RSAT - peak-motifs result

Analysis: MEnavajowhite2_Up3_W1 (26/05/2025 03:15)

peak-motifs  -v 1 -title MEnavajowhite2_Up3_W1 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.030021_2025-05-26.030021_yYdQnU/peak-motifspeak_seq -ctrl $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.030021_2025-05-26.030021_yYdQnU/peak-motifscontrol_seq -markov auto -disco oligos,dyads,positions -nmotifs 10 -minol 6 -maxol 8 -no_merge_lengths -2str -origin center -offset 200 -motif_db footprintDB-plants tf $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.030021_2025-05-26.030021_yYdQnU

motif discovery
oligos_6nt_test_vs_ctrl	oligos_6nt_test_vs_ctrl_m1 assembly: aaagtg (sig=2.65; e-value=0.0022) RC: cacttt oligos_6nt_test_vs_ctrl_m2 assembly: gcggga (sig=1.44; e-value=0.036) RC: tcccgc oligos_6nt_test_vs_ctrl_m3 assembly: acagta (sig=1.41; e-value=0.039) RC: tactgt oligos_6nt_test_vs_ctrl_m4 assembly: agaggg (sig=1.15; e-value=0.071) RC: ccctct oligos_6nt_test_vs_ctrl_m5 assembly: taacggt (sig=1.12; e-value=0.076) RC: accgtta oligos_6nt_test_vs_ctrl_m6 assembly: taacggc (sig=0.92; e-value=0.12) RC: gccgtta oligos_6nt_test_vs_ctrl_m7 assembly: agtgag (sig=0.42; e-value=0.38) RC: ctcact oligos_6nt_test_vs_ctrl_m8 assembly: ctttac (sig=0.33; e-value=0.47) RC: gtaaag oligos_6nt_test_vs_ctrl_m9 assembly: cacttc (sig=0.28; e-value=0.52) RC: gaagtg oligos_6nt_test_vs_ctrl_m10 assembly: aaacggt (sig=1.12; e-value=0.076) RC: accgttt	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
oligos_7nt_test_vs_ctrl	oligos_7nt_test_vs_ctrl_m1 assembly: aacggtc (sig=1.23; e-value=0.059) RC: gaccgtt oligos_7nt_test_vs_ctrl_m2 assembly: ggaccca (sig=0.90; e-value=0.13) RC: tgggtcc oligos_7nt_test_vs_ctrl_m3 assembly: agtaaag (sig=0.87; e-value=0.13) RC: ctttact oligos_7nt_test_vs_ctrl_m4 assembly: agaggga (sig=0.44; e-value=0.36) RC: tccctct oligos_7nt_test_vs_ctrl_m5 assembly: ggcggga (sig=0.00; e-value=1) RC: tcccgcc oligos_7nt_test_vs_ctrl_m6 : (sig=; e-value=1) RC: oligos_7nt_test_vs_ctrl_m7 : (sig=; e-value=1) RC: oligos_7nt_test_vs_ctrl_m8 : (sig=; e-value=1) RC: oligos_7nt_test_vs_ctrl_m9 : (sig=; e-value=1) RC: oligos_7nt_test_vs_ctrl_m10 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
oligos_8nt_test_vs_ctrl	oligos_8nt_test_vs_ctrl_m1 assembly: ggacccac (sig=1.59; e-value=0.026) RC: gtgggtcc oligos_8nt_test_vs_ctrl_m2 assembly: acacagta (sig=0.12; e-value=0.76) RC: tactgtgt oligos_8nt_test_vs_ctrl_m3 : (sig=; e-value=1) RC: oligos_8nt_test_vs_ctrl_m4 : (sig=; e-value=1) RC: oligos_8nt_test_vs_ctrl_m5 : (sig=; e-value=1) RC: oligos_8nt_test_vs_ctrl_m6 : (sig=; e-value=1) RC: oligos_8nt_test_vs_ctrl_m7 : (sig=; e-value=1) RC: oligos_8nt_test_vs_ctrl_m8 : (sig=; e-value=1) RC: oligos_8nt_test_vs_ctrl_m9 : (sig=; e-value=1) RC: oligos_8nt_test_vs_ctrl_m10 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]
dyads_test_vs_ctrl	dyads_test_vs_ctrl_m1 assembly: cagnnnnnngta (sig=1.95; e-value=0.011) RC: tacnnnnnnctg dyads_test_vs_ctrl_m2 assembly: cacnnnaca (sig=1.73; e-value=0.019) RC: tgtnnngtg dyads_test_vs_ctrl_m3 assembly: aaannnnnnnnnnnnnnnnnncac (sig=1.95; e-value=0.011) RC: gtgnnnnnnnnnnnnnnnnnnttt dyads_test_vs_ctrl_m4 assembly: aggnnnnnnnnnnnnnnnnnnaga (sig=1.95; e-value=0.011) RC: tctnnnnnnnnnnnnnnnnnncct dyads_test_vs_ctrl_m5 : (sig=; e-value=1) RC: dyads_test_vs_ctrl_m6 : (sig=; e-value=1) RC: dyads_test_vs_ctrl_m7 : (sig=; e-value=1) RC: dyads_test_vs_ctrl_m8 : (sig=; e-value=1) RC: dyads_test_vs_ctrl_m9 : (sig=; e-value=1) RC: dyads_test_vs_ctrl_m10 : (sig=; e-value=1) RC:	[ discovered words: text ] [ assembly: text sig matrices ] [ matrices: tab format transfac format ]

