peak-motifs MEnavajowhite2_Up1

motif discovery

oligos_6nt_test_vs_ctrl

oligos_6nt_test_vs_ctrl_m1	assembly: aactttac (sig=1.35; e-value=0.045)	RC: gtaaagtt
oligos_6nt_test_vs_ctrl_m2	assembly: cacttc (sig=1.16; e-value=0.069)	RC: gaagtg
oligos_6nt_test_vs_ctrl_m3	assembly: ggagta (sig=0.79; e-value=0.16)	RC: tactcc
oligos_6nt_test_vs_ctrl_m4	assembly: aacggc (sig=0.47; e-value=0.34)	RC: gccgtt
oligos_6nt_test_vs_ctrl_m5	assembly: gtaaagtg (sig=1.35; e-value=0.045)	RC: cactttac
oligos_6nt_test_vs_ctrl_m6	assembly: acagta (sig=0.23; e-value=0.59)	RC: tactgt
oligos_6nt_test_vs_ctrl_m7	: (sig=; e-value=1)	RC:
oligos_6nt_test_vs_ctrl_m8	: (sig=; e-value=1)	RC:
oligos_6nt_test_vs_ctrl_m9	: (sig=; e-value=1)	RC:
oligos_6nt_test_vs_ctrl_m10	: (sig=; e-value=1)	RC:

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

oligos_7nt_test_vs_ctrl

oligos_7nt_test_vs_ctrl_m1	assembly: tactcca (sig=1.10; e-value=0.079)	RC: tggagta
oligos_7nt_test_vs_ctrl_m2	: (sig=; e-value=1)	RC:
oligos_7nt_test_vs_ctrl_m3	: (sig=; e-value=1)	RC:
oligos_7nt_test_vs_ctrl_m4	: (sig=; e-value=1)	RC:
oligos_7nt_test_vs_ctrl_m5	: (sig=; e-value=1)	RC:
oligos_7nt_test_vs_ctrl_m6	: (sig=; e-value=1)	RC:
oligos_7nt_test_vs_ctrl_m7	: (sig=; e-value=1)	RC:
oligos_7nt_test_vs_ctrl_m8	: (sig=; e-value=1)	RC:
oligos_7nt_test_vs_ctrl_m9	: (sig=; e-value=1)	RC:
oligos_7nt_test_vs_ctrl_m10	: (sig=; e-value=1)	RC:

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

oligos_8nt_test_vs_ctrl

oligos_8nt_test_vs_ctrl_m1	assembly: ggacccac (sig=0.50; e-value=0.32)	RC: gtgggtcc
oligos_8nt_test_vs_ctrl_m2	assembly: actccaca (sig=0.16; e-value=0.69)	RC: tgtggagt
oligos_8nt_test_vs_ctrl_m3	: (sig=; e-value=1)	RC:
oligos_8nt_test_vs_ctrl_m4	: (sig=; e-value=1)	RC:
oligos_8nt_test_vs_ctrl_m5	: (sig=; e-value=1)	RC:
oligos_8nt_test_vs_ctrl_m6	: (sig=; e-value=1)	RC:
oligos_8nt_test_vs_ctrl_m7	: (sig=; e-value=1)	RC:
oligos_8nt_test_vs_ctrl_m8	: (sig=; e-value=1)	RC:
oligos_8nt_test_vs_ctrl_m9	: (sig=; e-value=1)	RC:
oligos_8nt_test_vs_ctrl_m10	: (sig=; e-value=1)	RC:

