; 2025-05-26.081611
peak-motifs  -v 1 -title MEblack_Up3_W3 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/peak-motifspeak_seq -ctrl $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/peak-motifscontrol_seq -markov auto -disco oligos,dyads,positions -nmotifs 10 -minol 6 -maxol 8 -no_merge_lengths -2str -origin center -offset 200 -motif_db footprintDB-plants tf $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv



; 2025-05-26.081611
rsync -ruptl $RSAT/perl-scripts/lib/images/arrow*.gif $RSAT/perl-scripts/lib/images/UCSC_icon.jpg  $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/images_html


; 2025-05-26.081611
$RSAT/perl-scripts/convert-seq -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/peak-motifspeak_seq -from fasta -to fasta -mask non-dna -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test.fasta


; 2025-05-26.081612
$RSAT/perl-scripts/purge-sequence -dna -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test.fasta -ml 40 -mis 3 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test_purged_ml40_mis3.fasta


; 2025-05-26.081614
$RSAT/perl-scripts/sequence-lengths -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test_purged_ml40_mis3.fasta -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test_seqlen.tab ; $RSAT/perl-scripts/classfreq -v 1 -col 2 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test_seqlen.tab -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test_seqlen_distrib.tab


; 2025-05-26.081614
$RSAT/perl-scripts/XYgraph -lines -pointsize 0 -format png -title 'Peak lengths; MEblack_Up3_W3' -xsize 700 -xcol 3 -xleg1 'Peak length' -ysize 250 -ycol 4 -yleg1 'Number of peaks' -xmin 0 -ymin 0 -xgstep2 20 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test_seqlen_distrib.tab -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test_seqlen_distrib.png


; 2025-05-26.081614
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_freq-1str-ovlp_1nt.tab_time.txt $RSAT/bin/count-words -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test_purged_ml40_mis3.fasta -l 1 -1str -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_freq-1str-ovlp_1nt.tab


; 2025-05-26.081614
$RSAT/perl-scripts/convert-background-model -from oligos -to inclusive  -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_freq-1str-ovlp_1nt.tab -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_1nt.txt; $RSAT/perl-scripts/convert-background-model -from oligos -to transitions  -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_freq-1str-ovlp_1nt.tab -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_transitions-1str-ovlp_1nt.tab ; cut -f 1-5,7 $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_transitions-1str-ovlp_1nt.tab | $RSAT/perl-scripts/draw-heatmap -min 0 -max 1 -digits 3 -out_format png -col_width 50 -rownames -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_heatmap-1str-ovlp_1nt.png


; 2025-05-26.081614
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_freq-1str-ovlp_2nt.tab_time.txt $RSAT/bin/count-words -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test_purged_ml40_mis3.fasta -l 2 -1str -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_freq-1str-ovlp_2nt.tab


; 2025-05-26.081614
$RSAT/perl-scripts/convert-background-model -from oligos -to inclusive  -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_freq-1str-ovlp_2nt.tab -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt; $RSAT/perl-scripts/convert-background-model -from oligos -to transitions  -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_freq-1str-ovlp_2nt.tab -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_transitions-1str-ovlp_2nt.tab ; cut -f 1-5,7 $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_transitions-1str-ovlp_2nt.tab | $RSAT/perl-scripts/draw-heatmap -min 0 -max 1 -digits 3 -out_format png -col_width 50 -rownames -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_heatmap-1str-ovlp_2nt.png


; 2025-05-26.081615
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab_time.txt $RSAT/perl-scripts/position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test_purged_ml40_mis3.fasta -format fasta -sort  -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title 'MEblack_Up3_W3' -origin center -offset 200 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab


; 2025-05-26.081623
grep -v ";" $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab | cut -f 1,10-10000 | $RSAT/perl-scripts/transpose-table | $RSAT/perl-scripts/XYgraph -xcol 1 -ycol 2-5 -xgstep2 20 -vline '#666666' 0 -xsize 700 -ysize 250 -format png -legend -lines -pointsize 0 -legend -header -colors $RSAT/perl-scripts/lib/color_palettes/1nt-1str_colors.tab -title 'Nucleotide composition profiles; test sequence; MEblack_Up3_W3' -xleg1 'Position' -xsize 700 -yleg1 'Occurrences' -ysize 250  -ymin 0 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.png


; 2025-05-26.081623
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab_time.txt $RSAT/perl-scripts/position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test_purged_ml40_mis3.fasta -format fasta -sort  -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title 'MEblack_Up3_W3' -origin center -offset 200 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab


; 2025-05-26.081633
grep -v ";" $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab | cut -f 1,10-10000 | $RSAT/perl-scripts/transpose-table | $RSAT/perl-scripts/XYgraph -xcol 1 -ycol 2-17 -xgstep2 20 -vline '#666666' 0 -xsize 700 -ysize 250 -format png -legend -lines -pointsize 0 -legend -header -colors $RSAT/perl-scripts/lib/color_palettes/2nt-1str_colors.tab -title 'Dinucleotide composition profiles; test sequence; MEblack_Up3_W3' -xleg1 'Position' -xsize 700 -yleg1 'Occurrences' -ysize 250  -ymin 0 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.png


; 2025-05-26.081633
$RSAT/perl-scripts/convert-seq -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/peak-motifscontrol_seq -from fasta -to fasta -mask non-dna -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_ctrl.fasta


; 2025-05-26.081636
$RSAT/perl-scripts/purge-sequence -dna -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_ctrl.fasta -ml 40 -mis 3 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_ctrl_purged_ml40_mis3.fasta


; 2025-05-26.082343
$RSAT/perl-scripts/sequence-lengths -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_ctrl_purged_ml40_mis3.fasta -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_ctrl_seqlen.tab ; $RSAT/perl-scripts/classfreq -v 1 -col 2 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_ctrl_seqlen.tab -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_ctrl_seqlen_distrib.tab


; 2025-05-26.082344
$RSAT/perl-scripts/XYgraph -lines -pointsize 0 -format png -title 'Peak lengths; MEblack_Up3_W3' -xsize 700 -xcol 3 -xleg1 'Peak length' -ysize 250 -ycol 4 -yleg1 'Number of peaks' -xmin 0 -ymin 0 -xgstep2 20 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_ctrl_seqlen_distrib.tab -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_ctrl_seqlen_distrib.png


; 2025-05-26.082344
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_freq-1str-ovlp_1nt.tab_time.txt $RSAT/bin/count-words -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_ctrl_purged_ml40_mis3.fasta -l 1 -1str -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_freq-1str-ovlp_1nt.tab


; 2025-05-26.082345
$RSAT/perl-scripts/convert-background-model -from oligos -to inclusive  -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_freq-1str-ovlp_1nt.tab -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_inclusive-1str-ovlp_1nt.txt; $RSAT/perl-scripts/convert-background-model -from oligos -to transitions  -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_freq-1str-ovlp_1nt.tab -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_transitions-1str-ovlp_1nt.tab ; cut -f 1-5,7 $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_transitions-1str-ovlp_1nt.tab | $RSAT/perl-scripts/draw-heatmap -min 0 -max 1 -digits 3 -out_format png -col_width 50 -rownames -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_heatmap-1str-ovlp_1nt.png


; 2025-05-26.082345
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_freq-1str-ovlp_2nt.tab_time.txt $RSAT/bin/count-words -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_ctrl_purged_ml40_mis3.fasta -l 2 -1str -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_freq-1str-ovlp_2nt.tab


; 2025-05-26.082346
$RSAT/perl-scripts/convert-background-model -from oligos -to inclusive  -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_freq-1str-ovlp_2nt.tab -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_inclusive-1str-ovlp_2nt.txt; $RSAT/perl-scripts/convert-background-model -from oligos -to transitions  -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_freq-1str-ovlp_2nt.tab -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_transitions-1str-ovlp_2nt.tab ; cut -f 1-5,7 $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_transitions-1str-ovlp_2nt.tab | $RSAT/perl-scripts/draw-heatmap -min 0 -max 1 -digits 3 -out_format png -col_width 50 -rownames -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_heatmap-1str-ovlp_2nt.png


; 2025-05-26.082346
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_1nt_ci20.tab_time.txt $RSAT/perl-scripts/position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_ctrl_purged_ml40_mis3.fasta -format fasta -sort  -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 1 -ci 20 -img_format png -title 'MEblack_Up3_W3' -origin center -offset 200 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_1nt_ci20.tab


; 2025-05-26.082604
grep -v ";" $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_1nt_ci20.tab | cut -f 1,10-10000 | $RSAT/perl-scripts/transpose-table | $RSAT/perl-scripts/XYgraph -xcol 1 -ycol 2-5 -xgstep2 20 -vline '#666666' 0 -xsize 700 -ysize 250 -format png -legend -lines -pointsize 0 -legend -header -colors $RSAT/perl-scripts/lib/color_palettes/1nt-1str_colors.tab -title 'Nucleotide composition profiles; ctrl sequence; MEblack_Up3_W3' -xleg1 'Position' -xsize 700 -yleg1 'Occurrences' -ysize 250  -ymin 0 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_1nt_ci20.png


