peak-motifs MEblack_Up3

Motif discovery

Motif 1 oligos_6nt_test_vs_ctrl_m1

k-mer sig=98.38; evalue=4.2e-99

mcyaAAACCCtaahyc

GRDTTAGGGTTTTRGK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mcyaAAACCCtaahyc

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 15 0.9375 0.931 0.873 NA NA

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR D 15 0.9375 0.889 0.833 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 14 0.8235 0.961 0.792 NA NA

Total matches= 38 (35 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 787 (21.68%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr20g0122851)
Mean nb of predicted sites per peak: 1.17

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_test_vs_ctrl_m2

k-mer sig=46.36; evalue=4.4e-47

sgaGGCCCAaacs

SGTTTGGGCCTCS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sgaGGCCCAaacs

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 13 0.8667 0.964 0.836 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 13 0.8667 0.918 0.795 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.6923 0.971 0.672 NA NA

Total matches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 538 (14.82%)
Max nb of predicted sites per peak: 6
(gene-Lalb_Chr01g0004301)
Mean nb of predicted sites per peak: 1.27

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_test_vs_ctrl_m3

k-mer sig=44.03; evalue=9.3e-45

mvaaGCCCAaams

SKTTTGGGCTTBK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mvaaGCCCAaams

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 13 0.8667 0.875 0.758 NA NA

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 13 0.8667 0.850 0.737 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.6923 0.855 0.592 NA NA

Total matches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 472 (13.00%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr02g0152301)
Mean nb of predicted sites per peak: 1.20

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_test_vs_ctrl_m4

k-mer sig=27.80; evalue=1.6e-28

cytttCCCGCCatyg

CRATGGCGGGAAARG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cytttCCCGCCatyg

E2FD:MA1732.1:JASPAR E2FD/MA1732.1/JASPAR R 14 0.8750 0.850 0.743 NA NA

DEL2.ampDAP:M0366:AthalianaCistrome DEL2.ampDAP/M0366/AthalianaCistrome R 14 0.8750 0.850 0.743 NA NA

DEL1.ampDAP:M0365:AthalianaCistrome DEL1.ampDAP/M0365/AthalianaCistrome R 14 0.8750 0.846 0.740 NA NA

Total matches= 18 (15 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 414 (11.40%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr10g0091931)
Mean nb of predicted sites per peak: 1.14

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_test_vs_ctrl_m5

k-mer sig=23.54; evalue=2.9e-24

cyCCaACGGCtacg

CGTAGCCGTTGGRG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cyCCaACGGCtacg

MYB3R3:EEAD0045:EEADannot MYB3R3/EEAD0045/EEADannot R 14 1.0000 0.810 0.810 NA NA

ZIM.DAP:M0290:AthalianaCistrome ZIM.DAP/M0290/AthalianaCistrome R 14 0.9333 0.770 0.719 NA NA

MYB3R4:MA1180.2:JASPAR MYB3R4/MA1180.2/JASPAR R 11 0.7333 0.867 0.636 NA NA

Total matches= 23 (20 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 433 (11.93%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr12g0199901)
Mean nb of predicted sites per peak: 1.19

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 oligos_6nt_test_vs_ctrl_m6

k-mer sig=23.43; evalue=3.7e-24

mtCCAACGGtCvm

KBGACCGTTGGAK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mtCCAACGGtCvm

MYB3R1:MA1178.2:JASPAR MYB3R1/MA1178.2/JASPAR D 13 1.0000 0.879 0.879 NA NA

ZIM.DAP:M0290:AthalianaCistrome ZIM.DAP/M0290/AthalianaCistrome R 13 0.8667 0.834 0.723 NA NA

MYB70:MA1393.2:JASPAR MYB70/MA1393.2/JASPAR R 11 0.8462 0.789 0.667 NA NA

Total matches= 51 (48 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 352 (9.70%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr21g0309841)
Mean nb of predicted sites per peak: 1.15

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 oligos_6nt_test_vs_ctrl_m7

k-mer sig=46.36; evalue=4.4e-47

gkraaaTGGGCCtkr

YMAGGCCCATTTYMC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gkraaaTGGGCCtkr

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR R 14 0.8750 0.945 0.827 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot D 14 0.8750 0.938 0.821 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR R 9 0.6000 0.958 0.575 NA NA

