peak-motifs MEnavajowhite2_Up1

motif discovery

oligos_6nt_test_vs_ctrl

oligos_6nt_test_vs_ctrl_m1	assembly: cacttc (sig=1.68; e-value=0.021)	RC: gaagtg
oligos_6nt_test_vs_ctrl_m2	assembly: aacggc (sig=1.04; e-value=0.091)	RC: gccgtt
oligos_6nt_test_vs_ctrl_m3	assembly: aactttac (sig=1.03; e-value=0.093)	RC: gtaaagtt
oligos_6nt_test_vs_ctrl_m4	assembly: aatagt (sig=0.49; e-value=0.32)	RC: actatt
oligos_6nt_test_vs_ctrl_m5	assembly: aaagca (sig=0.41; e-value=0.39)	RC: tgcttt
oligos_6nt_test_vs_ctrl_m6	assembly: acaaaa (sig=0.09; e-value=0.81)	RC: ttttgt
oligos_6nt_test_vs_ctrl_m7	: (sig=; e-value=1)	RC:
oligos_6nt_test_vs_ctrl_m8	: (sig=; e-value=1)	RC:
oligos_6nt_test_vs_ctrl_m9	: (sig=; e-value=1)	RC:
oligos_6nt_test_vs_ctrl_m10	: (sig=; e-value=1)	RC:

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

oligos_7nt_test_vs_ctrl

oligos_7nt_test_vs_ctrl_m1	assembly: ctctcac (sig=0.21; e-value=0.62)	RC: gtgagag
oligos_7nt_test_vs_ctrl_m2	assembly: aaatagt (sig=0.07; e-value=0.85)	RC: actattt
oligos_7nt_test_vs_ctrl_m3	assembly: taaagca (sig=0.07; e-value=0.85)	RC: tgcttta
oligos_7nt_test_vs_ctrl_m4	: (sig=; e-value=1)	RC:
oligos_7nt_test_vs_ctrl_m5	: (sig=; e-value=1)	RC:
oligos_7nt_test_vs_ctrl_m6	: (sig=; e-value=1)	RC:
oligos_7nt_test_vs_ctrl_m7	: (sig=; e-value=1)	RC:
oligos_7nt_test_vs_ctrl_m8	: (sig=; e-value=1)	RC:
oligos_7nt_test_vs_ctrl_m9	: (sig=; e-value=1)	RC:
oligos_7nt_test_vs_ctrl_m10	: (sig=; e-value=1)	RC:

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

oligos_8nt_test_vs_ctrl

oligos_8nt_test_vs_ctrl_m1	assembly: ggacccac (sig=0.18; e-value=0.66)	RC: gtgggtcc
oligos_8nt_test_vs_ctrl_m2	: (sig=; e-value=1)	RC:
oligos_8nt_test_vs_ctrl_m3	: (sig=; e-value=1)	RC:
oligos_8nt_test_vs_ctrl_m4	: (sig=; e-value=1)	RC:
oligos_8nt_test_vs_ctrl_m5	: (sig=; e-value=1)	RC:
oligos_8nt_test_vs_ctrl_m6	: (sig=; e-value=1)	RC:
oligos_8nt_test_vs_ctrl_m7	: (sig=; e-value=1)	RC:
oligos_8nt_test_vs_ctrl_m8	: (sig=; e-value=1)	RC:
oligos_8nt_test_vs_ctrl_m9	: (sig=; e-value=1)	RC:
oligos_8nt_test_vs_ctrl_m10	: (sig=; e-value=1)	RC:

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

dyads_test_vs_ctrl

dyads_test_vs_ctrl_m1	assembly: actnnnnnnnnnnnnnnnnnnnact (sig=0.89; e-value=0.13)	RC: agtnnnnnnnnnnnnnnnnnnnagt
dyads_test_vs_ctrl_m2	assembly: aagnnnnnnnnnnnnnnnnnnnnttc (sig=0.81; e-value=0.15)	RC: gaannnnnnnnnnnnnnnnnnnnctt
dyads_test_vs_ctrl_m3	assembly: actnnnnnnnnnnnnnnnnnnnngaa (sig=0.81; e-value=0.15)	RC: ttcnnnnnnnnnnnnnnnnnnnnagt
dyads_test_vs_ctrl_m4	assembly: acannnnnnnnnnnnnnnnnntgt (sig=0.81; e-value=0.15)	RC: acannnnnnnnnnnnnnnnnntgt
dyads_test_vs_ctrl_m5	: (sig=; e-value=1)	RC:
dyads_test_vs_ctrl_m6	: (sig=; e-value=1)	RC:
dyads_test_vs_ctrl_m7	: (sig=; e-value=1)	RC:
dyads_test_vs_ctrl_m8	: (sig=; e-value=1)	RC:
dyads_test_vs_ctrl_m9	: (sig=; e-value=1)	RC:
dyads_test_vs_ctrl_m10	: (sig=; e-value=1)	RC:

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

Motif discovery

Motif 1 oligos_6nt_test_vs_ctrl_m1

k-mer sig=1.68; evalue=0.021

syCaCTTCvc

GBGAAGTGRS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor syCaCTTCvc

LEC1-A:UN0423.1:JASPAR LEC1-A/UN0423.1/JASPAR R 10 1.0000 0.740 0.740 NA NA

AT2G31460:UN0390.1:JASPAR AT2G31460/UN0390.1/JASPAR R 10 0.8333 0.714 0.595 NA NA

AT2G31460.DAP:M0726:AthalianaCistrome AT2G31460.DAP/M0726/AthalianaCistrome R 10 0.8333 0.714 0.595 NA NA

Total matches= 27 (24 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 120 (42.40%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr07g0182181)
Mean nb of predicted sites per peak: 1.42

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_test_vs_ctrl_m2

k-mer sig=1.04; evalue=0.091

smAACGGCgm

KCGCCGTTKS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor smAACGGCgm

PC-MYB1:MA2352.1:JASPAR PC-MYB1/MA2352.1/JASPAR R 9 0.9000 0.889 0.800 NA NA

MYB56:MA1174.2:JASPAR MYB56/MA1174.2/JASPAR D 10 1.0000 0.788 0.788 NA NA

MYB3R3:MA2343.1:JASPAR MYB3R3/MA2343.1/JASPAR R 8 0.8000 0.922 0.737 NA NA

Total matches= 88 (85 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 62 (21.91%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr20g0108621)
Mean nb of predicted sites per peak: 1.15

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_test_vs_ctrl_m3

k-mer sig=1.03; evalue=0.093

ymaACTTtaChy

RDGTAAAGTTKR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ymaACTTtaChy

AT3G52440:MA1276.1:JASPAR AT3G52440/MA1276.1/JASPAR R 11 0.9167 0.737 0.675 NA NA

AT1G47655:MA1275.1:JASPAR AT1G47655/MA1275.1/JASPAR R 11 0.9167 0.718 0.658 NA NA

AT5G63260.DAP:M0340:AthalianaCistrome AT5G63260.DAP/M0340/AthalianaCistrome R 11 0.9167 0.712 0.653 NA NA

Total matches= 56 (53 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 14 (4.95%)
Max nb of predicted sites per peak: 1
(gene-Lalb_Chr24g0397271)
Mean nb of predicted sites per peak: 1.00

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_test_vs_ctrl_m4

k-mer sig=0.49; evalue=0.32

vrAATAGTgr

YCACTATTYB

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor vrAATAGTgr

ALOG:EEAD0170:EEADannot ALOG/EEAD0170/EEADannot R 10 0.9091 0.775 0.704 NA NA

HAT5.DAP:M0442:AthalianaCistrome HAT5.DAP/M0442/AthalianaCistrome D 10 0.9091 0.720 0.655 NA NA