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

dyads_test_vs_ctrl

dyads_test_vs_ctrl_m1	assembly: cacnnnaca (sig=1.20; e-value=0.063)	RC: tgtnnngtg
dyads_test_vs_ctrl_m2	assembly: ctcnctc (sig=0.99; e-value=0.1)	RC: gagngag
dyads_test_vs_ctrl_m3	assembly: acannnnnnnnnnnnnnnnnntgt (sig=1.20; e-value=0.063)	RC: acannnnnnnnnnnnnnnnnntgt
dyads_test_vs_ctrl_m4	assembly: actnnnnnnnnnnnnnnnnnnnact (sig=1.20; e-value=0.063)	RC: agtnnnnnnnnnnnnnnnnnnnagt
dyads_test_vs_ctrl_m5	assembly: attnnnnnnnnnnnnnnnnnnaca (sig=1.20; e-value=0.063)	RC: tgtnnnnnnnnnnnnnnnnnnaat
dyads_test_vs_ctrl_m6	assembly: actnnnnnnnnnnnnnnnnntcc (sig=1.20; e-value=0.063)	RC: ggannnnnnnnnnnnnnnnnagt
dyads_test_vs_ctrl_m7	: (sig=; e-value=1)	RC:
dyads_test_vs_ctrl_m8	: (sig=; e-value=1)	RC:
dyads_test_vs_ctrl_m9	: (sig=; e-value=1)	RC:
dyads_test_vs_ctrl_m10	: (sig=; e-value=1)	RC:

[ discovered words: text ]
[ assembly: text sig matrices ]
[ matrices: tab format transfac format ]

Motif discovery

Motif 1 oligos_6nt_test_vs_ctrl_m1

k-mer sig=1.35; evalue=0.045

hmaACTTtaChy

RDGTAAAGTTKD

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor hmaACTTtaChy

AT3G52440:MA1276.1:JASPAR AT3G52440/MA1276.1/JASPAR R 11 0.9167 0.738 0.676 NA NA

AT1G47655:MA1275.1:JASPAR AT1G47655/MA1275.1/JASPAR R 11 0.9167 0.719 0.659 NA NA

AT5G63260.DAP:M0340:AthalianaCistrome AT5G63260.DAP/M0340/AthalianaCistrome R 11 0.9167 0.713 0.653 NA NA

Total matches= 56 (53 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 22 (4.95%)
Max nb of predicted sites per peak: 1
(gene-Lalb_Chr25g0284981)
Mean nb of predicted sites per peak: 1.00

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_test_vs_ctrl_m2

k-mer sig=1.16; evalue=0.069

syCaCTTCvc

GBGAAGTGRS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor syCaCTTCvc

LEC1-A:UN0423.1:JASPAR LEC1-A/UN0423.1/JASPAR R 10 1.0000 0.736 0.736 NA NA

AT2G31460:UN0390.1:JASPAR AT2G31460/UN0390.1/JASPAR R 10 0.8333 0.714 0.595 NA NA

AT2G31460.DAP:M0726:AthalianaCistrome AT2G31460.DAP/M0726/AthalianaCistrome R 10 0.8333 0.714 0.595 NA NA

Total matches= 25 (22 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 203 (45.72%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr07g0182181)
Mean nb of predicted sites per peak: 1.37

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_test_vs_ctrl_m3

k-mer sig=0.79; evalue=0.16

rcGGAGtAgv

BCTACTCCGY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rcGGAGtAgv

At3g60580.DAP:M0307:AthalianaCistrome At3g60580.DAP/M0307/AthalianaCistrome D 8 0.8000 0.732 0.585 NA NA

ZAT9:UN0417.1:JASPAR ZAT9/UN0417.1/JASPAR R 8 0.8000 0.731 0.585 NA NA

AT5G04390:M0375_1.02:CISBP AT5G04390/M0375_1.02/CISBP D 7 0.7000 0.737 0.516 NA NA

Total matches= 8 (5 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 132 (29.73%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr10g0099511)
Mean nb of predicted sites per peak: 1.20

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_test_vs_ctrl_m4

k-mer sig=0.47; evalue=0.34

smAaCGGCga

TCGCCGTTKS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor smAaCGGCga

PC-MYB1:MA2352.1:JASPAR PC-MYB1/MA2352.1/JASPAR R 9 0.9000 0.883 0.795 NA NA

MYB56:MA1174.2:JASPAR MYB56/MA1174.2/JASPAR D 10 1.0000 0.780 0.780 NA NA

MYB3R3:MA2343.1:JASPAR MYB3R3/MA2343.1/JASPAR R 8 0.8000 0.919 0.736 NA NA

Total matches= 85 (82 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 78 (17.57%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr09g0330761)
Mean nb of predicted sites per peak: 1.13