Motif discovery
Motif 1   oligos_6nt_test_vs_ctrl_m1	k-mer sig=2.65; evalue=0.0022 rrAAAGTGrr YYCACTTTYY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rrAAAGTGrr cdf3:M0651_1.02:CISBP cdf3/M0651_1.02/CISBP D 9 0.9000 0.895 0.806 NA NA CDF3:MA0974.1:JASPAR CDF3/MA0974.1/JASPAR D 9 0.9000 0.895 0.805 NA NA C3H67:UN0851.1:JASPAR C3H67/UN0851.1/JASPAR D 10 1.0000 0.799 0.799 NA NA Total matches= 106 (103 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 144 (32.43%) Max nb of predicted sites per peak: 4  (gene-Lalb_Chr21g0306681) Mean nb of predicted sites per peak: 1.37	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 2   oligos_6nt_test_vs_ctrl_m2	k-mer sig=1.44; evalue=0.036 rrGCGGGArv BYTCCCGCYY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rrGCGGGArv E2Fa:E2Fa:Athamap E2Fa/E2Fa/Athamap R 8 0.8000 0.920 0.736 NA NA E2Fb:E2Fb:Athamap E2Fb/E2Fb/Athamap R 8 0.8000 0.917 0.734 NA NA E2Fc:E2Fc:Athamap E2Fc/E2Fc/Athamap R 9 0.7500 0.866 0.649 NA NA Total matches= 12 (9 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 80 (18.02%) Max nb of predicted sites per peak: 3  (gene-Lalb_Chr20g0123591) Mean nb of predicted sites per peak: 1.18	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 3   oligos_6nt_test_vs_ctrl_m3	k-mer sig=1.41; evalue=0.039 ayACaGTArw WYTACTGTRT	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ayACaGTArw ALOG:EEAD0170:EEADannot ALOG/EEAD0170/EEADannot R 10 0.9091 0.870 0.791 NA NA AtMYB104_I:AtMYB104_I:AthaMYB AtMYB104_I/AtMYB104_I/AthaMYB R 8 0.8000 0.842 0.673 NA NA At5g28300:At5g28300:ArabidopsisPBM At5g28300/At5g28300/ArabidopsisPBM D 9 0.8182 0.748 0.612 NA NA Total matches= 26 (23 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 79 (17.79%) Max nb of predicted sites per peak: 2  (gene-Lalb_Chr25g0285141) Mean nb of predicted sites per peak: 1.11	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 4   oligos_6nt_test_vs_ctrl_m4	k-mer sig=1.15; evalue=0.071 rdaGaGGGrr YYCCCTCTHY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rdaGaGGGrr CURE3UTR1:EEAD0076:EEADannot CURE3UTR1/EEAD0076/EEADannot R 9 0.8182 0.712 0.583 NA NA Lysine-specific:6jnl_A:3D-footprint Lysine-specific/6jnl_A/3D-footprint D 6 0.6000 0.846 0.508 NA NA Lysine-specific:6a57_A:3D-footprint Lysine-specific/6a57_A/3D-footprint D 6 0.6000 0.793 0.476 NA NA Total matches= 4 (1 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 103 (23.20%) Max nb of predicted sites per peak: 3  (gene-Lalb_Chr25g0285141) Mean nb of predicted sites per peak: 1.17	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 5   oligos_6nt_test_vs_ctrl_m5	k-mer sig=1.12; evalue=0.076 kgtAACGGTrr YYACCGTTACM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor kgtAACGGTrr MYB44.ampDAP:M0554:AthalianaCistrome MYB44.ampDAP/M0554/AthalianaCistrome D 11 1.0000 0.870 0.870 NA NA MYB119:MA1176.1:JASPAR MYB119/MA1176.1/JASPAR R 11 1.0000 0.845 0.845 NA NA MYB56:MA1174.2:JASPAR MYB56/MA1174.2/JASPAR D 10 0.9091 0.911 0.828 NA NA Total matches= 96 (93 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 43 (9.68%) Max nb of predicted sites per peak: 2  (gene-Lalb_Chr22g0351091) Mean nb of predicted sites per peak: 1.07	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 6   oligos_6nt_test_vs_ctrl_m6	k-mer sig=0.92; evalue=0.12 sstAACGGCga TCGCCGTTASS	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor sstAACGGCga MYB119:MA1176.1:JASPAR MYB119/MA1176.1/JASPAR R 11 1.0000 0.805 0.805 NA