peak-motifs MEblack_Up3

Motif discovery

Motif 1 oligos_6nt_test_vs_ctrl_m1

k-mer sig=114.01; evalue=9.8e-115

mcmaAAACCCTaayyy

RRRTTAGGGTTTTKGK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mcmaAAACCCTaayyy

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 15 0.9375 0.932 0.873 NA NA

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR D 15 0.9375 0.888 0.832 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 14 0.8235 0.962 0.793 NA NA

Total matches= 36 (33 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 730 (23.41%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr20g0122851)
Mean nb of predicted sites per peak: 1.17

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_test_vs_ctrl_m2

k-mer sig=60.12; evalue=7.6e-61

bbaGGCCCAaacv

BGTTTGGGCCTVV

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor bbaGGCCCAaacv

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 13 0.8667 0.965 0.837 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 13 0.8667 0.921 0.798 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.6923 0.972 0.673 NA NA

Total matches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 514 (16.48%)
Max nb of predicted sites per peak: 6
(gene-Lalb_Chr01g0004301)
Mean nb of predicted sites per peak: 1.28

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_test_vs_ctrl_m3

k-mer sig=55.25; evalue=5.6e-56

mvaaGCCCAaams

SKTTTGGGCTTBK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mvaaGCCCAaams

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 13 0.8667 0.876 0.759 NA NA

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 13 0.8667 0.851 0.738 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.6923 0.856 0.593 NA NA

Total matches= 5 (2 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 454 (14.56%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr18g0055141)
Mean nb of predicted sites per peak: 1.20

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_test_vs_ctrl_m4

k-mer sig=32.42; evalue=3.8e-33

cytttCCCGCCatyg

CRATGGCGGGAAARG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cytttCCCGCCatyg

E2FD:MA1732.1:JASPAR E2FD/MA1732.1/JASPAR R 14 0.8750 0.848 0.742 NA NA

DEL2.ampDAP:M0366:AthalianaCistrome DEL2.ampDAP/M0366/AthalianaCistrome R 14 0.8750 0.848 0.742 NA NA

DEL1.ampDAP:M0365:AthalianaCistrome DEL1.ampDAP/M0365/AthalianaCistrome R 14 0.8750 0.845 0.739 NA NA

Total matches= 19 (16 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 372 (11.93%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr10g0091931)
Mean nb of predicted sites per peak: 1.15

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_test_vs_ctrl_m5

k-mer sig=24.53; evalue=3e-25

myCCaACGGCtacg

CGTAGCCGTTGGRK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor myCCaACGGCtacg

MYB3R3:EEAD0045:EEADannot MYB3R3/EEAD0045/EEADannot R 14 1.0000 0.808 0.808 NA NA

ZIM.DAP:M0290:AthalianaCistrome ZIM.DAP/M0290/AthalianaCistrome R 14 0.9333 0.769 0.718 NA NA

MYB3R4:MA1180.2:JASPAR MYB3R4/MA1180.2/JASPAR R 11 0.7333 0.865 0.635 NA NA

Total matches= 23 (20 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 370 (11.87%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr12g0199901)
Mean nb of predicted sites per peak: 1.18

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 oligos_6nt_test_vs_ctrl_m6

k-mer sig=60.12; evalue=7.6e-61

kgaaaTGGGCCtkr

YMAGGCCCATTTCM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kgaaaTGGGCCtkr

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR R 14 0.9333 0.952 0.889 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot D 14 0.9333 0.946 0.883 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR R 9 0.6429 0.962 0.618 NA NA

Total matches= 15 (12 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 556 (17.83%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr04g0258261)
Mean nb of predicted sites per peak: 1.31

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 oligos_6nt_test_vs_ctrl_m7

k-mer sig=114.01; evalue=9.8e-115

scmaAAACCCTaryy

RRYTAGGGTTTTKGS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor scmaAAACCCTaryy

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR D 15 1.0000 0.851 0.851 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 14 0.8750 0.908 0.794 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 13 0.7647 0.936 0.716 NA NA

Total matches= 32 (29 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 707 (22.67%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr20g0122851)
Mean nb of predicted sites per peak: 1.17