; 2025-05-26.082604
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_2nt_ci20.tab_time.txt $RSAT/perl-scripts/position-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_ctrl_purged_ml40_mis3.fasta -format fasta -sort  -return html,chi,sig,distrib,graphs,rank,index -max_graphs 20 -1str -ovlp -seqtype dna -l 2 -ci 20 -img_format png -title 'MEblack_Up3_W3' -origin center -offset 200 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_2nt_ci20.tab


; 2025-05-26.082848
grep -v ";" $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_2nt_ci20.tab | cut -f 1,10-10000 | $RSAT/perl-scripts/transpose-table | $RSAT/perl-scripts/XYgraph -xcol 1 -ycol 2-17 -xgstep2 20 -vline '#666666' 0 -xsize 700 -ysize 250 -format png -legend -lines -pointsize 0 -legend -header -colors $RSAT/perl-scripts/lib/color_palettes/2nt-1str_colors.tab -title 'Dinucleotide composition profiles; ctrl sequence; MEblack_Up3_W3' -xleg1 'Position' -xsize 700 -yleg1 'Occurrences' -ysize 250  -ymin 0 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_2nt_ci20.png


; 2025-05-26.082848
$RSAT/perl-scripts/oligo-analysis -v 1 -quick -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_ctrl_purged_ml40_mis3.fasta -format fasta -return occ,freq -2str -noov -seqtype dna -l 6 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_6nt_test_vs_ctrl/peak-motifs_oligos_bg_from_ctrl_6nt-2str-noov.tab


; 2025-05-26.082851
$RSAT/perl-scripts/oligo-analysis -v 1 -quick -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_ctrl_purged_ml40_mis3.fasta -format fasta -return occ,freq -2str -noov -seqtype dna -l 7 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_7nt_test_vs_ctrl/peak-motifs_oligos_bg_from_ctrl_7nt-2str-noov.tab


; 2025-05-26.082855
$RSAT/perl-scripts/oligo-analysis -v 1 -quick -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_ctrl_purged_ml40_mis3.fasta -format fasta -return occ,freq -2str -noov -seqtype dna -l 8 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_8nt_test_vs_ctrl/peak-motifs_oligos_bg_from_ctrl_8nt-2str-noov.tab


; 2025-05-26.082903
$RSAT/perl-scripts/dyad-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_ctrl_purged_ml40_mis3.fasta -quick -format fasta -return occ,freq -2str -noov -seqtype dna -l 3 -sp 0-20  -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/dyads_test_vs_ctrl/peak-motifs_dyads_bg_from_ctrl-2str-noov_3nt_sp0-20_bg_monads.tab


; 2025-05-26.082946
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_6nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_6nt_test_vs_ctrl.tab_time.txt $RSAT/perl-scripts/oligo-analysis -v 1 -quick -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test_purged_ml40_mis3.fasta -format fasta -sort -lth ratio 1 -lth occ_sig 0 -uth rank 100 -return occ,proba,rank -2str -noov -seqtype dna -l 6 -expfreq $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_6nt_test_vs_ctrl/peak-motifs_oligos_bg_from_ctrl_6nt-2str-noov.tab -pseudo 0.01 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_6nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_6nt_test_vs_ctrl.tab


; 2025-05-26.082947
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_6nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_6nt_test_vs_ctrl_pssm_time.txt $RSAT/perl-scripts/matrix-from-patterns -v 1  -sites -seq $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test.fasta -pl $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_6nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_6nt_test_vs_ctrl.tab -bgfile $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -toppat 100 -max_asmb_nb 10 -max_asmb_width 20 -subst 1 -prefix oligos_6nt_test_vs_ctrl -flanks 2 -collect_method matrix-scan-quick -logo -cluster none -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_6nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_6nt_test_vs_ctrl_pssm


; 2025-05-26.083002
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_7nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_7nt_test_vs_ctrl.tab_time.txt $RSAT/perl-scripts/oligo-analysis -v 1 -quick -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test_purged_ml40_mis3.fasta -format fasta -sort -lth ratio 1 -lth occ_sig 0 -uth rank 100 -return occ,proba,rank -2str -noov -seqtype dna -l 7 -expfreq $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_7nt_test_vs_ctrl/peak-motifs_oligos_bg_from_ctrl_7nt-2str-noov.tab -pseudo 0.01 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_7nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_7nt_test_vs_ctrl.tab


; 2025-05-26.083003
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_7nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_7nt_test_vs_ctrl_pssm_time.txt $RSAT/perl-scripts/matrix-from-patterns -v 1  -sites -seq $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test.fasta -pl $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_7nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_7nt_test_vs_ctrl.tab -bgfile $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -toppat 100 -max_asmb_nb 10 -max_asmb_width 20 -subst 1 -prefix oligos_7nt_test_vs_ctrl -flanks 2 -collect_method matrix-scan-quick -logo -cluster none -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_7nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_7nt_test_vs_ctrl_pssm


; 2025-05-26.083019
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_8nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_8nt_test_vs_ctrl.tab_time.txt $RSAT/perl-scripts/oligo-analysis -v 1 -quick -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test_purged_ml40_mis3.fasta -format fasta -sort -lth ratio 1 -lth occ_sig 0 -uth rank 100 -return occ,proba,rank -2str -noov -seqtype dna -l 8 -expfreq $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_8nt_test_vs_ctrl/peak-motifs_oligos_bg_from_ctrl_8nt-2str-noov.tab -pseudo 0.01 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_8nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_8nt_test_vs_ctrl.tab


; 2025-05-26.083023
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_8nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_8nt_test_vs_ctrl_pssm_time.txt $RSAT/perl-scripts/matrix-from-patterns -v 1  -sites -seq $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test.fasta -pl $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_8nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_8nt_test_vs_ctrl.tab -bgfile $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -toppat 100 -max_asmb_nb 10 -max_asmb_width 20 -subst 1 -prefix oligos_8nt_test_vs_ctrl -flanks 2 -collect_method matrix-scan-quick -logo -cluster none -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_8nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_8nt_test_vs_ctrl_pssm


; 2025-05-26.083039
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/dyads_test_vs_ctrl/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads.tab_time.txt $RSAT/perl-scripts/dyad-analysis -v 1 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test_purged_ml40_mis3.fasta -quick -format fasta -sort -lth ratio 1 -lth occ_sig 0 -uth rank 100 -return occ,proba,ratio,zscore,rank -2str -noov -seqtype dna -l 3 -sp 0-20  -expfreq $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/dyads_test_vs_ctrl/peak-motifs_dyads_bg_from_ctrl-2str-noov_3nt_sp0-20_bg_monads.tab -pseudo 0.01 | perl -pe 's/n\{0\}//g' >$RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/dyads_test_vs_ctrl/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads.tab


; 2025-05-26.083049
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/dyads_test_vs_ctrl/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_time.txt $RSAT/perl-scripts/matrix-from-patterns -v 1  -sites -seq $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test.fasta -pl $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/dyads_test_vs_ctrl/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads.tab -bgfile $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt -toppat 100 -max_asmb_nb 10 -max_asmb_width 20 -subst 1 -prefix dyads_test_vs_ctrl -flanks 2 -collect_method matrix-scan-quick -logo -cluster none -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/dyads_test_vs_ctrl/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm


; 2025-05-26.083106
rm -f $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/peak-motifs_motifs_discovered.tf; cat $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_6nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_6nt_test_vs_ctrl_pssm_count_matrices.tf >> $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/peak-motifs_motifs_discovered.tf; cat $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_7nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_7nt_test_vs_ctrl_pssm_count_matrices.tf >> $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/peak-motifs_motifs_discovered.tf; cat $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_8nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_8nt_test_vs_ctrl_pssm_count_matrices.tf >> $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/peak-motifs_motifs_discovered.tf; cat $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/dyads_test_vs_ctrl/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_count_matrices.tf >> $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/peak-motifs_motifs_discovered.tf


; 2025-05-26.083106
$RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m1/peak-motifs_oligos_6nt_test_vs_ctrl_m1.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m1/peak-motifs_oligos_6nt_test_vs_ctrl_m1.tab


; 2025-05-26.083106
$RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m2/peak-motifs_oligos_6nt_test_vs_ctrl_m2.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m2/peak-motifs_oligos_6nt_test_vs_ctrl_m2.tab


; 2025-05-26.083106
$RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m3/peak-motifs_oligos_6nt_test_vs_ctrl_m3.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m3/peak-motifs_oligos_6nt_test_vs_ctrl_m3.tab


; 2025-05-26.083107
$RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m4/peak-motifs_oligos_6nt_test_vs_ctrl_m4.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m4/peak-motifs_oligos_6nt_test_vs_ctrl_m4.tab


; 2025-05-26.083107
$RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m5/peak-motifs_oligos_6nt_test_vs_ctrl_m5.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m5/peak-motifs_oligos_6nt_test_vs_ctrl_m5.tab