Total matches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 551 (15.18%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr04g0258261)
Mean nb of predicted sites per peak: 1.29

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_6nt_test_vs_ctrl_m8

k-mer sig=15.18; evalue=6.6e-16

rraGAGtGaGagr

YCTCTCACTCTYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rraGAGtGaGagr

AT3G46070:MA1381.1:JASPAR AT3G46070/MA1381.1/JASPAR R 13 0.8667 0.916 0.794 NA NA

BPC1.ampDAP:M0149:AthalianaCistrome BPC1.ampDAP/M0149/AthalianaCistrome R 13 0.8667 0.785 0.680 NA NA

CURE3UTR1:EEAD0076:EEADannot CURE3UTR1/EEAD0076/EEADannot R 10 0.7692 0.861 0.662 NA NA

Total matches= 15 (12 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1147 (31.60%)
Max nb of predicted sites per peak: 7
(gene-Lalb_Chr13g0297981)
Mean nb of predicted sites per peak: 1.63

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 oligos_6nt_test_vs_ctrl_m9

k-mer sig=98.38; evalue=4.2e-99

ggkttaGGGtttaaaCCCtaamsb

VSKTTAGGGTTTAAACCCTAAMCC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ggkttaGGGtttaaaCCCtaamsb

TBP3.ampDAP:M0621:AthalianaCistrome TBP3.ampDAP/M0621/AthalianaCistrome D 19 0.7917 0.715 0.566 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 15 0.6250 0.794 0.496 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 14 0.5600 0.857 0.480 NA NA

Total matches= 7 (4 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 140 (3.86%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr25g0279921)
Mean nb of predicted sites per peak: 1.71

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_6nt_test_vs_ctrl_m10

k-mer sig=98.38; evalue=4.2e-99

ccyaAAACCCTaryy

RRYTAGGGTTTTRGG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ccyaAAACCCTaryy

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR D 15 1.0000 0.852 0.852 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 14 0.8750 0.907 0.793 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 13 0.7647 0.936 0.716 NA NA

Total matches= 32 (29 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 742 (20.44%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr20g0122851)
Mean nb of predicted sites per peak: 1.15

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_7nt_test_vs_ctrl_m1

k-mer sig=118.18; evalue=6.6e-119

csyaAAACCCTAayyy

RRRTTAGGGTTTTRSG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor csyaAAACCCTAayyy

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 15 0.9375 0.918 0.860 NA NA

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR D 15 0.9375 0.885 0.829 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 14 0.8235 0.951 0.784 NA NA

Total matches= 34 (31 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 753 (20.74%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr20g0122851)
Mean nb of predicted sites per peak: 1.17

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_7nt_test_vs_ctrl_m2

k-mer sig=36.85; evalue=1.4e-37

vyaaaGCCCAatws

SWATTGGGCTTTRB

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor vyaaaGCCCAatws

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 14 0.9333 0.854 0.797 NA NA

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 14 0.9333 0.841 0.785 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.6429 0.872 0.561 NA NA

Total matches= 7 (4 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 437 (12.04%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr20g0112921)
Mean nb of predicted sites per peak: 1.19

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 oligos_7nt_test_vs_ctrl_m3

k-mer sig=33.79; evalue=1.6e-34

vycaGGCCCAatys

SRATTGGGCCTGRB

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor vycaGGCCCAatys

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 14 0.9333 0.981 0.915 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 14 0.9333 0.884 0.825 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.6429 0.991 0.637 NA NA

Total matches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 444 (12.23%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr02g0152301)
Mean nb of predicted sites per peak: 1.19

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 oligos_7nt_test_vs_ctrl_m4

k-mer sig=118.18; evalue=6.6e-119

grrtTaGGGTTTargg

CCYTAAACCCTAAYYC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor grrtTaGGGTTTargg

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 15 0.9375 0.941 0.883 NA NA

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR R 15 0.9375 0.916 0.859 NA NA

TBP3.ampDAP:M0621:AthalianaCistrome TBP3.ampDAP/M0621/AthalianaCistrome D 16 0.8421 0.946 0.797 NA NA

Total matches= 36 (33 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 950 (26.17%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr24g0399901)
Mean nb of predicted sites per peak: 1.23