NA MYB44.ampDAP:M0554:AthalianaCistrome MYB44.ampDAP/M0554/AthalianaCistrome D 11 1.0000 0.768 0.768 NA NA MYB56:MA1174.2:JASPAR MYB56/MA1174.2/JASPAR D 10 0.9091 0.829 0.754 NA NA Total matches= 93 (90 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 63 (14.19%) Max nb of predicted sites per peak: 3  (gene-Lalb_Chr01g0010821) Mean nb of predicted sites per peak: 1.08	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 7   oligos_6nt_test_vs_ctrl_m7	k-mer sig=0.42; evalue=0.38 rgaGtGAGwg CWCTCACTCY	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor rgaGtGAGwg AT3G46070:MA1381.2:JASPAR AT3G46070/MA1381.2/JASPAR R 7 0.7000 0.971 0.679 NA NA CURE3UTR1:EEAD0076:EEADannot CURE3UTR1/EEAD0076/EEADannot R 9 0.8182 0.757 0.619 NA NA STZ.ampDAP:M0304:AthalianaCistrome STZ.ampDAP/M0304/AthalianaCistrome R 8 0.8000 0.764 0.611 NA NA Total matches= 19 (16 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 157 (35.36%) Max nb of predicted sites per peak: 5  (gene-Lalb_Chr24g0398471) Mean nb of predicted sites per peak: 1.38	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 8   oligos_6nt_test_vs_ctrl_m8	k-mer sig=0.33; evalue=0.47 yvCTTTACyy RRGTAAAGBR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor yvCTTTACyy LOC_Os02g01380:M1284_1.02:CISBP LOC_Os02g01380/M1284_1.02/CISBP D 10 1.0000 0.763 0.763 NA NA e_gw1.392.16.1:M0660_1.02:CISBP e_gw1.392.16.1/M0660_1.02/CISBP R 9 0.9000 0.792 0.712 NA NA PHYPADRAFT_153324:MA0989.1:JASPAR PHYPADRAFT_153324/MA0989.1/JASPAR R 9 0.9000 0.790 0.711 NA NA Total matches= 90 (87 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 94 (21.17%) Max nb of predicted sites per peak: 2  (gene-Lalb_Chr25g0284981) Mean nb of predicted sites per peak: 1.13	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 9   oligos_6nt_test_vs_ctrl_m9	k-mer sig=0.28; evalue=0.52 byCaCTTCmc GKGAAGTGRV	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor byCaCTTCmc LEC1-A:UN0423.1:JASPAR LEC1-A/UN0423.1/JASPAR R 10 1.0000 0.740 0.740 NA NA AT2G31460:UN0390.1:JASPAR AT2G31460/UN0390.1/JASPAR R 10 0.8333 0.721 0.601 NA NA AT2G31460.DAP:M0726:AthalianaCistrome AT2G31460.DAP/M0726/AthalianaCistrome R 10 0.8333 0.721 0.601 NA NA Total matches= 26 (23 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 132 (29.73%) Max nb of predicted sites per peak: 3  (gene-Lalb_Chr07g0182181) Mean nb of predicted sites per peak: 1.15	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 10   oligos_6nt_test_vs_ctrl_m10	k-mer sig=1.12; evalue=0.076 ygaAACGGtgr YCACCGTTTCR	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor ygaAACGGtgr MYB70:MA1393.2:JASPAR MYB70/MA1393.2/JASPAR R 10 0.8333 0.889 0.741 NA NA MYB44.ampDAP:M0554:AthalianaCistrome MYB44.ampDAP/M0554/AthalianaCistrome D 11 1.0000 0.737 0.737 NA NA MYB3R1:MA1178.2:JASPAR MYB3R1/MA1178.2/JASPAR D 11 0.8462 0.869 0.735 NA NA Total matches= 70 (67 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 64 (14.41%) Max nb of predicted sites per peak: 3  (gene-Lalb_Chr05g0222061) Mean nb of predicted sites per peak: 1.14	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 11   oligos_8nt_test_vs_ctrl_m1	k-mer sig=1.59; evalue=0.026 tgGGaCCCACsc GSGTGGGTCCCA	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor tgGGaCCCACsc At1g72010.ampDAP:M0748:AthalianaCistrome At1g72010.ampDAP/M0748/AthalianaCistrome R 12 0.9231 0.917 0.846 NA NA At1g72010:MA1288.1:JASPAR At1g72010/MA1288.1/JASPAR R 12 0.9231 0.909 0.839 NA NA