; 2025-05-26.083107
$RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m6/peak-motifs_oligos_6nt_test_vs_ctrl_m6.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m6/peak-motifs_oligos_6nt_test_vs_ctrl_m6.tab


; 2025-05-26.083107
$RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m7/peak-motifs_oligos_6nt_test_vs_ctrl_m7.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m7/peak-motifs_oligos_6nt_test_vs_ctrl_m7.tab


; 2025-05-26.083107
$RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m8/peak-motifs_oligos_6nt_test_vs_ctrl_m8.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m8/peak-motifs_oligos_6nt_test_vs_ctrl_m8.tab


; 2025-05-26.083107
$RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m9/peak-motifs_oligos_6nt_test_vs_ctrl_m9.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m9/peak-motifs_oligos_6nt_test_vs_ctrl_m9.tab


; 2025-05-26.083107
$RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m10/peak-motifs_oligos_6nt_test_vs_ctrl_m10.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m10/peak-motifs_oligos_6nt_test_vs_ctrl_m10.tab


; 2025-05-26.083108
$RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m1/peak-motifs_oligos_7nt_test_vs_ctrl_m1.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m1/peak-motifs_oligos_7nt_test_vs_ctrl_m1.tab


; 2025-05-26.083108
$RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m2/peak-motifs_oligos_7nt_test_vs_ctrl_m2.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m2/peak-motifs_oligos_7nt_test_vs_ctrl_m2.tab


; 2025-05-26.083108
$RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m3/peak-motifs_oligos_7nt_test_vs_ctrl_m3.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m3/peak-motifs_oligos_7nt_test_vs_ctrl_m3.tab


; 2025-05-26.083108
$RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m4/peak-motifs_oligos_7nt_test_vs_ctrl_m4.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m4/peak-motifs_oligos_7nt_test_vs_ctrl_m4.tab


; 2025-05-26.083108
$RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m5/peak-motifs_oligos_7nt_test_vs_ctrl_m5.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m5/peak-motifs_oligos_7nt_test_vs_ctrl_m5.tab


; 2025-05-26.083108
$RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m6/peak-motifs_oligos_7nt_test_vs_ctrl_m6.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m6/peak-motifs_oligos_7nt_test_vs_ctrl_m6.tab


; 2025-05-26.083109
$RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m7/peak-motifs_oligos_7nt_test_vs_ctrl_m7.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m7/peak-motifs_oligos_7nt_test_vs_ctrl_m7.tab


; 2025-05-26.083109
$RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m8/peak-motifs_oligos_7nt_test_vs_ctrl_m8.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m8/peak-motifs_oligos_7nt_test_vs_ctrl_m8.tab


; 2025-05-26.083109
$RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m9/peak-motifs_oligos_7nt_test_vs_ctrl_m9.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m9/peak-motifs_oligos_7nt_test_vs_ctrl_m9.tab


; 2025-05-26.083109
$RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m10/peak-motifs_oligos_7nt_test_vs_ctrl_m10.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m10/peak-motifs_oligos_7nt_test_vs_ctrl_m10.tab


; 2025-05-26.083109
$RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m1/peak-motifs_oligos_8nt_test_vs_ctrl_m1.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m1/peak-motifs_oligos_8nt_test_vs_ctrl_m1.tab


; 2025-05-26.083109
$RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m2/peak-motifs_oligos_8nt_test_vs_ctrl_m2.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m2/peak-motifs_oligos_8nt_test_vs_ctrl_m2.tab


; 2025-05-26.083110
$RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m3/peak-motifs_oligos_8nt_test_vs_ctrl_m3.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m3/peak-motifs_oligos_8nt_test_vs_ctrl_m3.tab


; 2025-05-26.083110
$RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m4/peak-motifs_oligos_8nt_test_vs_ctrl_m4.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m4/peak-motifs_oligos_8nt_test_vs_ctrl_m4.tab


; 2025-05-26.083110
$RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m5/peak-motifs_oligos_8nt_test_vs_ctrl_m5.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m5/peak-motifs_oligos_8nt_test_vs_ctrl_m5.tab


; 2025-05-26.083110
$RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m6/peak-motifs_oligos_8nt_test_vs_ctrl_m6.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m6/peak-motifs_oligos_8nt_test_vs_ctrl_m6.tab


; 2025-05-26.083110
$RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m7/peak-motifs_oligos_8nt_test_vs_ctrl_m7.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m7/peak-motifs_oligos_8nt_test_vs_ctrl_m7.tab


; 2025-05-26.083110
$RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m8/peak-motifs_oligos_8nt_test_vs_ctrl_m8.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m8/peak-motifs_oligos_8nt_test_vs_ctrl_m8.tab


; 2025-05-26.083110
$RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m9/peak-motifs_oligos_8nt_test_vs_ctrl_m9.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m9/peak-motifs_oligos_8nt_test_vs_ctrl_m9.tab


; 2025-05-26.083111
$RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m10/peak-motifs_oligos_8nt_test_vs_ctrl_m10.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m10/peak-motifs_oligos_8nt_test_vs_ctrl_m10.tab


; 2025-05-26.083111
$RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m1/peak-motifs_dyads_test_vs_ctrl_m1.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m1/peak-motifs_dyads_test_vs_ctrl_m1.tab


; 2025-05-26.083111
$RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2.tab


; 2025-05-26.083111
$RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m3/peak-motifs_dyads_test_vs_ctrl_m3.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m3/peak-motifs_dyads_test_vs_ctrl_m3.tab


; 2025-05-26.083111
$RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4.tab


; 2025-05-26.083111
$RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m5/peak-motifs_dyads_test_vs_ctrl_m5.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m5/peak-motifs_dyads_test_vs_ctrl_m5.tab


; 2025-05-26.083112
$RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m6/peak-motifs_dyads_test_vs_ctrl_m6.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m6/peak-motifs_dyads_test_vs_ctrl_m6.tab


; 2025-05-26.083112
$RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m7/peak-motifs_dyads_test_vs_ctrl_m7.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m7/peak-motifs_dyads_test_vs_ctrl_m7.tab


; 2025-05-26.083112
$RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m8/peak-motifs_dyads_test_vs_ctrl_m8.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m8/peak-motifs_dyads_test_vs_ctrl_m8.tab


; 2025-05-26.083112
$RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m9/peak-motifs_dyads_test_vs_ctrl_m9.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m9/peak-motifs_dyads_test_vs_ctrl_m9.tab


; 2025-05-26.083112
$RSAT/perl-scripts/convert-matrix -v 0 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m10/peak-motifs_dyads_test_vs_ctrl_m10.tf -from transfac -to tab -return counts -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m10/peak-motifs_dyads_test_vs_ctrl_m10.tab


; 2025-05-26.083112
$RSAT/perl-scripts/compare-matrices -v 1 -format transfac -file $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/peak-motifs_motifs_discovered.tf -distinct -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab; $RSAT/perl-scripts/text-to-html -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/peak-motifs_motifs_disco_compa.html


; 2025-05-26.083250
$RSAT/perl-scripts/convert-graph -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/peak-motifs_motifs_disco_compa.tab -ewidth -ecolors fire -layout spring -from tab -to gml -scol 3 -tcol 4 -wcol 5 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/peak-motifs_motifs_disco_compa.gml


; 2025-05-26.083253
$RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m1/peak-motifs_oligos_6nt_test_vs_ctrl_m1.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m1/peak-motifs_oligos_6nt_test_vs_ctrl_m1_vs_db_footprintDB-plants


; 2025-05-26.083255
$RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m2/peak-motifs_oligos_6nt_test_vs_ctrl_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m2/peak-motifs_oligos_6nt_test_vs_ctrl_m2_vs_db_footprintDB-plants


; 2025-05-26.083257
$RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m3/peak-motifs_oligos_6nt_test_vs_ctrl_m3.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m3/peak-motifs_oligos_6nt_test_vs_ctrl_m3_vs_db_footprintDB-plants


; 2025-05-26.083258
$RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m4/peak-motifs_oligos_6nt_test_vs_ctrl_m4.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m4/peak-motifs_oligos_6nt_test_vs_ctrl_m4_vs_db_footprintDB-plants


; 2025-05-26.083300
$RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m5/peak-motifs_oligos_6nt_test_vs_ctrl_m5.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m5/peak-motifs_oligos_6nt_test_vs_ctrl_m5_vs_db_footprintDB-plants


; 2025-05-26.083302
$RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m6/peak-motifs_oligos_6nt_test_vs_ctrl_m6.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m6/peak-motifs_oligos_6nt_test_vs_ctrl_m6_vs_db_footprintDB-plants


; 2025-05-26.083304
$RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m7/peak-motifs_oligos_6nt_test_vs_ctrl_m7.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m7/peak-motifs_oligos_6nt_test_vs_ctrl_m7_vs_db_footprintDB-plants