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_test_vs_ctrl_m5

k-mer sig=1.35; evalue=0.045

rdGtaAAGTGdr

YHCACTTTACHY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rdGtaAAGTGdr

CDF3:MA0974.2:JASPAR CDF3/MA0974.2/JASPAR D 12 1.0000 0.782 0.782 NA NA

AT1G47655:MA1275.1:JASPAR AT1G47655/MA1275.1/JASPAR D 11 0.9167 0.819 0.751 NA NA

AT3G52440:MA1276.1:JASPAR AT3G52440/MA1276.1/JASPAR D 11 0.9167 0.770 0.706 NA NA

Total matches= 63 (60 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 121 (27.25%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr25g0288071)
Mean nb of predicted sites per peak: 1.15

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 oligos_6nt_test_vs_ctrl_m6

k-mer sig=0.23; evalue=0.59

ahACaGTAvh

DBTACTGTDT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ahACaGTAvh

ALOG:EEAD0170:EEADannot ALOG/EEAD0170/EEADannot R 10 0.9091 0.877 0.798 NA NA

AtMYB104_I:AtMYB104_I:AthaMYB AtMYB104_I/AtMYB104_I/AthaMYB R 8 0.8000 0.850 0.680 NA NA

MYB52:MA1171.1:JASPAR MYB52/MA1171.1/JASPAR R 10 0.9091 0.709 0.645 NA NA

Total matches= 29 (26 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 115 (25.90%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr06g0172111)
Mean nb of predicted sites per peak: 1.23

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 oligos_7nt_test_vs_ctrl_m1

k-mer sig=1.10; evalue=0.079

wmtaCtCCAyh

DRTGGAGTAKW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wmtaCtCCAyh

At3g60580.DAP:M0307:AthalianaCistrome At3g60580.DAP/M0307/AthalianaCistrome R 8 0.7273 0.725 0.527 NA NA

ZAT9:UN0417.1:JASPAR ZAT9/UN0417.1/JASPAR D 8 0.7273 0.725 0.527 NA NA

AT5G04390:M0375_1.02:CISBP AT5G04390/M0375_1.02/CISBP R 7 0.6364 0.746 0.475 NA NA

Total matches= 7 (4 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 72 (16.22%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr10g0099511)
Mean nb of predicted sites per peak: 1.14

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_8nt_test_vs_ctrl_m1

k-mer sig=0.50; evalue=0.32

tgGGaCCCaCsc

GSGTGGGTCCCA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor tgGGaCCCaCsc

At1g72010.ampDAP:M0748:AthalianaCistrome At1g72010.ampDAP/M0748/AthalianaCistrome R 12 0.9231 0.910 0.840 NA NA

At1g72010:MA1288.1:JASPAR At1g72010/MA1288.1/JASPAR R 12 0.9231 0.899 0.830 NA NA

At1g69690.ampDAP:M0756:AthalianaCistrome At1g69690.ampDAP/M0756/AthalianaCistrome R 12 0.9231 0.898 0.829 NA NA

Total matches= 76 (73 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 101 (22.75%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr16g0379181)
Mean nb of predicted sites per peak: 1.33

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 oligos_8nt_test_vs_ctrl_m2

k-mer sig=0.16; evalue=0.69

mcACtCCACAmt

AKTGTGGAGTGK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mcACtCCACAmt

NF_CO:EEAD0014:EEADannot NF_CO/EEAD0014/EEADannot D 8 0.6667 0.744 0.496 NA NA

StCONSTANSlike1:EEAD0013:EEADannot StCONSTANSlike1/EEAD0013/EEADannot R 7 0.5833 0.803 0.468 NA NA

U2AF35B.DAP:M0347:AthalianaCistrome U2AF35B.DAP/M0347/AthalianaCistrome R 7 0.5833 0.787 0.459 NA NA

Total matches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 65 (14.64%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr19g0134631)
Mean nb of predicted sites per peak: 1.12

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 dyads_test_vs_ctrl_m1

k-mer sig=1.20; evalue=0.063

ymCACttYaCamt

AKTGTRAAGTGKR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ymCACttYaCamt

O2DREME:EEAD0018:EEADannot O2DREME/EEAD0018/EEADannot D 8 0.6154 0.752 0.463 NA NA