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 oligos_7nt_test_vs_ctrl_m5

k-mer sig=28.45; evalue=3.5e-29

rraatGGCGGGaaarg

CYTTTCCCGCCATTYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rraatGGCGGGaaarg

E2FD:MA1732.1:JASPAR E2FD/MA1732.1/JASPAR D 15 0.9375 0.820 0.769 NA NA

DEL2.ampDAP:M0366:AthalianaCistrome DEL2.ampDAP/M0366/AthalianaCistrome D 15 0.9375 0.820 0.769 NA NA

DEL1.ampDAP:M0365:AthalianaCistrome DEL1.ampDAP/M0365/AthalianaCistrome D 15 0.9375 0.815 0.764 NA NA

Total matches= 16 (13 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 604 (16.64%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr24g0400071)
Mean nb of predicted sites per peak: 1.19

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 16 oligos_7nt_test_vs_ctrl_m6

k-mer sig=118.18; evalue=6.6e-119

scyaAAACCCTAryyc

GRRYTAGGGTTTTRGS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor scyaAAACCCTAryyc

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 15 0.9375 0.896 0.840 NA NA

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR D 15 0.9375 0.854 0.801 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 14 0.8235 0.929 0.765 NA NA

Total matches= 30 (27 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 746 (20.55%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr20g0122851)
Mean nb of predicted sites per peak: 1.15

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 17 oligos_7nt_test_vs_ctrl_m7

k-mer sig=18.65; evalue=2.2e-19

vctCCaaCGGCtaCgr

YCGTAGCCGTTGGAGB

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor vctCCaaCGGCtaCgr

MYB3R3:EEAD0045:EEADannot MYB3R3/EEAD0045/EEADannot R 14 0.8750 0.790 0.691 NA NA

ZIM.DAP:M0290:AthalianaCistrome ZIM.DAP/M0290/AthalianaCistrome R 15 0.9375 0.725 0.679 NA NA

MYB3R4:MA1180.2:JASPAR MYB3R4/MA1180.2/JASPAR R 12 0.7500 0.847 0.636 NA NA

Total matches= 11 (8 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 405 (11.16%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr01g0005111)
Mean nb of predicted sites per peak: 1.16

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 18 oligos_7nt_test_vs_ctrl_m8

k-mer sig=33.79; evalue=1.6e-34

sccaGGCCCAaaasv

BSTTTTGGGCCTGGS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sccaGGCCCAaaasv

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 15 1.0000 0.945 0.945 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 15 1.0000 0.878 0.878 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.6000 0.952 0.571 NA NA

Total matches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 442 (12.18%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr01g0004301)
Mean nb of predicted sites per peak: 1.20

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 19 oligos_7nt_test_vs_ctrl_m9

k-mer sig=36.85; evalue=1.4e-37

scaAaGCCCAtttcvc

GBGAAATGGGCTTTGS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor scaAaGCCCAtttcvc

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 15 0.9375 0.848 0.795 NA NA

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 15 0.9375 0.775 0.726 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.5625 0.816 0.459 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 369 (10.17%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr04g0258261)
Mean nb of predicted sites per peak: 1.16

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 20 oligos_7nt_test_vs_ctrl_m10

k-mer sig=14.13; evalue=7.4e-15

kkGaCCGTTGGakg

CMTCCAACGGTCMM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kkGaCCGTTGGakg

MYB3R1:MA1178.2:JASPAR MYB3R1/MA1178.2/JASPAR R 13 0.9286 0.834 0.774 NA NA

ZIM.DAP:M0290:AthalianaCistrome ZIM.DAP/M0290/AthalianaCistrome D 13 0.8125 0.815 0.662 NA NA

MYB73:MA1394.2:JASPAR MYB73/MA1394.2/JASPAR R 11 0.7333 0.828 0.607 NA NA

Total matches= 34 (31 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 379 (10.44%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr21g0309841)
Mean nb of predicted sites per peak: 1.11

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 21 oligos_8nt_test_vs_ctrl_m1

k-mer sig=120.54; evalue=2.9e-121

cccaAAACCCTAatyyc

GRRATTAGGGTTTTGGG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cccaAAACCCTAatyyc

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 15 0.8824 0.960 0.847 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 15 0.8824 0.933 0.823 NA NA