; 2025-05-26.083306
$RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m8/peak-motifs_oligos_6nt_test_vs_ctrl_m8.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m8/peak-motifs_oligos_6nt_test_vs_ctrl_m8_vs_db_footprintDB-plants


; 2025-05-26.083308
$RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m9/peak-motifs_oligos_6nt_test_vs_ctrl_m9.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m9/peak-motifs_oligos_6nt_test_vs_ctrl_m9_vs_db_footprintDB-plants


; 2025-05-26.083310
$RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m10/peak-motifs_oligos_6nt_test_vs_ctrl_m10.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m10/peak-motifs_oligos_6nt_test_vs_ctrl_m10_vs_db_footprintDB-plants


; 2025-05-26.083312
$RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m1/peak-motifs_oligos_7nt_test_vs_ctrl_m1.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m1/peak-motifs_oligos_7nt_test_vs_ctrl_m1_vs_db_footprintDB-plants


; 2025-05-26.083314
$RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m2/peak-motifs_oligos_7nt_test_vs_ctrl_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m2/peak-motifs_oligos_7nt_test_vs_ctrl_m2_vs_db_footprintDB-plants


; 2025-05-26.083316
$RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m3/peak-motifs_oligos_7nt_test_vs_ctrl_m3.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m3/peak-motifs_oligos_7nt_test_vs_ctrl_m3_vs_db_footprintDB-plants


; 2025-05-26.083318
$RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m4/peak-motifs_oligos_7nt_test_vs_ctrl_m4.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m4/peak-motifs_oligos_7nt_test_vs_ctrl_m4_vs_db_footprintDB-plants


; 2025-05-26.083320
$RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m5/peak-motifs_oligos_7nt_test_vs_ctrl_m5.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m5/peak-motifs_oligos_7nt_test_vs_ctrl_m5_vs_db_footprintDB-plants


; 2025-05-26.083322
$RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m6/peak-motifs_oligos_7nt_test_vs_ctrl_m6.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m6/peak-motifs_oligos_7nt_test_vs_ctrl_m6_vs_db_footprintDB-plants


; 2025-05-26.083324
$RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m7/peak-motifs_oligos_7nt_test_vs_ctrl_m7.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m7/peak-motifs_oligos_7nt_test_vs_ctrl_m7_vs_db_footprintDB-plants


; 2025-05-26.083326
$RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m8/peak-motifs_oligos_7nt_test_vs_ctrl_m8.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m8/peak-motifs_oligos_7nt_test_vs_ctrl_m8_vs_db_footprintDB-plants


; 2025-05-26.083328
$RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m9/peak-motifs_oligos_7nt_test_vs_ctrl_m9.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m9/peak-motifs_oligos_7nt_test_vs_ctrl_m9_vs_db_footprintDB-plants


; 2025-05-26.083330
$RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m10/peak-motifs_oligos_7nt_test_vs_ctrl_m10.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m10/peak-motifs_oligos_7nt_test_vs_ctrl_m10_vs_db_footprintDB-plants


; 2025-05-26.083332
$RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m1/peak-motifs_oligos_8nt_test_vs_ctrl_m1.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m1/peak-motifs_oligos_8nt_test_vs_ctrl_m1_vs_db_footprintDB-plants


; 2025-05-26.083334
$RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m2/peak-motifs_oligos_8nt_test_vs_ctrl_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m2/peak-motifs_oligos_8nt_test_vs_ctrl_m2_vs_db_footprintDB-plants


; 2025-05-26.083336
$RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m3/peak-motifs_oligos_8nt_test_vs_ctrl_m3.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m3/peak-motifs_oligos_8nt_test_vs_ctrl_m3_vs_db_footprintDB-plants


; 2025-05-26.083338
$RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m4/peak-motifs_oligos_8nt_test_vs_ctrl_m4.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m4/peak-motifs_oligos_8nt_test_vs_ctrl_m4_vs_db_footprintDB-plants


; 2025-05-26.083340
$RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m5/peak-motifs_oligos_8nt_test_vs_ctrl_m5.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m5/peak-motifs_oligos_8nt_test_vs_ctrl_m5_vs_db_footprintDB-plants


; 2025-05-26.083342
$RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m6/peak-motifs_oligos_8nt_test_vs_ctrl_m6.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m6/peak-motifs_oligos_8nt_test_vs_ctrl_m6_vs_db_footprintDB-plants


; 2025-05-26.083344
$RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m7/peak-motifs_oligos_8nt_test_vs_ctrl_m7.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m7/peak-motifs_oligos_8nt_test_vs_ctrl_m7_vs_db_footprintDB-plants


; 2025-05-26.083346
$RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m8/peak-motifs_oligos_8nt_test_vs_ctrl_m8.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m8/peak-motifs_oligos_8nt_test_vs_ctrl_m8_vs_db_footprintDB-plants


; 2025-05-26.083348
$RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m9/peak-motifs_oligos_8nt_test_vs_ctrl_m9.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m9/peak-motifs_oligos_8nt_test_vs_ctrl_m9_vs_db_footprintDB-plants


; 2025-05-26.083350
$RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m10/peak-motifs_oligos_8nt_test_vs_ctrl_m10.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m10/peak-motifs_oligos_8nt_test_vs_ctrl_m10_vs_db_footprintDB-plants


; 2025-05-26.083352
$RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m1/peak-motifs_dyads_test_vs_ctrl_m1.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m1/peak-motifs_dyads_test_vs_ctrl_m1_vs_db_footprintDB-plants


; 2025-05-26.083354
$RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2_vs_db_footprintDB-plants


; 2025-05-26.083356
$RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m3/peak-motifs_dyads_test_vs_ctrl_m3.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m3/peak-motifs_dyads_test_vs_ctrl_m3_vs_db_footprintDB-plants


; 2025-05-26.083358
$RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4_vs_db_footprintDB-plants


; 2025-05-26.083400
$RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m5/peak-motifs_dyads_test_vs_ctrl_m5.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m5/peak-motifs_dyads_test_vs_ctrl_m5_vs_db_footprintDB-plants


; 2025-05-26.083402
$RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m6/peak-motifs_dyads_test_vs_ctrl_m6.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m6/peak-motifs_dyads_test_vs_ctrl_m6_vs_db_footprintDB-plants


; 2025-05-26.083404
$RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m7/peak-motifs_dyads_test_vs_ctrl_m7.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m7/peak-motifs_dyads_test_vs_ctrl_m7_vs_db_footprintDB-plants


; 2025-05-26.083406
$RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m8/peak-motifs_dyads_test_vs_ctrl_m8.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m8/peak-motifs_dyads_test_vs_ctrl_m8_vs_db_footprintDB-plants


; 2025-05-26.083408
$RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m9/peak-motifs_dyads_test_vs_ctrl_m9.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m9/peak-motifs_dyads_test_vs_ctrl_m9_vs_db_footprintDB-plants


; 2025-05-26.083410
$RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m10/peak-motifs_dyads_test_vs_ctrl_m10.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m10/peak-motifs_dyads_test_vs_ctrl_m10_vs_db_footprintDB-plants


; 2025-05-26.083412
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_vs_db/peak-motifs_motifs_vs_db_footprintDB-plants.tab_time.txt $RSAT/perl-scripts/compare-matrices -v 1 -mode matches -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/peak-motifs_motifs_discovered.tf -format2 tf -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -mode matches -strand DR -uth offset_rank 1 -lth w 5 -lth Wr 0.3 -lth cor 0.7 -lth Ncor 0.4 -return matrix_name,matrix_id,cor,Ncor,width,strand,offset,alignments_1ton -sort Ncor -quick -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_vs_db/peak-motifs_motifs_vs_db_footprintDB-plants.tab


; 2025-05-26.083423
$RSAT/perl-scripts/convert-graph -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_vs_db/peak-motifs_motifs_vs_db_footprintDB-plants.tab -ewidth -ecolors fire -layout spring -from tab -to gml -scol 3 -tcol 4 -wcol 5 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_vs_db/peak-motifs_motifs_vs_db_footprintDB-plants.gml


; 2025-05-26.083523
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m1/peak-motifs_oligos_6nt_test_vs_ctrl_m1_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m1/peak-motifs_oligos_6nt_test_vs_ctrl_m1.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt  -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score  -lth score 7.5 -origin center -offset 200 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m1/peak-motifs_oligos_6nt_test_vs_ctrl_m1_sites.tab


; 2025-05-26.083524
grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m1/peak-motifs_oligos_6nt_test_vs_ctrl_m1_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m1/peak-motifs_oligos_6nt_test_vs_ctrl_m1_site_distrib.tab


; 2025-05-26.083524
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m1/peak-motifs_oligos_6nt_test_vs_ctrl_m1_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : oligos_6nt_test_vs_ctrl_m1' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m1/peak-motifs_oligos_6nt_test_vs_ctrl_m1_site_distrib.png


; 2025-05-26.083524
$RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m1/peak-motifs_oligos_6nt_test_vs_ctrl_m1_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m1/peak-motifs_oligos_6nt_test_vs_ctrl_m1_sites_per_peak.tab