AZF2:M0372_1.02:CISBP AZF2/M0372_1.02/CISBP R 7 0.5385 0.831 0.448 NA NA

RHL41:M0377_1.02:CISBP RHL41/M0377_1.02/CISBP R 7 0.5385 0.829 0.447 NA NA

Total matches= 9 (6 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 101 (22.75%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr12g0197721)
Mean nb of predicted sites per peak: 1.13

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 dyads_test_vs_ctrl_m2

k-mer sig=0.99; evalue=0.1

ytCtCkCtCby

RVGAGMGAGAR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ytCtCkCtCby

CURE3UTR1:EEAD0076:EEADannot CURE3UTR1/EEAD0076/EEADannot D 10 0.9091 0.890 0.809 NA NA

BPC1.ampDAP:M0149:AthalianaCistrome BPC1.ampDAP/M0149/AthalianaCistrome D 11 0.7333 0.862 0.632 NA NA

AT3G46070:MA1381.1:JASPAR AT3G46070/MA1381.1/JASPAR D 11 0.7333 0.801 0.587 NA NA

Total matches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 187 (42.12%)
Max nb of predicted sites per peak: 6
(gene-Lalb_Chr20g0123591)
Mean nb of predicted sites per peak: 1.55

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 dyads_test_vs_ctrl_m3

k-mer sig=1.20; evalue=0.063

vsaCasgsvvcvkGrsvsrCamktGtkk

MMACAMKTGYSBSYCMBGBBSCSTGTSB

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor vsaCasgsvvcvkGrsvsrCamktGtkk

BIM2.ampDAP:M0156:AthalianaCistrome BIM2.ampDAP/M0156/AthalianaCistrome D 19 0.6786 0.730 0.495 NA NA

BIM2.DAP:M0157:AthalianaCistrome BIM2.DAP/M0157/AthalianaCistrome R 15 0.5357 0.773 0.414 NA NA

CUC3.ampDAP:M0700:AthalianaCistrome CUC3.ampDAP/M0700/AthalianaCistrome R 16 0.5714 0.718 0.410 NA NA

Total matches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 63 (14.19%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr23g0267481)
Mean nb of predicted sites per peak: 1.46

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 dyads_test_vs_ctrl_m4

k-mer sig=1.20; evalue=0.063

ssaCtsdsksrdsasssscsmmysaCtyy

RRAGTSRKKSGSSSSTSHYSMSHSAGTSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssaCtsdsksrdsasssscsmmysaCtyy

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 51 (11.49%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr03g0033161)
Mean nb of predicted sites per peak: 1.27

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 dyads_test_vs_ctrl_m5

k-mer sig=1.20; evalue=0.063

gsaktSksKsgsSasssgssmmyrcass

SSTGYRKKSSCSSSTSSCSMSMSAMTSC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gsaktSksKsgsSasssgssmmyrcass

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 71 (15.99%)
Max nb of predicted sites per peak: 9
(gene-Lalb_Chr01g0013011)
Mean nb of predicted sites per peak: 1.61

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 dyads_test_vs_ctrl_m6

k-mer sig=1.20; evalue=0.063

ysaCtswsksrrsavskgcsaCtscss

SSGSAGTSGCMSBTSYYSMSWSAGTSR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ysaCtswsksrrsavskgcsaCtscss

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 53 (11.94%)
Max nb of predicted sites per peak: 16
(gene-Lalb_Chr01g0013011)
Mean nb of predicted sites per peak: 1.47

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]
Discovered motifs versus transcription factor databases
Motifs versus footprintDB-plants database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: MEnavajowhite2_Up1_W1 (26/05/2025 03:45)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssaCtsdsksrdsasssscsmmysaCtyy

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gsaktSksKsgsSasssgssmmyrcass

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ysaCtswsksrrsavskgcsaCtscss

Total matches= 0

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

RSAT - peak-motifs result

Analysis: MEnavajowhite2_Up1_W1 (26/05/2025 03:45)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor ssaCtsdsksrdsasssscsmmysaCtyy Total matches= 0

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor gsaktSksKsgsSasssgssmmyrcass Total matches= 0

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor ysaCtswsksrrsavskgcsaCtscss Total matches= 0

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssaCtsdsksrdsasssscsmmysaCtyy

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gsaktSksKsgsSasssgssmmyrcass

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ysaCtswsksrrsavskgcsaCtscss

Total matches= 0