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR D 17 0.8947 0.885 0.792 NA NA

Total matches= 31 (28 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 733 (20.19%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr20g0122851)
Mean nb of predicted sites per peak: 1.16

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 22 oligos_8nt_test_vs_ctrl_m2

k-mer sig=120.54; evalue=2.9e-121

sccaAAACCCTArcyc

GRGYTAGGGTTTTGGS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sccaAAACCCTArcyc

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 15 0.9375 0.906 0.850 NA NA

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR D 15 0.9375 0.837 0.785 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 14 0.8235 0.933 0.768 NA NA

Total matches= 31 (28 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 760 (20.94%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr20g0122851)
Mean nb of predicted sites per peak: 1.16

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 23 oligos_8nt_test_vs_ctrl_m3

k-mer sig=120.54; evalue=2.9e-121

grrrtTaGGGTTTarggk

MCCYTAAACCCTAAYYYC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor grrrtTaGGGTTTarggk

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR R 18 0.9474 0.916 0.867 NA NA

TBP3.ampDAP:M0621:AthalianaCistrome TBP3.ampDAP/M0621/AthalianaCistrome D 17 0.8500 0.947 0.805 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 15 0.8333 0.962 0.802 NA NA

Total matches= 28 (25 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 934 (25.73%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr24g0399901)
Mean nb of predicted sites per peak: 1.22

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 24 oligos_8nt_test_vs_ctrl_m4

k-mer sig=21.83; evalue=1.5e-22

vvaaAaGCCCAattkr

YMAATTGGGCTTTTBB

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor vvaaAaGCCCAattkr

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 15 0.9375 0.805 0.755 NA NA

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 15 0.9375 0.794 0.744 NA NA

AT1G72740:MA1353.2:JASPAR AT1G72740/MA1353.2/JASPAR R 11 0.6875 0.708 0.487 NA NA

Total matches= 13 (10 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 359 (9.89%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr25g0279921)
Mean nb of predicted sites per peak: 1.16

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 25 oligos_8nt_test_vs_ctrl_m5

k-mer sig=21.72; evalue=1.9e-22

rrttttGGCGGGaaaakr

YMTTTTCCCGCCAAAAYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrttttGGCGGGaaaakr

E2FD:MA1732.1:JASPAR E2FD/MA1732.1/JASPAR D 15 0.8333 0.978 0.815 NA NA

DEL2.ampDAP:M0366:AthalianaCistrome DEL2.ampDAP/M0366/AthalianaCistrome D 15 0.8333 0.978 0.815 NA NA

DEL1.ampDAP:M0365:AthalianaCistrome DEL1.ampDAP/M0365/AthalianaCistrome D 15 0.8333 0.977 0.814 NA NA

Total matches= 14 (11 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 528 (14.55%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr24g0399901)
Mean nb of predicted sites per peak: 1.15

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 26 oligos_8nt_test_vs_ctrl_m6

k-mer sig=20.76; evalue=1.7e-21

kytaGGCCCAaatsv

BSATTTGGGCCTARM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kytaGGCCCAaatsv

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 15 1.0000 0.926 0.926 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 15 1.0000 0.871 0.871 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.6000 0.946 0.567 NA NA

Total matches= 3

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 419 (11.54%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr19g0138401)
Mean nb of predicted sites per peak: 1.21

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 27 oligos_8nt_test_vs_ctrl_m7

k-mer sig=19.81; evalue=1.5e-20

krmtCCaACGGCtaCgk

MCGTAGCCGTTGGAKYM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor krmtCCaACGGCtaCgk

MYB3R3:EEAD0045:EEADannot MYB3R3/EEAD0045/EEADannot R 14 0.8235 0.811 0.668 NA NA

ZIM.DAP:M0290:AthalianaCistrome ZIM.DAP/M0290/AthalianaCistrome R 15 0.8824 0.749 0.661 NA NA

MYB3R4:MA1180.2:JASPAR MYB3R4/MA1180.2/JASPAR R 12 0.7059 0.858 0.605 NA NA

Total matches= 16 (13 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 412 (11.35%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr12g0199901)
Mean nb of predicted sites per peak: 1.17

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 28 oligos_8nt_test_vs_ctrl_m8

k-mer sig=120.54; evalue=2.9e-121

grrrtTaGGGTTTckgg

CCMGAAACCCTAAYYYC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor grrrtTaGGGTTTckgg