; 2025-05-26.083524
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m1/peak-motifs_oligos_6nt_test_vs_ctrl_m1_sites_per_peak.tab -lines -xcol 1 -ycol 4  -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : oligos_6nt_test_vs_ctrl_m1' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m1/peak-motifs_oligos_6nt_test_vs_ctrl_m1_sites_per_peak.png


; 2025-05-26.083524
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m2/peak-motifs_oligos_6nt_test_vs_ctrl_m2_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m2/peak-motifs_oligos_6nt_test_vs_ctrl_m2.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt  -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score  -lth score 7.5 -origin center -offset 200 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m2/peak-motifs_oligos_6nt_test_vs_ctrl_m2_sites.tab


; 2025-05-26.083525
grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m2/peak-motifs_oligos_6nt_test_vs_ctrl_m2_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m2/peak-motifs_oligos_6nt_test_vs_ctrl_m2_site_distrib.tab


; 2025-05-26.083525
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m2/peak-motifs_oligos_6nt_test_vs_ctrl_m2_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : oligos_6nt_test_vs_ctrl_m2' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m2/peak-motifs_oligos_6nt_test_vs_ctrl_m2_site_distrib.png


; 2025-05-26.083525
$RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m2/peak-motifs_oligos_6nt_test_vs_ctrl_m2_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m2/peak-motifs_oligos_6nt_test_vs_ctrl_m2_sites_per_peak.tab


; 2025-05-26.083526
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m2/peak-motifs_oligos_6nt_test_vs_ctrl_m2_sites_per_peak.tab -lines -xcol 1 -ycol 4  -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : oligos_6nt_test_vs_ctrl_m2' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m2/peak-motifs_oligos_6nt_test_vs_ctrl_m2_sites_per_peak.png


; 2025-05-26.083526
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m3/peak-motifs_oligos_6nt_test_vs_ctrl_m3_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m3/peak-motifs_oligos_6nt_test_vs_ctrl_m3.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt  -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score  -lth score 7.5 -origin center -offset 200 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m3/peak-motifs_oligos_6nt_test_vs_ctrl_m3_sites.tab


; 2025-05-26.083527
grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m3/peak-motifs_oligos_6nt_test_vs_ctrl_m3_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m3/peak-motifs_oligos_6nt_test_vs_ctrl_m3_site_distrib.tab


; 2025-05-26.083527
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m3/peak-motifs_oligos_6nt_test_vs_ctrl_m3_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : oligos_6nt_test_vs_ctrl_m3' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m3/peak-motifs_oligos_6nt_test_vs_ctrl_m3_site_distrib.png


; 2025-05-26.083527
$RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m3/peak-motifs_oligos_6nt_test_vs_ctrl_m3_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m3/peak-motifs_oligos_6nt_test_vs_ctrl_m3_sites_per_peak.tab


; 2025-05-26.083527
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m3/peak-motifs_oligos_6nt_test_vs_ctrl_m3_sites_per_peak.tab -lines -xcol 1 -ycol 4  -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : oligos_6nt_test_vs_ctrl_m3' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m3/peak-motifs_oligos_6nt_test_vs_ctrl_m3_sites_per_peak.png


; 2025-05-26.083527
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m4/peak-motifs_oligos_6nt_test_vs_ctrl_m4_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m4/peak-motifs_oligos_6nt_test_vs_ctrl_m4.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt  -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score  -lth score 7.5 -origin center -offset 200 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m4/peak-motifs_oligos_6nt_test_vs_ctrl_m4_sites.tab


; 2025-05-26.083528
grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m4/peak-motifs_oligos_6nt_test_vs_ctrl_m4_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m4/peak-motifs_oligos_6nt_test_vs_ctrl_m4_site_distrib.tab


; 2025-05-26.083528
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m4/peak-motifs_oligos_6nt_test_vs_ctrl_m4_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : oligos_6nt_test_vs_ctrl_m4' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m4/peak-motifs_oligos_6nt_test_vs_ctrl_m4_site_distrib.png


; 2025-05-26.083528
$RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m4/peak-motifs_oligos_6nt_test_vs_ctrl_m4_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m4/peak-motifs_oligos_6nt_test_vs_ctrl_m4_sites_per_peak.tab


; 2025-05-26.083528
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m4/peak-motifs_oligos_6nt_test_vs_ctrl_m4_sites_per_peak.tab -lines -xcol 1 -ycol 4  -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : oligos_6nt_test_vs_ctrl_m4' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m4/peak-motifs_oligos_6nt_test_vs_ctrl_m4_sites_per_peak.png


; 2025-05-26.083529
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m5/peak-motifs_oligos_6nt_test_vs_ctrl_m5_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m5/peak-motifs_oligos_6nt_test_vs_ctrl_m5.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt  -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score  -lth score 7.5 -origin center -offset 200 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m5/peak-motifs_oligos_6nt_test_vs_ctrl_m5_sites.tab


; 2025-05-26.083529
grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m5/peak-motifs_oligos_6nt_test_vs_ctrl_m5_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m5/peak-motifs_oligos_6nt_test_vs_ctrl_m5_site_distrib.tab


; 2025-05-26.083530
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m5/peak-motifs_oligos_6nt_test_vs_ctrl_m5_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : oligos_6nt_test_vs_ctrl_m5' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m5/peak-motifs_oligos_6nt_test_vs_ctrl_m5_site_distrib.png


; 2025-05-26.083530
$RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m5/peak-motifs_oligos_6nt_test_vs_ctrl_m5_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m5/peak-motifs_oligos_6nt_test_vs_ctrl_m5_sites_per_peak.tab


; 2025-05-26.083530
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m5/peak-motifs_oligos_6nt_test_vs_ctrl_m5_sites_per_peak.tab -lines -xcol 1 -ycol 4  -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : oligos_6nt_test_vs_ctrl_m5' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m5/peak-motifs_oligos_6nt_test_vs_ctrl_m5_sites_per_peak.png


; 2025-05-26.083530
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m6/peak-motifs_oligos_6nt_test_vs_ctrl_m6_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m6/peak-motifs_oligos_6nt_test_vs_ctrl_m6.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt  -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score  -lth score 7.5 -origin center -offset 200 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m6/peak-motifs_oligos_6nt_test_vs_ctrl_m6_sites.tab


; 2025-05-26.083531
grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m6/peak-motifs_oligos_6nt_test_vs_ctrl_m6_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m6/peak-motifs_oligos_6nt_test_vs_ctrl_m6_site_distrib.tab


; 2025-05-26.083531
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m6/peak-motifs_oligos_6nt_test_vs_ctrl_m6_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : oligos_6nt_test_vs_ctrl_m6' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m6/peak-motifs_oligos_6nt_test_vs_ctrl_m6_site_distrib.png


; 2025-05-26.083531
$RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m6/peak-motifs_oligos_6nt_test_vs_ctrl_m6_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m6/peak-motifs_oligos_6nt_test_vs_ctrl_m6_sites_per_peak.tab


; 2025-05-26.083531
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m6/peak-motifs_oligos_6nt_test_vs_ctrl_m6_sites_per_peak.tab -lines -xcol 1 -ycol 4  -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : oligos_6nt_test_vs_ctrl_m6' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m6/peak-motifs_oligos_6nt_test_vs_ctrl_m6_sites_per_peak.png


; 2025-05-26.083531
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m7/peak-motifs_oligos_6nt_test_vs_ctrl_m7_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m7/peak-motifs_oligos_6nt_test_vs_ctrl_m7.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt  -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score  -lth score 7.5 -origin center -offset 200 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m7/peak-motifs_oligos_6nt_test_vs_ctrl_m7_sites.tab


; 2025-05-26.083532
grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m7/peak-motifs_oligos_6nt_test_vs_ctrl_m7_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m7/peak-motifs_oligos_6nt_test_vs_ctrl_m7_site_distrib.tab


; 2025-05-26.083532
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m7/peak-motifs_oligos_6nt_test_vs_ctrl_m7_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : oligos_6nt_test_vs_ctrl_m7' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m7/peak-motifs_oligos_6nt_test_vs_ctrl_m7_site_distrib.png


; 2025-05-26.083532
$RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m7/peak-motifs_oligos_6nt_test_vs_ctrl_m7_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m7/peak-motifs_oligos_6nt_test_vs_ctrl_m7_sites_per_peak.tab


; 2025-05-26.083533
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m7/peak-motifs_oligos_6nt_test_vs_ctrl_m7_sites_per_peak.tab -lines -xcol 1 -ycol 4  -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : oligos_6nt_test_vs_ctrl_m7' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m7/peak-motifs_oligos_6nt_test_vs_ctrl_m7_sites_per_peak.png


; 2025-05-26.083533
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m8/peak-motifs_oligos_6nt_test_vs_ctrl_m8_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m8/peak-motifs_oligos_6nt_test_vs_ctrl_m8.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt  -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score  -lth score 7.5 -origin center -offset 200 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m8/peak-motifs_oligos_6nt_test_vs_ctrl_m8_sites.tab