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_6nt_test_vs_ctrl_m8

k-mer sig=22.80; evalue=1.6e-23

mtCCAACGGtCvm

KBGACCGTTGGAK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mtCCAACGGtCvm

MYB3R1:MA1178.2:JASPAR MYB3R1/MA1178.2/JASPAR D 13 1.0000 0.883 0.883 NA NA

ZIM.DAP:M0290:AthalianaCistrome ZIM.DAP/M0290/AthalianaCistrome R 13 0.8667 0.832 0.721 NA NA

MYB73:MA1394.2:JASPAR MYB73/MA1394.2/JASPAR D 11 0.7857 0.848 0.667 NA NA

Total matches= 51 (48 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 300 (9.62%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr21g0309841)
Mean nb of predicted sites per peak: 1.13

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 oligos_6nt_test_vs_ctrl_m9

k-mer sig=32.42; evalue=3.8e-33

cctytCCCGCCGCCrycg

CGRYGGCGGCGGGARAGG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cctytCCCGCCGCCrycg

ERF4.ampDAP:M0033:AthalianaCistrome ERF4.ampDAP/M0033/AthalianaCistrome R 18 0.9000 0.866 0.779 NA NA

ERF11.ampDAP:M0072:AthalianaCistrome ERF11.ampDAP/M0072/AthalianaCistrome R 18 0.9000 0.858 0.772 NA NA

ERF8.ampDAP:M0046:AthalianaCistrome ERF8.ampDAP/M0046/AthalianaCistrome R 17 0.8947 0.862 0.771 NA NA

Total matches= 199 (196 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 464 (14.88%)
Max nb of predicted sites per peak: 11
(gene-Lalb_Chr22g0359191)
Mean nb of predicted sites per peak: 2.03

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_6nt_test_vs_ctrl_m10

k-mer sig=114.01; evalue=9.8e-115

grrttaGGGTTTargg

CCYTAAACCCTAAYYC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor grrttaGGGTTTargg

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 15 0.9375 0.945 0.886 NA NA

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR R 15 0.9375 0.912 0.855 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 14 0.8235 0.969 0.798 NA NA

Total matches= 36 (33 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 938 (30.08%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr24g0399901)
Mean nb of predicted sites per peak: 1.25

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_7nt_test_vs_ctrl_m1

k-mer sig=136.86; evalue=1.4e-137

ssyaAAACCCTAayyyc

GRRRTTAGGGTTTTRSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssyaAAACCCTAayyyc

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 15 0.8824 0.952 0.840 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 15 0.8824 0.921 0.813 NA NA

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR D 17 0.8947 0.887 0.794 NA NA

Total matches= 29 (26 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 709 (22.74%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr20g0122851)
Mean nb of predicted sites per peak: 1.16

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_7nt_test_vs_ctrl_m2

k-mer sig=45.17; evalue=6.8e-46

syaaaGCCCAatws

SWATTGGGCTTTRS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor syaaaGCCCAatws

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 14 0.9333 0.860 0.802 NA NA

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 14 0.9333 0.847 0.791 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.6429 0.877 0.564 NA NA

Total matches= 7 (4 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 422 (13.53%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr24g0393341)
Mean nb of predicted sites per peak: 1.21

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 oligos_7nt_test_vs_ctrl_m3

k-mer sig=41.34; evalue=4.6e-42

rytaGGCCCAathv

BDATTGGGCCTARY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rytaGGCCCAathv

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 14 0.9333 0.966 0.902 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 14 0.9333 0.886 0.827 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.6429 0.989 0.636 NA NA

Total matches= 12 (9 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 409 (13.12%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr10g0102881)
Mean nb of predicted sites per peak: 1.24

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 oligos_7nt_test_vs_ctrl_m4

k-mer sig=34.43; evalue=3.7e-35

rraatGGCGGGaaark

MYTTTCCCGCCATTYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rraatGGCGGGaaark

E2FD:MA1732.1:JASPAR E2FD/MA1732.1/JASPAR D 15 0.9375 0.819 0.768 NA NA

DEL2.ampDAP:M0366:AthalianaCistrome DEL2.ampDAP/M0366/AthalianaCistrome D 15 0.9375 0.819 0.768 NA NA

DEL1.ampDAP:M0365:AthalianaCistrome DEL1.ampDAP/M0365/AthalianaCistrome D 15 0.9375 0.814 0.763 NA NA