At1g69690.ampDAP:M0756:AthalianaCistrome At1g69690.ampDAP/M0756/AthalianaCistrome R 12 0.9231 0.906 0.836 NA NA Total matches= 77 (74 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 62 (13.96%) Max nb of predicted sites per peak: 3  (gene-Lalb_Chr14g0372811) Mean nb of predicted sites per peak: 1.27	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 12   oligos_8nt_test_vs_ctrl_m2	k-mer sig=0.12; evalue=0.76 mvACACAGtAry RYTACTGTGTBK	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor mvACACAGtAry ALOG:EEAD0170:EEADannot ALOG/EEAD0170/EEADannot R 11 0.9167 0.786 0.720 NA NA REF6:MA1415.1:JASPAR REF6/MA1415.1/JASPAR D 10 0.7692 0.711 0.547 NA NA Lysine-specific:6jnm_A:3D-footprint Lysine-specific/6jnm_A/3D-footprint R 7 0.5833 0.914 0.533 NA NA Total matches= 6 (3 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 22 (4.95%) Max nb of predicted sites per peak: 2  (gene-Lalb_Chr10g0101111) Mean nb of predicted sites per peak: 1.05	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 13   dyads_test_vs_ctrl_m1	k-mer sig=1.95; evalue=0.011 krCaGmrvbkkGtakr YMTACMMVBYKCTGYM	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor krCaGmrvbkkGtakr REM1:UN0407.1:JASPAR REM1/UN0407.1/JASPAR D 9 0.5625 0.756 0.425 NA NA SPL4:MA1058.1:JASPAR SPL4/MA1058.1/JASPAR R 9 0.5625 0.724 0.407 NA NA SPL4:M1563_1.02:CISBP SPL4/M1563_1.02/CISBP R 9 0.5625 0.721 0.405 NA NA Total matches= 4 (1 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 41 (9.23%) Max nb of predicted sites per peak: 2  (gene-Lalb_Chr17g0347951) Mean nb of predicted sites per peak: 1.07	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 14   dyads_test_vs_ctrl_m2	k-mer sig=1.73; evalue=0.019 chCACwktaCAmw WKTGTAMWGTGDG	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor chCACwktaCAmw RHL41:M0377_1.02:CISBP RHL41/M0377_1.02/CISBP R 7 0.5385 0.803 0.432 NA NA AT3G53600:M0374_1.02:CISBP AT3G53600/M0374_1.02/CISBP R 7 0.5385 0.787 0.424 NA NA AZF1:M0378_1.02:CISBP AZF1/M0378_1.02/CISBP R 7 0.5385 0.774 0.417 NA NA Total matches= 5 (2 more)		[ match table: html text ] [ alignments (logos): html text ]
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 29 (6.53%) Max nb of predicted sites per peak: 2  (gene-Lalb_Chr21g0308691) Mean nb of predicted sites per peak: 1.03	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 15   dyads_test_vs_ctrl_m3	k-mer sig=1.95; evalue=0.011 graaabrskbyssgskrtttaaCCaCkt AMGTGGTTAAAYMSCSSRVMSYVTTTYC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor graaabrskbyssgskrtttaaCCaCkt Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 33 (7.43%) Max nb of predicted sites per peak: 2  (gene-Lalb_Chr24g0397271) Mean nb of predicted sites per peak: 1.06	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]
Motif 16   dyads_test_vs_ctrl_m4	k-mer sig=1.95; evalue=0.011 gggGGcrsSbGsyRStGgKwssssgrgb VCYCSSSSWMCCASYRSCVSSYGCCCCC	[ k-mers: statistics assemblies ] [ matrix: tab_format transfac_format ]
footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match       columns aligned correlation cor gggGGcrsSbGsyRStGgKwssssgrgb Total matches= 0		No match
Predicted sites on test peaks	Distribution of sites Nb of predicted sites per peak Nb peaks with at least one predicted site: 84 (18.92%) Max nb of predicted sites per peak: 13  (gene-Lalb_Chr23g0269511) Mean nb of predicted sites per peak: 2.06	[ sites: text ] [ distribution: text ] [ sites per peak: text ] [ enrichment: text graph ]