; 2025-05-26.083534
grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m8/peak-motifs_oligos_6nt_test_vs_ctrl_m8_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m8/peak-motifs_oligos_6nt_test_vs_ctrl_m8_site_distrib.tab


; 2025-05-26.083534
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m8/peak-motifs_oligos_6nt_test_vs_ctrl_m8_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : oligos_6nt_test_vs_ctrl_m8' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m8/peak-motifs_oligos_6nt_test_vs_ctrl_m8_site_distrib.png


; 2025-05-26.083534
$RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m8/peak-motifs_oligos_6nt_test_vs_ctrl_m8_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m8/peak-motifs_oligos_6nt_test_vs_ctrl_m8_sites_per_peak.tab


; 2025-05-26.083534
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m8/peak-motifs_oligos_6nt_test_vs_ctrl_m8_sites_per_peak.tab -lines -xcol 1 -ycol 4  -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : oligos_6nt_test_vs_ctrl_m8' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m8/peak-motifs_oligos_6nt_test_vs_ctrl_m8_sites_per_peak.png


; 2025-05-26.083534
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m9/peak-motifs_oligos_6nt_test_vs_ctrl_m9_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m9/peak-motifs_oligos_6nt_test_vs_ctrl_m9.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt  -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score  -lth score 7.5 -origin center -offset 200 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m9/peak-motifs_oligos_6nt_test_vs_ctrl_m9_sites.tab


; 2025-05-26.083535
grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m9/peak-motifs_oligos_6nt_test_vs_ctrl_m9_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m9/peak-motifs_oligos_6nt_test_vs_ctrl_m9_site_distrib.tab


; 2025-05-26.083535
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m9/peak-motifs_oligos_6nt_test_vs_ctrl_m9_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : oligos_6nt_test_vs_ctrl_m9' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m9/peak-motifs_oligos_6nt_test_vs_ctrl_m9_site_distrib.png


; 2025-05-26.083535
$RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m9/peak-motifs_oligos_6nt_test_vs_ctrl_m9_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m9/peak-motifs_oligos_6nt_test_vs_ctrl_m9_sites_per_peak.tab


; 2025-05-26.083535
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m9/peak-motifs_oligos_6nt_test_vs_ctrl_m9_sites_per_peak.tab -lines -xcol 1 -ycol 4  -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : oligos_6nt_test_vs_ctrl_m9' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m9/peak-motifs_oligos_6nt_test_vs_ctrl_m9_sites_per_peak.png


; 2025-05-26.083535
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m10/peak-motifs_oligos_6nt_test_vs_ctrl_m10_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m10/peak-motifs_oligos_6nt_test_vs_ctrl_m10.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt  -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score  -lth score 7.5 -origin center -offset 200 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m10/peak-motifs_oligos_6nt_test_vs_ctrl_m10_sites.tab


; 2025-05-26.083536
grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m10/peak-motifs_oligos_6nt_test_vs_ctrl_m10_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m10/peak-motifs_oligos_6nt_test_vs_ctrl_m10_site_distrib.tab


; 2025-05-26.083536
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m10/peak-motifs_oligos_6nt_test_vs_ctrl_m10_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : oligos_6nt_test_vs_ctrl_m10' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m10/peak-motifs_oligos_6nt_test_vs_ctrl_m10_site_distrib.png


; 2025-05-26.083537
$RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m10/peak-motifs_oligos_6nt_test_vs_ctrl_m10_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m10/peak-motifs_oligos_6nt_test_vs_ctrl_m10_sites_per_peak.tab


; 2025-05-26.083537
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m10/peak-motifs_oligos_6nt_test_vs_ctrl_m10_sites_per_peak.tab -lines -xcol 1 -ycol 4  -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : oligos_6nt_test_vs_ctrl_m10' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m10/peak-motifs_oligos_6nt_test_vs_ctrl_m10_sites_per_peak.png


; 2025-05-26.083537
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m1/peak-motifs_oligos_7nt_test_vs_ctrl_m1_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m1/peak-motifs_oligos_7nt_test_vs_ctrl_m1.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt  -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score  -lth score 7.5 -origin center -offset 200 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m1/peak-motifs_oligos_7nt_test_vs_ctrl_m1_sites.tab


; 2025-05-26.083538
grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m1/peak-motifs_oligos_7nt_test_vs_ctrl_m1_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m1/peak-motifs_oligos_7nt_test_vs_ctrl_m1_site_distrib.tab


; 2025-05-26.083538
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m1/peak-motifs_oligos_7nt_test_vs_ctrl_m1_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : oligos_7nt_test_vs_ctrl_m1' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m1/peak-motifs_oligos_7nt_test_vs_ctrl_m1_site_distrib.png


; 2025-05-26.083538
$RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m1/peak-motifs_oligos_7nt_test_vs_ctrl_m1_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m1/peak-motifs_oligos_7nt_test_vs_ctrl_m1_sites_per_peak.tab


; 2025-05-26.083538
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m1/peak-motifs_oligos_7nt_test_vs_ctrl_m1_sites_per_peak.tab -lines -xcol 1 -ycol 4  -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : oligos_7nt_test_vs_ctrl_m1' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m1/peak-motifs_oligos_7nt_test_vs_ctrl_m1_sites_per_peak.png


; 2025-05-26.083538
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m2/peak-motifs_oligos_7nt_test_vs_ctrl_m2_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m2/peak-motifs_oligos_7nt_test_vs_ctrl_m2.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt  -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score  -lth score 7.5 -origin center -offset 200 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m2/peak-motifs_oligos_7nt_test_vs_ctrl_m2_sites.tab


; 2025-05-26.083539
grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m2/peak-motifs_oligos_7nt_test_vs_ctrl_m2_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m2/peak-motifs_oligos_7nt_test_vs_ctrl_m2_site_distrib.tab


; 2025-05-26.083539
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m2/peak-motifs_oligos_7nt_test_vs_ctrl_m2_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : oligos_7nt_test_vs_ctrl_m2' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m2/peak-motifs_oligos_7nt_test_vs_ctrl_m2_site_distrib.png


; 2025-05-26.083539
$RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m2/peak-motifs_oligos_7nt_test_vs_ctrl_m2_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m2/peak-motifs_oligos_7nt_test_vs_ctrl_m2_sites_per_peak.tab


; 2025-05-26.083539
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m2/peak-motifs_oligos_7nt_test_vs_ctrl_m2_sites_per_peak.tab -lines -xcol 1 -ycol 4  -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : oligos_7nt_test_vs_ctrl_m2' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m2/peak-motifs_oligos_7nt_test_vs_ctrl_m2_sites_per_peak.png


; 2025-05-26.083540
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m3/peak-motifs_oligos_7nt_test_vs_ctrl_m3_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m3/peak-motifs_oligos_7nt_test_vs_ctrl_m3.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt  -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score  -lth score 7.5 -origin center -offset 200 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m3/peak-motifs_oligos_7nt_test_vs_ctrl_m3_sites.tab


; 2025-05-26.083541
grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m3/peak-motifs_oligos_7nt_test_vs_ctrl_m3_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m3/peak-motifs_oligos_7nt_test_vs_ctrl_m3_site_distrib.tab


; 2025-05-26.083541
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m3/peak-motifs_oligos_7nt_test_vs_ctrl_m3_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : oligos_7nt_test_vs_ctrl_m3' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m3/peak-motifs_oligos_7nt_test_vs_ctrl_m3_site_distrib.png


; 2025-05-26.083541
$RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m3/peak-motifs_oligos_7nt_test_vs_ctrl_m3_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m3/peak-motifs_oligos_7nt_test_vs_ctrl_m3_sites_per_peak.tab


; 2025-05-26.083541
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m3/peak-motifs_oligos_7nt_test_vs_ctrl_m3_sites_per_peak.tab -lines -xcol 1 -ycol 4  -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : oligos_7nt_test_vs_ctrl_m3' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m3/peak-motifs_oligos_7nt_test_vs_ctrl_m3_sites_per_peak.png


; 2025-05-26.083541
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m4/peak-motifs_oligos_7nt_test_vs_ctrl_m4_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m4/peak-motifs_oligos_7nt_test_vs_ctrl_m4.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt  -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score  -lth score 7.5 -origin center -offset 200 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m4/peak-motifs_oligos_7nt_test_vs_ctrl_m4_sites.tab


; 2025-05-26.083542
grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m4/peak-motifs_oligos_7nt_test_vs_ctrl_m4_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m4/peak-motifs_oligos_7nt_test_vs_ctrl_m4_site_distrib.tab


; 2025-05-26.083542
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m4/peak-motifs_oligos_7nt_test_vs_ctrl_m4_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : oligos_7nt_test_vs_ctrl_m4' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m4/peak-motifs_oligos_7nt_test_vs_ctrl_m4_site_distrib.png