Total matches= 16 (13 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 536 (17.19%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr24g0400071)
Mean nb of predicted sites per peak: 1.19

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 oligos_7nt_test_vs_ctrl_m5

k-mer sig=136.86; evalue=1.4e-137

scyaAAACCCTAryyc

GRRYTAGGGTTTTRGS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor scyaAAACCCTAryyc

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 15 0.9375 0.900 0.843 NA NA

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR D 15 0.9375 0.857 0.803 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 14 0.8235 0.931 0.767 NA NA

Total matches= 30 (27 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 699 (22.42%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr20g0122851)
Mean nb of predicted sites per peak: 1.16

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 16 oligos_7nt_test_vs_ctrl_m6

k-mer sig=136.86; evalue=1.4e-137

grrrtTaGGGTTTargg

CCYTAAACCCTAAYYYC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor grrrtTaGGGTTTargg

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 15 0.8824 0.966 0.853 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 15 0.8824 0.944 0.833 NA NA

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR R 17 0.8947 0.916 0.820 NA NA

Total matches= 30 (27 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 916 (29.38%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr24g0399901)
Mean nb of predicted sites per peak: 1.23

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 17 oligos_7nt_test_vs_ctrl_m7

k-mer sig=20.63; evalue=2.3e-21

rctCCaaCGGCtaCgr

YCGTAGCCGTTGGAGY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rctCCaaCGGCtaCgr

MYB3R3:EEAD0045:EEADannot MYB3R3/EEAD0045/EEADannot R 14 0.8750 0.798 0.698 NA NA

ZIM.DAP:M0290:AthalianaCistrome ZIM.DAP/M0290/AthalianaCistrome R 15 0.9375 0.717 0.672 NA NA

MYB3R4:MA1180.2:JASPAR MYB3R4/MA1180.2/JASPAR R 12 0.7500 0.849 0.637 NA NA

Total matches= 11 (8 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 354 (11.35%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr12g0199901)
Mean nb of predicted sites per peak: 1.16

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 18 oligos_7nt_test_vs_ctrl_m8

k-mer sig=41.34; evalue=4.6e-42

gytaGGCCCAaams

SKTTTGGGCCTARC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gytaGGCCCAaams

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 14 0.9333 0.932 0.870 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 14 0.9333 0.882 0.823 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.6429 0.949 0.610 NA NA

Total matches= 9 (6 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 435 (13.95%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr02g0152301)
Mean nb of predicted sites per peak: 1.23

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 19 oligos_7nt_test_vs_ctrl_m9

k-mer sig=45.17; evalue=6.8e-46

syaAaGCCCAtttcvc

GBGAAATGGGCTTTRS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor syaAaGCCCAtttcvc

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 15 0.9375 0.853 0.800 NA NA

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 15 0.9375 0.781 0.732 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.5625 0.821 0.462 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 342 (10.97%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr04g0258261)
Mean nb of predicted sites per peak: 1.18

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 20 oligos_7nt_test_vs_ctrl_m10

k-mer sig=13.21; evalue=6.2e-14

smtCCAACGGtCvm

KBGACCGTTGGAKS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor smtCCAACGGtCvm

MYB3R1:MA1178.2:JASPAR MYB3R1/MA1178.2/JASPAR D 13 0.9286 0.844 0.783 NA NA

ZIM.DAP:M0290:AthalianaCistrome ZIM.DAP/M0290/AthalianaCistrome R 13 0.8125 0.822 0.668 NA NA

MYB73:MA1394.2:JASPAR MYB73/MA1394.2/JASPAR D 11 0.7333 0.840 0.616 NA NA

Total matches= 38 (35 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 254 (8.15%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr21g0309841)
Mean nb of predicted sites per peak: 1.11

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 21 oligos_8nt_test_vs_ctrl_m1

k-mer sig=137.04; evalue=9.1e-138

mccaAAACCCTAatyyc

GRRATTAGGGTTTTGGK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mccaAAACCCTAatyyc

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 15 0.8824 0.960 0.847 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 15 0.8824 0.933 0.823 NA NA

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR D 17 0.8947 0.885 0.792 NA NA

Total matches= 30 (27 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 699 (22.42%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr20g0122851)
Mean nb of predicted sites per peak: 1.16