Command:  peak-motifs  -v 1 -title MEnavajowhite2_Up3_W1 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.030021_2025-05-26.030021_yYdQnU/peak-motifspeak_seq -ctrl $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.030021_2025-05-26.030021_yYdQnU/peak-motifscontrol_seq -markov auto -disco oligos,dyads,positions -nmotifs 10 -minol 6 -maxol 8 -no_merge_lengths -2str -origin center -offset 200 -motif_db footprintDB-plants tf $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.030021_2025-05-26.030021_yYdQnU

Error: Cannot scale matrix with only null values
Error occurred on RSAT site: rsat; host server: rsat; admin: compbio@eead.csic.es

Warning: Matrix file is empty (file size is zero) $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.030021_2025-05-26.030021_yYdQnU/results/oligos_7nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_7nt_test_vs_ctrl_pssm_sig_matrices_rescaled.tf

Warning: Input file contained not a single matrix

Error: OpenInputFile: File tmp/www-data/2025/05/26/peak-motifs.2025-05-26.030021_2025-05-26.030021_yYdQnU/results/oligos_7nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_7nt_test_vs_ctrl_pssm_sig_sites.ft does not exist.
Error occurred on RSAT site: rsat; host server: rsat; admin: compbio@eead.csic.es

Warning: Matrix file is empty (file size is zero) $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.030021_2025-05-26.030021_yYdQnU/results/oligos_7nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_7nt_test_vs_ctrl_pssm_count_matrices.tf

Warning: Input file contained not a single matrix

Warning: Matrix file is empty (file size is zero) $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.030021_2025-05-26.030021_yYdQnU/results/oligos_7nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_7nt_test_vs_ctrl_pssm_count_matrices.tf

Warning: Input file contained not a single matrix