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 15 0.8824 0.965 0.851 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 15 0.8824 0.936 0.826 NA NA

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR R 17 0.8947 0.907 0.811 NA NA

Total matches= 28 (25 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 920 (25.34%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr24g0399901)
Mean nb of predicted sites per peak: 1.23

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 29 oligos_8nt_test_vs_ctrl_m9

k-mer sig=120.54; evalue=2.9e-121

grrrtTaGGGTTTtrggk

MCCYAAAACCCTAAYYYC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor grrrtTaGGGTTTtrggk

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR R 18 0.9474 0.887 0.840 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 15 0.8333 0.948 0.790 NA NA

TBP3.ampDAP:M0621:AthalianaCistrome TBP3.ampDAP/M0621/AthalianaCistrome D 17 0.8500 0.919 0.781 NA NA

Total matches= 25 (22 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 929 (25.59%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr24g0399901)
Mean nb of predicted sites per peak: 1.23

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 30 oligos_8nt_test_vs_ctrl_m10

k-mer sig=11.01; evalue=9.8e-12

gsatCCAACGGtCamr

YKTGACCGTTGGATSC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gsatCCAACGGtCamr

MYB3R1:MA1178.2:JASPAR MYB3R1/MA1178.2/JASPAR D 13 0.8125 0.865 0.703 NA NA

ZIM.DAP:M0290:AthalianaCistrome ZIM.DAP/M0290/AthalianaCistrome R 14 0.8235 0.837 0.690 NA NA

MYB73:MA1394.2:JASPAR MYB73/MA1394.2/JASPAR D 12 0.7500 0.887 0.665 NA NA

Total matches= 38 (35 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 300 (8.26%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr19g0139701)
Mean nb of predicted sites per peak: 1.14

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 31 dyads_test_vs_ctrl_m1

k-mer sig=99.24; evalue=5.8e-100

msaaAAACCCTaatyy

RRATTAGGGTTTTTSK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor msaaAAACCCTaatyy

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 15 0.9375 0.914 0.857 NA NA

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR D 15 0.9375 0.875 0.821 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 14 0.8235 0.949 0.781 NA NA

Total matches= 34 (31 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 753 (20.74%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr20g0122851)
Mean nb of predicted sites per peak: 1.16

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 32 dyads_test_vs_ctrl_m2

k-mer sig=47.88; evalue=1.3e-48

ktaGGCCCAaatsr

YSATTTGGGCCTAM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ktaGGCCCAaatsr

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 14 0.9333 0.938 0.876 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 14 0.9333 0.889 0.830 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.6429 0.956 0.614 NA NA

Total matches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 463 (12.75%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr19g0138401)
Mean nb of predicted sites per peak: 1.21

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 33 dyads_test_vs_ctrl_m3

k-mer sig=69.17; evalue=6.8e-70

ssaaAAGCCCaaatsr

YSATTTGGGCTTTTSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssaaAAGCCCaaatsr

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 15 0.9375 0.788 0.739 NA NA

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 15 0.9375 0.750 0.703 NA NA

TRB2:MA1355.2:JASPAR TRB2/MA1355.2/JASPAR D 11 0.6875 0.738 0.507 NA NA

Total matches= 14 (11 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 394 (10.85%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr24g0402931)
Mean nb of predicted sites per peak: 1.15

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 34 dyads_test_vs_ctrl_m4

k-mer sig=29.40; evalue=4e-30

bsttttCCCGCCathk

MDATGGCGGGAAAASV

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor bsttttCCCGCCathk

E2FD:UN0361.1:JASPAR E2FD/UN0361.1/JASPAR R 15 0.8824 0.910 0.803 NA NA

E2FD:MA1732.1:JASPAR E2FD/MA1732.1/JASPAR R 14 0.8235 0.886 0.730 NA NA

DEL2.ampDAP:M0366:AthalianaCistrome DEL2.ampDAP/M0366/AthalianaCistrome R 14 0.8235 0.886 0.730 NA NA

Total matches= 16 (13 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 402 (11.07%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr24g0399901)
Mean nb of predicted sites per peak: 1.12