ATHB13:MA1212.1:JASPAR ATHB13/MA1212.1/JASPAR D 10 0.9091 0.716 0.651 NA NA

Total matches= 38 (35 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 136 (48.06%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr25g0286541)
Mean nb of predicted sites per peak: 1.54

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_test_vs_ctrl_m5

k-mer sig=0.41; evalue=0.39

rkAAAGCAmr

YKTGCTTTMY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rkAAAGCAmr

NAC007:UN0370.1:JASPAR NAC007/UN0370.1/JASPAR D 10 0.9091 0.806 0.733 NA NA

SMB:UN0380.1:JASPAR SMB/UN0380.1/JASPAR D 10 0.9091 0.800 0.727 NA NA

NAC101:UN0377.1:JASPAR NAC101/UN0377.1/JASPAR D 10 0.9091 0.799 0.726 NA NA

Total matches= 87 (84 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 133 (47.00%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr14g0362861)
Mean nb of predicted sites per peak: 1.45

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 oligos_6nt_test_vs_ctrl_m6

k-mer sig=0.09; evalue=0.81

rmACAAAAsb

VSTTTTGTKY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rmACAAAAsb

ChFLMrsat:EEAD0162:EEADannot ChFLMrsat/EEAD0162/EEADannot D 10 0.8333 0.875 0.729 NA NA

TRANSCRIPTION:1qn9_B:3D-footprint TRANSCRIPTION/1qn9_B/3D-footprint D 8 0.8000 0.907 0.725 NA NA

ATGRP2B:M0583_1.02:CISBP ATGRP2B/M0583_1.02/CISBP R 8 0.8000 0.754 0.603 NA NA

Total matches= 67 (64 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 27 (9.54%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr24g0397271)
Mean nb of predicted sites per peak: 1.11

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 oligos_7nt_test_vs_ctrl_m1

k-mer sig=0.21; evalue=0.62

yyCTCTCaCyy

RRGTGAGAGRR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yyCTCTCaCyy

CURE3UTR1:EEAD0076:EEADannot CURE3UTR1/EEAD0076/EEADannot D 10 0.9091 0.787 0.715 NA NA

STZ:MA1372.1:JASPAR STZ/MA1372.1/JASPAR D 11 1.0000 0.700 0.700 NA NA

ZAT10:MA1372.2:JASPAR ZAT10/MA1372.2/JASPAR D 10 0.9091 0.703 0.639 NA NA

Total matches= 16 (13 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 79 (27.92%)
Max nb of predicted sites per peak: 7
(gene-Lalb_Chr24g0398471)
Mean nb of predicted sites per peak: 1.47

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_7nt_test_vs_ctrl_m2

k-mer sig=0.07; evalue=0.85

rraaATAGTrk

MYACTATTTYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rraaATAGTrk

CDF5:UN0360.1:JASPAR CDF5/UN0360.1/JASPAR D 10 0.9091 0.727 0.661 NA NA

DOF2.2:MA1272.2:JASPAR DOF2.2/MA1272.2/JASPAR D 10 0.9091 0.727 0.661 NA NA

ALOG:EEAD0170:EEADannot ALOG/EEAD0170/EEADannot R 10 0.8333 0.789 0.657 NA NA

Total matches= 54 (51 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 103 (36.40%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr07g0178291)
Mean nb of predicted sites per peak: 1.27

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 oligos_7nt_test_vs_ctrl_m3

k-mer sig=0.07; evalue=0.85

rvtaaaGCata

TATGCTTTABY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rvtaaaGCata

e_gw1.170.52.1:M0659_1.02:CISBP e_gw1.170.52.1/M0659_1.02/CISBP D 10 0.9091 0.740 0.672 NA NA