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 22 oligos_8nt_test_vs_ctrl_m2

k-mer sig=137.04; evalue=9.1e-138

sccaAAACCCTArcyc

GRGYTAGGGTTTTGGS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sccaAAACCCTArcyc

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 15 0.9375 0.906 0.849 NA NA

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR D 15 0.9375 0.837 0.785 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 14 0.8235 0.932 0.768 NA NA

Total matches= 30 (27 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 707 (22.67%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr20g0122851)
Mean nb of predicted sites per peak: 1.16

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 23 oligos_8nt_test_vs_ctrl_m3

k-mer sig=137.04; evalue=9.1e-138

grrrtTaGGGTTTarggk

MCCYTAAACCCTAAYYYC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor grrrtTaGGGTTTarggk

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR R 18 0.9474 0.915 0.867 NA NA

TBP3.ampDAP:M0621:AthalianaCistrome TBP3.ampDAP/M0621/AthalianaCistrome D 17 0.8500 0.947 0.805 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 15 0.8333 0.963 0.803 NA NA

Total matches= 28 (25 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 885 (28.38%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr24g0399901)
Mean nb of predicted sites per peak: 1.23

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 24 oligos_8nt_test_vs_ctrl_m4

k-mer sig=28.28; evalue=5.2e-29

gvaaaaGCCCAatavr

YBTATTGGGCTTTTBC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gvaaaaGCCCAatavr

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 15 0.9375 0.839 0.787 NA NA

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 15 0.9375 0.824 0.772 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.5625 0.869 0.489 NA NA

Total matches= 11 (8 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 369 (11.83%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr23g0270581)
Mean nb of predicted sites per peak: 1.19

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 25 oligos_8nt_test_vs_ctrl_m5

k-mer sig=24.77; evalue=1.7e-25

gytaGGCCCAaatsr

YSATTTGGGCCTARC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gytaGGCCCAaatsr

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 15 1.0000 0.927 0.927 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 15 1.0000 0.871 0.871 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.6000 0.950 0.570 NA NA

Total matches= 3

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 385 (12.35%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr19g0138401)
Mean nb of predicted sites per peak: 1.21

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 26 oligos_8nt_test_vs_ctrl_m6

k-mer sig=24.66; evalue=2.2e-25

rrttttGGCGGGaaaakr

YMTTTTCCCGCCAAAAYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrttttGGCGGGaaaakr

E2FD:MA1732.1:JASPAR E2FD/MA1732.1/JASPAR D 15 0.8333 0.978 0.815 NA NA

DEL2.ampDAP:M0366:AthalianaCistrome DEL2.ampDAP/M0366/AthalianaCistrome D 15 0.8333 0.978 0.815 NA NA

DEL1.ampDAP:M0365:AthalianaCistrome DEL1.ampDAP/M0365/AthalianaCistrome D 15 0.8333 0.977 0.814 NA NA

Total matches= 14 (11 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 456 (14.62%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr24g0399901)
Mean nb of predicted sites per peak: 1.17

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 27 oligos_8nt_test_vs_ctrl_m7

k-mer sig=23.56; evalue=2.8e-24

krmtCCaACGGCtaCgk

MCGTAGCCGTTGGAKYM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor krmtCCaACGGCtaCgk

MYB3R3:EEAD0045:EEADannot MYB3R3/EEAD0045/EEADannot R 14 0.8235 0.822 0.677 NA NA

ZIM.DAP:M0290:AthalianaCistrome ZIM.DAP/M0290/AthalianaCistrome R 15 0.8824 0.742 0.654 NA NA

MYB3R4:MA1180.2:JASPAR MYB3R4/MA1180.2/JASPAR R 12 0.7059 0.856 0.605 NA NA

Total matches= 17 (14 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 365 (11.71%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr12g0199901)
Mean nb of predicted sites per peak: 1.16

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 28 oligos_8nt_test_vs_ctrl_m8

k-mer sig=137.04; evalue=9.1e-138

grrrtTaGGGTTTskgk

MCMSAAACCCTAAYYYC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor grrrtTaGGGTTTskgk

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 15 0.8824 0.966 0.852 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 15 0.8824 0.938 0.828 NA NA

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR R 17 0.8947 0.907 0.812 NA NA

Total matches= 28 (25 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 872 (27.97%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr24g0399901)
Mean nb of predicted sites per peak: 1.24