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 35 dyads_test_vs_ctrl_m5

k-mer sig=25.20; evalue=6.3e-26

cyCCaACGGCtacg

CGTAGCCGTTGGRG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cyCCaACGGCtacg

MYB3R3:EEAD0045:EEADannot MYB3R3/EEAD0045/EEADannot R 14 1.0000 0.802 0.802 NA NA

ZIM.DAP:M0290:AthalianaCistrome ZIM.DAP/M0290/AthalianaCistrome R 14 0.9333 0.768 0.717 NA NA

MYB3R4:MA1180.2:JASPAR MYB3R4/MA1180.2/JASPAR R 11 0.7333 0.865 0.634 NA NA

Total matches= 23 (20 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 421 (11.60%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr12g0199901)
Mean nb of predicted sites per peak: 1.18

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 36 dyads_test_vs_ctrl_m6

k-mer sig=99.24; evalue=5.8e-100

ktGGGGyTTaGgk

MCCTAARCCCCAM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ktGGGGyTTaGgk

XM_002876896.1:M1282_1.02:CISBP XM_002876896.1/M1282_1.02/CISBP R 13 1.0000 0.734 0.734 NA NA

AT1G76870:MA1367.1:JASPAR AT1G76870/MA1367.1/JASPAR R 13 0.9286 0.760 0.706 NA NA

TRP5:MA1802.1:JASPAR TRP5/MA1802.1/JASPAR R 10 0.7692 0.913 0.703 NA NA

Total matches= 23 (20 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 723 (19.92%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr24g0395111)
Mean nb of predicted sites per peak: 1.21

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 37 dyads_test_vs_ctrl_m7

k-mer sig=24.72; evalue=1.9e-25

cbCCaACGGtbv

BVACCGTTGGVG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cbCCaACGGtbv

MYB3R1:MA1178.2:JASPAR MYB3R1/MA1178.2/JASPAR D 12 0.9231 0.859 0.793 NA NA

PC-MYB1:MA2352.1:JASPAR PC-MYB1/MA2352.1/JASPAR R 9 0.7500 0.921 0.690 NA NA

ZIM.DAP:M0290:AthalianaCistrome ZIM.DAP/M0290/AthalianaCistrome R 12 0.8000 0.856 0.685 NA NA

Total matches= 56 (53 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 460 (12.67%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr07g0192961)
Mean nb of predicted sites per peak: 1.20

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 38 dyads_test_vs_ctrl_m8

k-mer sig=47.88; evalue=1.3e-48

kdaaTGGGCCtgr

YCAGGCCCATTHM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kdaaTGGGCCtgr

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR R 13 0.8667 0.959 0.831 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot D 13 0.8667 0.948 0.822 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR R 9 0.6923 0.965 0.668 NA NA

Total matches= 13 (10 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 591 (16.28%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr02g0152301)
Mean nb of predicted sites per peak: 1.28

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 39 dyads_test_vs_ctrl_m9

k-mer sig=14.87; evalue=1.3e-15

rrAGAGtGAarr

YYTTCACTCTYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrAGAGtGAarr

AT3G46070:MA1381.1:JASPAR AT3G46070/MA1381.1/JASPAR R 12 0.8000 0.907 0.725 NA NA

AZF1:MA2372.1:JASPAR AZF1/MA2372.1/JASPAR R 9 0.7500 0.804 0.603 NA NA

STZ.ampDAP:M0304:AthalianaCistrome STZ.ampDAP/M0304/AthalianaCistrome R 8 0.6667 0.890 0.594 NA NA

Total matches= 19 (16 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 1036 (28.54%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr17g0346261)
Mean nb of predicted sites per peak: 1.25

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 40 dyads_test_vs_ctrl_m10

k-mer sig=99.24; evalue=5.8e-100

scaaAAACCCTaryy

RRYTAGGGTTTTTGS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor scaaAAACCCTaryy

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR D 15 1.0000 0.842 0.842 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 14 0.8750 0.898 0.786 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 13 0.7647 0.928 0.710 NA NA

Total matches= 31 (28 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 734 (20.22%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr20g0122851)
Mean nb of predicted sites per peak: 1.16

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]
Discovered motifs versus transcription factor databases
Motifs versus footprintDB-plants database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: MEblack_Up3_W1 (26/05/2025 08:29)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results