; 2025-05-26.083542
$RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m4/peak-motifs_oligos_7nt_test_vs_ctrl_m4_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m4/peak-motifs_oligos_7nt_test_vs_ctrl_m4_sites_per_peak.tab


; 2025-05-26.083542
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m4/peak-motifs_oligos_7nt_test_vs_ctrl_m4_sites_per_peak.tab -lines -xcol 1 -ycol 4  -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : oligos_7nt_test_vs_ctrl_m4' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m4/peak-motifs_oligos_7nt_test_vs_ctrl_m4_sites_per_peak.png


; 2025-05-26.083542
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m5/peak-motifs_oligos_7nt_test_vs_ctrl_m5_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m5/peak-motifs_oligos_7nt_test_vs_ctrl_m5.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt  -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score  -lth score 7.5 -origin center -offset 200 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m5/peak-motifs_oligos_7nt_test_vs_ctrl_m5_sites.tab


; 2025-05-26.083543
grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m5/peak-motifs_oligos_7nt_test_vs_ctrl_m5_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m5/peak-motifs_oligos_7nt_test_vs_ctrl_m5_site_distrib.tab


; 2025-05-26.083543
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m5/peak-motifs_oligos_7nt_test_vs_ctrl_m5_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : oligos_7nt_test_vs_ctrl_m5' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m5/peak-motifs_oligos_7nt_test_vs_ctrl_m5_site_distrib.png


; 2025-05-26.083544
$RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m5/peak-motifs_oligos_7nt_test_vs_ctrl_m5_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m5/peak-motifs_oligos_7nt_test_vs_ctrl_m5_sites_per_peak.tab


; 2025-05-26.083544
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m5/peak-motifs_oligos_7nt_test_vs_ctrl_m5_sites_per_peak.tab -lines -xcol 1 -ycol 4  -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : oligos_7nt_test_vs_ctrl_m5' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m5/peak-motifs_oligos_7nt_test_vs_ctrl_m5_sites_per_peak.png


; 2025-05-26.083544
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m6/peak-motifs_oligos_7nt_test_vs_ctrl_m6_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m6/peak-motifs_oligos_7nt_test_vs_ctrl_m6.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt  -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score  -lth score 7.5 -origin center -offset 200 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m6/peak-motifs_oligos_7nt_test_vs_ctrl_m6_sites.tab


; 2025-05-26.083545
grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m6/peak-motifs_oligos_7nt_test_vs_ctrl_m6_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m6/peak-motifs_oligos_7nt_test_vs_ctrl_m6_site_distrib.tab


; 2025-05-26.083545
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m6/peak-motifs_oligos_7nt_test_vs_ctrl_m6_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : oligos_7nt_test_vs_ctrl_m6' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m6/peak-motifs_oligos_7nt_test_vs_ctrl_m6_site_distrib.png


; 2025-05-26.083545
$RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m6/peak-motifs_oligos_7nt_test_vs_ctrl_m6_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m6/peak-motifs_oligos_7nt_test_vs_ctrl_m6_sites_per_peak.tab


; 2025-05-26.083545
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m6/peak-motifs_oligos_7nt_test_vs_ctrl_m6_sites_per_peak.tab -lines -xcol 1 -ycol 4  -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : oligos_7nt_test_vs_ctrl_m6' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m6/peak-motifs_oligos_7nt_test_vs_ctrl_m6_sites_per_peak.png


; 2025-05-26.083545
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m7/peak-motifs_oligos_7nt_test_vs_ctrl_m7_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m7/peak-motifs_oligos_7nt_test_vs_ctrl_m7.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt  -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score  -lth score 7.5 -origin center -offset 200 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m7/peak-motifs_oligos_7nt_test_vs_ctrl_m7_sites.tab


; 2025-05-26.083546
grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m7/peak-motifs_oligos_7nt_test_vs_ctrl_m7_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m7/peak-motifs_oligos_7nt_test_vs_ctrl_m7_site_distrib.tab


; 2025-05-26.083546
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m7/peak-motifs_oligos_7nt_test_vs_ctrl_m7_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : oligos_7nt_test_vs_ctrl_m7' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m7/peak-motifs_oligos_7nt_test_vs_ctrl_m7_site_distrib.png


; 2025-05-26.083547
$RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m7/peak-motifs_oligos_7nt_test_vs_ctrl_m7_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m7/peak-motifs_oligos_7nt_test_vs_ctrl_m7_sites_per_peak.tab


; 2025-05-26.083547
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m7/peak-motifs_oligos_7nt_test_vs_ctrl_m7_sites_per_peak.tab -lines -xcol 1 -ycol 4  -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : oligos_7nt_test_vs_ctrl_m7' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m7/peak-motifs_oligos_7nt_test_vs_ctrl_m7_sites_per_peak.png


; 2025-05-26.083547
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m8/peak-motifs_oligos_7nt_test_vs_ctrl_m8_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m8/peak-motifs_oligos_7nt_test_vs_ctrl_m8.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt  -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score  -lth score 7.5 -origin center -offset 200 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m8/peak-motifs_oligos_7nt_test_vs_ctrl_m8_sites.tab


; 2025-05-26.083548
grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m8/peak-motifs_oligos_7nt_test_vs_ctrl_m8_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m8/peak-motifs_oligos_7nt_test_vs_ctrl_m8_site_distrib.tab


; 2025-05-26.083548
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m8/peak-motifs_oligos_7nt_test_vs_ctrl_m8_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : oligos_7nt_test_vs_ctrl_m8' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m8/peak-motifs_oligos_7nt_test_vs_ctrl_m8_site_distrib.png


; 2025-05-26.083548
$RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m8/peak-motifs_oligos_7nt_test_vs_ctrl_m8_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m8/peak-motifs_oligos_7nt_test_vs_ctrl_m8_sites_per_peak.tab


; 2025-05-26.083548
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m8/peak-motifs_oligos_7nt_test_vs_ctrl_m8_sites_per_peak.tab -lines -xcol 1 -ycol 4  -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : oligos_7nt_test_vs_ctrl_m8' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m8/peak-motifs_oligos_7nt_test_vs_ctrl_m8_sites_per_peak.png


; 2025-05-26.083548
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m9/peak-motifs_oligos_7nt_test_vs_ctrl_m9_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m9/peak-motifs_oligos_7nt_test_vs_ctrl_m9.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt  -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score  -lth score 7.5 -origin center -offset 200 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m9/peak-motifs_oligos_7nt_test_vs_ctrl_m9_sites.tab


; 2025-05-26.083549
grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m9/peak-motifs_oligos_7nt_test_vs_ctrl_m9_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m9/peak-motifs_oligos_7nt_test_vs_ctrl_m9_site_distrib.tab


; 2025-05-26.083549
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m9/peak-motifs_oligos_7nt_test_vs_ctrl_m9_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : oligos_7nt_test_vs_ctrl_m9' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m9/peak-motifs_oligos_7nt_test_vs_ctrl_m9_site_distrib.png


; 2025-05-26.083549
$RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m9/peak-motifs_oligos_7nt_test_vs_ctrl_m9_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m9/peak-motifs_oligos_7nt_test_vs_ctrl_m9_sites_per_peak.tab


; 2025-05-26.083549
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m9/peak-motifs_oligos_7nt_test_vs_ctrl_m9_sites_per_peak.tab -lines -xcol 1 -ycol 4  -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : oligos_7nt_test_vs_ctrl_m9' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m9/peak-motifs_oligos_7nt_test_vs_ctrl_m9_sites_per_peak.png


; 2025-05-26.083550
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m10/peak-motifs_oligos_7nt_test_vs_ctrl_m10_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m10/peak-motifs_oligos_7nt_test_vs_ctrl_m10.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt  -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score  -lth score 7.5 -origin center -offset 200 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m10/peak-motifs_oligos_7nt_test_vs_ctrl_m10_sites.tab


; 2025-05-26.083550
grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m10/peak-motifs_oligos_7nt_test_vs_ctrl_m10_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m10/peak-motifs_oligos_7nt_test_vs_ctrl_m10_site_distrib.tab


; 2025-05-26.083551
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m10/peak-motifs_oligos_7nt_test_vs_ctrl_m10_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : oligos_7nt_test_vs_ctrl_m10' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m10/peak-motifs_oligos_7nt_test_vs_ctrl_m10_site_distrib.png


; 2025-05-26.083551
$RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m10/peak-motifs_oligos_7nt_test_vs_ctrl_m10_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m10/peak-motifs_oligos_7nt_test_vs_ctrl_m10_sites_per_peak.tab


; 2025-05-26.083551
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m10/peak-motifs_oligos_7nt_test_vs_ctrl_m10_sites_per_peak.tab -lines -xcol 1 -ycol 4  -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : oligos_7nt_test_vs_ctrl_m10' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m10/peak-motifs_oligos_7nt_test_vs_ctrl_m10_sites_per_peak.png