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 29 oligos_8nt_test_vs_ctrl_m9

k-mer sig=137.04; evalue=9.1e-138

grrrtTaGGGTTTtrggk

MCCYAAAACCCTAAYYYC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor grrrtTaGGGTTTtrggk

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR R 18 0.9474 0.886 0.840 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 15 0.8333 0.948 0.790 NA NA

TBP3.ampDAP:M0621:AthalianaCistrome TBP3.ampDAP/M0621/AthalianaCistrome D 17 0.8500 0.919 0.782 NA NA

Total matches= 25 (22 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 869 (27.87%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr24g0399901)
Mean nb of predicted sites per peak: 1.23

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 30 oligos_8nt_test_vs_ctrl_m10

k-mer sig=137.04; evalue=9.1e-138

cccaAAACCCtAacycc

GGRGTTAGGGTTTTGGG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cccaAAACCCtAacycc

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 15 0.8824 0.957 0.844 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 15 0.8824 0.936 0.826 NA NA

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR D 17 0.8947 0.866 0.775 NA NA

Total matches= 32 (29 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 729 (23.38%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr24g0399901)
Mean nb of predicted sites per peak: 1.18

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 31 dyads_test_vs_ctrl_m1

k-mer sig=114.87; evalue=1.3e-115

msaaAAACCCTaayyy

RRRTTAGGGTTTTTSK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor msaaAAACCCTaayyy

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 15 0.9375 0.915 0.858 NA NA

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR D 15 0.9375 0.877 0.822 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 14 0.8235 0.950 0.782 NA NA

Total matches= 34 (31 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 714 (22.90%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr20g0122851)
Mean nb of predicted sites per peak: 1.16

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 32 dyads_test_vs_ctrl_m2

k-mer sig=61.82; evalue=1.5e-62

ytaGGCCCAaatsr

YSATTTGGGCCTAR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ytaGGCCCAaatsr

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 14 0.9333 0.945 0.882 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 14 0.9333 0.899 0.839 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR D 9 0.6429 0.961 0.618 NA NA

Total matches= 7 (4 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 446 (14.30%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr19g0138401)
Mean nb of predicted sites per peak: 1.23

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 33 dyads_test_vs_ctrl_m3

k-mer sig=82.11; evalue=7.8e-83

ssaaAAGCCCaaatsr

YSATTTGGGCTTTTSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssaaAAGCCCaaatsr

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot R 15 0.9375 0.794 0.744 NA NA

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR D 15 0.9375 0.755 0.708 NA NA

TRB2:MA1355.2:JASPAR TRB2/MA1355.2/JASPAR D 11 0.6875 0.737 0.506 NA NA

Total matches= 14 (11 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 382 (12.25%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr24g0402931)
Mean nb of predicted sites per peak: 1.15

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 34 dyads_test_vs_ctrl_m4

k-mer sig=34.05; evalue=8.9e-35

bcttttCCCGCCathd

HDATGGCGGGAAAAGV

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor bcttttCCCGCCathd

E2FD:UN0361.1:JASPAR E2FD/UN0361.1/JASPAR R 15 0.8824 0.909 0.802 NA NA

E2FD:MA1732.1:JASPAR E2FD/MA1732.1/JASPAR R 14 0.8235 0.885 0.729 NA NA

DEL2.ampDAP:M0366:AthalianaCistrome DEL2.ampDAP/M0366/AthalianaCistrome R 14 0.8235 0.885 0.729 NA NA

Total matches= 16 (13 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 349 (11.19%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr24g0399901)
Mean nb of predicted sites per peak: 1.13

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 35 dyads_test_vs_ctrl_m5

k-mer sig=114.87; evalue=1.3e-115

ktGGGGyTTagg

CCTAARCCCCAM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ktGGGGyTTagg

TRP5:MA1802.1:JASPAR TRP5/MA1802.1/JASPAR R 10 0.8333 0.925 0.771 NA NA

XM_002876896.1:M1282_1.02:CISBP XM_002876896.1/M1282_1.02/CISBP R 12 0.9231 0.777 0.717 NA NA

AT1G76870:MA1367.1:JASPAR AT1G76870/MA1367.1/JASPAR R 12 0.8571 0.747 0.641 NA NA

Total matches= 22 (19 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 586 (18.79%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr20g0122851)
Mean nb of predicted sites per peak: 1.18

