_Chr02g0142891)
Mean nb of predicted sites per peak: 2.06

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]
Discovered motifs versus transcription factor databases
Motifs versus footprintDB-plants database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: MEgreenyellow_Up3 (25/05/2025 13:32)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssssaatsRGcbsGsgssaCGtsg

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssCGtsGGcssGssssrSvss

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gscaCGRdbYgSsssgssmycGsbvss

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rsgaASaKMkSksskkGbvgg

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor msaCaGakCkGsrsgtgsamsksrsss

GATA11.DAP:M0284:AthalianaCistrome GATA11.DAP/M0284/AthalianaCistrome R 15 0.5556 0.762 0.423 NA NA

Total matches= 1

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gsckCGRwyysGsssgssmhcKtsrss

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gscaCGRdyYGSsssggsacrsvss

Total matches= 0

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

RSAT - peak-motifs result

Analysis: MEgreenyellow_Up3 (25/05/2025 13:32)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor ssssaatsRGcbsGsgssaCGtsg Total matches= 0

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor ssCGtsGGcssGssssrSvss Total matches= 0

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor gscaCGRdbYgSsssgssmycGsbvss Total matches= 0

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor rsgaASaKMkSksskkGbvgg Total matches= 0

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor msaCaGakCkGsrsgtgsamsksrsss GATA11.DAP:M0284:AthalianaCistrome GATA11.DAP/M0284/AthalianaCistrome R 15 0.5556 0.762 0.423 NA NA Total matches= 1

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor gsckCGRwyysGsssgssmhcKtsrss Total matches= 0

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor gscaCGRdyYGSsssggsacrsvss Total matches= 0

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssssaatsRGcbsGsgssaCGtsg

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssCGtsGGcssGssssrSvss

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gscaCGRdbYgSsssgssmycGsbvss

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rsgaASaKMkSksskkGbvgg

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor msaCaGakCkGsrsgtgsamsksrsss

GATA11.DAP:M0284:AthalianaCistrome GATA11.DAP/M0284/AthalianaCistrome R 15 0.5556 0.762 0.423 NA NA

Total matches= 1

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gsckCGRwyysGsssgssmhcKtsrss

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gscaCGRdyYGSsssggsacrsvss

Total matches= 0