PHYPADRAFT_140773:MA0987.1:JASPAR PHYPADRAFT_140773/MA0987.1/JASPAR D 10 0.9091 0.740 0.672 NA NA

AT1G64620:M0647_1.02:CISBP AT1G64620/M0647_1.02/CISBP D 10 0.9091 0.739 0.672 NA NA

Total matches= 60 (57 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 66 (23.32%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr11g0069781)
Mean nb of predicted sites per peak: 1.14

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_8nt_test_vs_ctrl_m1

k-mer sig=0.18; evalue=0.66

ygGGaCCCaCsc

GSGTGGGTCCCR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ygGGaCCCaCsc

At1g72010.ampDAP:M0748:AthalianaCistrome At1g72010.ampDAP/M0748/AthalianaCistrome R 12 0.9231 0.909 0.839 NA NA

At1g72010:MA1288.1:JASPAR At1g72010/MA1288.1/JASPAR R 12 0.9231 0.899 0.830 NA NA

At1g69690.ampDAP:M0756:AthalianaCistrome At1g69690.ampDAP/M0756/AthalianaCistrome R 12 0.9231 0.897 0.828 NA NA

Total matches= 75 (72 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 69 (24.38%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr14g0372811)
Mean nb of predicted sites per peak: 1.32

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 dyads_test_vs_ctrl_m1

k-mer sig=0.89; evalue=0.13

araCtvhvkksGtwtatwkawryvaCtyy

RRAGTBRYWTMWATAWACSMMBDBAGTYT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor araCtvhvkksGtwtatwkawryvaCtyy

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 46 (16.25%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr21g0305791)
Mean nb of predicted sites per peak: 1.07

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 dyads_test_vs_ctrl_m2

k-mer sig=0.81; evalue=0.15

msaaGmvskksCvwtwbwKwmkhskttCtt

AAGAAMSDMKWMWVWAWBGSMMSBKCTTSK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor msaaGmvskksCvwtwbwKwmkhskttCtt

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 29 (10.25%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr23g0269511)
Mean nb of predicted sites per peak: 1.17

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 dyads_test_vs_ctrl_m3

k-mer sig=0.81; evalue=0.15

wkaCtsmvKbsGtwtatwKaksmrwGaata

TATTCWYKSMTMWATAWACSVMBKSAGTMW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wkaCtsmvKbsGtwtatwKaksmrwGaata

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 32 (11.31%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr09g0325831)
Mean nb of predicted sites per peak: 1.06

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 dyads_test_vs_ctrl_m4

k-mer sig=0.81; evalue=0.15

ryaCashgSyKsatwtaKwtkggtGtrd

HYACACCMAWMTAWATSMRSCDSTGTRY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ryaCashgSyKsatwtaKwtkggtGtrd

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 35 (12.37%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr07g0194281)
Mean nb of predicted sites per peak: 1.09

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]
Discovered motifs versus transcription factor databases
Motifs versus footprintDB-plants database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: MEnavajowhite2_Up1_W2 (25/05/2025 14:28)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor araCtvhvkksGtwtatwkawryvaCtyy

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor msaaGmvskksCvwtwbwKwmkhskttCtt

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wkaCtsmvKbsGtwtatwKaksmrwGaata

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ryaCashgSyKsatwtaKwtkggtGtrd

Total matches= 0

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

RSAT - peak-motifs result

Analysis: MEnavajowhite2_Up1_W2 (25/05/2025 14:28)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor araCtvhvkksGtwtatwkawryvaCtyy Total matches= 0

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor msaaGmvskksCvwtwbwKwmkhskttCtt Total matches= 0

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor wkaCtsmvKbsGtwtatwKaksmrwGaata Total matches= 0

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor ryaCashgSyKsatwtaKwtkggtGtrd Total matches= 0

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor araCtvhvkksGtwtatwkawryvaCtyy

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor msaaGmvskksCvwtwbwKwmkhskttCtt

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wkaCtsmvKbsGtwtatwKaksmrwGaata

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ryaCashgSyKsatwtaKwtkggtGtrd

Total matches= 0