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 36 dyads_test_vs_ctrl_m6

k-mer sig=26.06; evalue=8.7e-27

myCCaACGGCtacg

CGTAGCCGTTGGRK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor myCCaACGGCtacg

MYB3R3:EEAD0045:EEADannot MYB3R3/EEAD0045/EEADannot R 14 1.0000 0.808 0.808 NA NA

ZIM.DAP:M0290:AthalianaCistrome ZIM.DAP/M0290/AthalianaCistrome R 14 0.9333 0.769 0.717 NA NA

MYB3R4:MA1180.2:JASPAR MYB3R4/MA1180.2/JASPAR R 11 0.7333 0.865 0.634 NA NA

Total matches= 23 (20 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 370 (11.87%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr12g0199901)
Mean nb of predicted sites per peak: 1.19

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 37 dyads_test_vs_ctrl_m7

k-mer sig=61.82; evalue=1.5e-62

kdaaTGGGCCtkr

YMAGGCCCATTHM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kdaaTGGGCCtkr

ASR1:MA1812.1:JASPAR ASR1/MA1812.1/JASPAR R 13 0.8667 0.960 0.832 NA NA

TZP2:EEAD0062:EEADannot TZP2/EEAD0062/EEADannot D 13 0.8667 0.951 0.824 NA NA

ASR1:MA1812.2:JASPAR ASR1/MA1812.2/JASPAR R 9 0.6923 0.966 0.669 NA NA

Total matches= 14 (11 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 571 (18.31%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr02g0152301)
Mean nb of predicted sites per peak: 1.30

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 38 dyads_test_vs_ctrl_m8

k-mer sig=114.87; evalue=1.3e-115

scaaAAACCCTaryy

RRYTAGGGTTTTTGS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor scaaAAACCCTaryy

TBP3:MA1355.1:JASPAR TBP3/MA1355.1/JASPAR D 15 1.0000 0.845 0.845 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR D 14 0.8750 0.902 0.789 NA NA

AT1G72740:MA1353.1:JASPAR AT1G72740/MA1353.1/JASPAR R 13 0.7647 0.931 0.712 NA NA

Total matches= 30 (27 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 699 (22.42%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr20g0122851)
Mean nb of predicted sites per peak: 1.16

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 39 dyads_test_vs_ctrl_m9

k-mer sig=23.91; evalue=1.2e-24

mbCCaACGGtbr

YVACCGTTGGVK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mbCCaACGGtbr

MYB3R1:MA1178.2:JASPAR MYB3R1/MA1178.2/JASPAR D 12 0.9231 0.868 0.801 NA NA

PC-MYB1:MA2352.1:JASPAR PC-MYB1/MA2352.1/JASPAR R 9 0.7500 0.923 0.693 NA NA

ZIM.DAP:M0290:AthalianaCistrome ZIM.DAP/M0290/AthalianaCistrome R 12 0.8000 0.856 0.685 NA NA

Total matches= 65 (62 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 393 (12.60%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr07g0192961)
Mean nb of predicted sites per peak: 1.17

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 40 dyads_test_vs_ctrl_m10

k-mer sig=34.05; evalue=8.9e-35

scytytCCCGCCGCCrybg

CVRYGGCGGCGGGARARGS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor scytytCCCGCCGCCrybg

ERF4.ampDAP:M0033:AthalianaCistrome ERF4.ampDAP/M0033/AthalianaCistrome R 18 0.8571 0.843 0.722 NA NA

ERF11.ampDAP:M0072:AthalianaCistrome ERF11.ampDAP/M0072/AthalianaCistrome R 18 0.8571 0.834 0.715 NA NA

ERF8.ampDAP:M0046:AthalianaCistrome ERF8.ampDAP/M0046/AthalianaCistrome R 17 0.8500 0.836 0.711 NA NA

Total matches= 163 (160 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 439 (14.08%)
Max nb of predicted sites per peak: 10
(gene-Lalb_Chr22g0359191)
Mean nb of predicted sites per peak: 1.88

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]
Discovered motifs versus transcription factor databases
Motifs versus footprintDB-plants database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: MEblack_Up3_W2 (26/05/2025 08:33)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results