; 2025-05-26.083551
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m1/peak-motifs_oligos_8nt_test_vs_ctrl_m1_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m1/peak-motifs_oligos_8nt_test_vs_ctrl_m1.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt  -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score  -lth score 7.5 -origin center -offset 200 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m1/peak-motifs_oligos_8nt_test_vs_ctrl_m1_sites.tab


; 2025-05-26.083552
grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m1/peak-motifs_oligos_8nt_test_vs_ctrl_m1_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m1/peak-motifs_oligos_8nt_test_vs_ctrl_m1_site_distrib.tab


; 2025-05-26.083552
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m1/peak-motifs_oligos_8nt_test_vs_ctrl_m1_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : oligos_8nt_test_vs_ctrl_m1' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m1/peak-motifs_oligos_8nt_test_vs_ctrl_m1_site_distrib.png


; 2025-05-26.083552
$RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m1/peak-motifs_oligos_8nt_test_vs_ctrl_m1_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m1/peak-motifs_oligos_8nt_test_vs_ctrl_m1_sites_per_peak.tab


; 2025-05-26.083552
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m1/peak-motifs_oligos_8nt_test_vs_ctrl_m1_sites_per_peak.tab -lines -xcol 1 -ycol 4  -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : oligos_8nt_test_vs_ctrl_m1' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m1/peak-motifs_oligos_8nt_test_vs_ctrl_m1_sites_per_peak.png


; 2025-05-26.083553
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m2/peak-motifs_oligos_8nt_test_vs_ctrl_m2_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m2/peak-motifs_oligos_8nt_test_vs_ctrl_m2.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt  -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score  -lth score 7.5 -origin center -offset 200 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m2/peak-motifs_oligos_8nt_test_vs_ctrl_m2_sites.tab


; 2025-05-26.083554
grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m2/peak-motifs_oligos_8nt_test_vs_ctrl_m2_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m2/peak-motifs_oligos_8nt_test_vs_ctrl_m2_site_distrib.tab


; 2025-05-26.083554
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m2/peak-motifs_oligos_8nt_test_vs_ctrl_m2_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : oligos_8nt_test_vs_ctrl_m2' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m2/peak-motifs_oligos_8nt_test_vs_ctrl_m2_site_distrib.png


; 2025-05-26.083554
$RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m2/peak-motifs_oligos_8nt_test_vs_ctrl_m2_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m2/peak-motifs_oligos_8nt_test_vs_ctrl_m2_sites_per_peak.tab


; 2025-05-26.083554
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m2/peak-motifs_oligos_8nt_test_vs_ctrl_m2_sites_per_peak.tab -lines -xcol 1 -ycol 4  -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : oligos_8nt_test_vs_ctrl_m2' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m2/peak-motifs_oligos_8nt_test_vs_ctrl_m2_sites_per_peak.png


; 2025-05-26.083554
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m3/peak-motifs_oligos_8nt_test_vs_ctrl_m3_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m3/peak-motifs_oligos_8nt_test_vs_ctrl_m3.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt  -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score  -lth score 7.5 -origin center -offset 200 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m3/peak-motifs_oligos_8nt_test_vs_ctrl_m3_sites.tab


; 2025-05-26.083555
grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m3/peak-motifs_oligos_8nt_test_vs_ctrl_m3_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m3/peak-motifs_oligos_8nt_test_vs_ctrl_m3_site_distrib.tab


; 2025-05-26.083555
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m3/peak-motifs_oligos_8nt_test_vs_ctrl_m3_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : oligos_8nt_test_vs_ctrl_m3' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m3/peak-motifs_oligos_8nt_test_vs_ctrl_m3_site_distrib.png


; 2025-05-26.083555
$RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m3/peak-motifs_oligos_8nt_test_vs_ctrl_m3_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m3/peak-motifs_oligos_8nt_test_vs_ctrl_m3_sites_per_peak.tab


; 2025-05-26.083555
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m3/peak-motifs_oligos_8nt_test_vs_ctrl_m3_sites_per_peak.tab -lines -xcol 1 -ycol 4  -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : oligos_8nt_test_vs_ctrl_m3' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m3/peak-motifs_oligos_8nt_test_vs_ctrl_m3_sites_per_peak.png


; 2025-05-26.083555
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m4/peak-motifs_oligos_8nt_test_vs_ctrl_m4_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m4/peak-motifs_oligos_8nt_test_vs_ctrl_m4.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt  -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score  -lth score 7.5 -origin center -offset 200 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m4/peak-motifs_oligos_8nt_test_vs_ctrl_m4_sites.tab


; 2025-05-26.083556
grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m4/peak-motifs_oligos_8nt_test_vs_ctrl_m4_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m4/peak-motifs_oligos_8nt_test_vs_ctrl_m4_site_distrib.tab


; 2025-05-26.083556
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m4/peak-motifs_oligos_8nt_test_vs_ctrl_m4_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : oligos_8nt_test_vs_ctrl_m4' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m4/peak-motifs_oligos_8nt_test_vs_ctrl_m4_site_distrib.png


; 2025-05-26.083557
$RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m4/peak-motifs_oligos_8nt_test_vs_ctrl_m4_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m4/peak-motifs_oligos_8nt_test_vs_ctrl_m4_sites_per_peak.tab


; 2025-05-26.083557
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m4/peak-motifs_oligos_8nt_test_vs_ctrl_m4_sites_per_peak.tab -lines -xcol 1 -ycol 4  -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : oligos_8nt_test_vs_ctrl_m4' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m4/peak-motifs_oligos_8nt_test_vs_ctrl_m4_sites_per_peak.png


; 2025-05-26.083557
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m5/peak-motifs_oligos_8nt_test_vs_ctrl_m5_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m5/peak-motifs_oligos_8nt_test_vs_ctrl_m5.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt  -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score  -lth score 7.5 -origin center -offset 200 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m5/peak-motifs_oligos_8nt_test_vs_ctrl_m5_sites.tab


; 2025-05-26.083558
grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m5/peak-motifs_oligos_8nt_test_vs_ctrl_m5_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m5/peak-motifs_oligos_8nt_test_vs_ctrl_m5_site_distrib.tab


; 2025-05-26.083558
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m5/peak-motifs_oligos_8nt_test_vs_ctrl_m5_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : oligos_8nt_test_vs_ctrl_m5' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m5/peak-motifs_oligos_8nt_test_vs_ctrl_m5_site_distrib.png


; 2025-05-26.083558
$RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m5/peak-motifs_oligos_8nt_test_vs_ctrl_m5_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m5/peak-motifs_oligos_8nt_test_vs_ctrl_m5_sites_per_peak.tab


; 2025-05-26.083558
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m5/peak-motifs_oligos_8nt_test_vs_ctrl_m5_sites_per_peak.tab -lines -xcol 1 -ycol 4  -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : oligos_8nt_test_vs_ctrl_m5' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m5/peak-motifs_oligos_8nt_test_vs_ctrl_m5_sites_per_peak.png


; 2025-05-26.083558
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m6/peak-motifs_oligos_8nt_test_vs_ctrl_m6_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m6/peak-motifs_oligos_8nt_test_vs_ctrl_m6.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt  -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score  -lth score 7.5 -origin center -offset 200 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m6/peak-motifs_oligos_8nt_test_vs_ctrl_m6_sites.tab


; 2025-05-26.083559
grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m6/peak-motifs_oligos_8nt_test_vs_ctrl_m6_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m6/peak-motifs_oligos_8nt_test_vs_ctrl_m6_site_distrib.tab


; 2025-05-26.083559
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m6/peak-motifs_oligos_8nt_test_vs_ctrl_m6_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : oligos_8nt_test_vs_ctrl_m6' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m6/peak-motifs_oligos_8nt_test_vs_ctrl_m6_site_distrib.png


; 2025-05-26.083559
$RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m6/peak-motifs_oligos_8nt_test_vs_ctrl_m6_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m6/peak-motifs_oligos_8nt_test_vs_ctrl_m6_sites_per_peak.tab


; 2025-05-26.083600
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m6/peak-motifs_oligos_8nt_test_vs_ctrl_m6_sites_per_peak.tab -lines -xcol 1 -ycol 4  -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : oligos_8nt_test_vs_ctrl_m6' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m6/peak-motifs_oligos_8nt_test_vs_ctrl_m6_sites_per_peak.png


; 2025-05-26.083600
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m7/peak-motifs_oligos_8nt_test_vs_ctrl_m7_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m7/peak-motifs_oligos_8nt_test_vs_ctrl_m7.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt  -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score  -lth score 7.5 -origin center -offset 200 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m7/peak-motifs_oligos_8nt_test_vs_ctrl_m7_sites.tab


; 2025-05-26.083601
grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m7/peak-motifs_oligos_8nt_test_vs_ctrl_m7_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m7/peak-motifs_oligos_8nt_test_vs_ctrl_m7_site_distrib.tab


; 2025-05-26.083601
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m7/peak-motifs_oligos_8nt_test_vs_ctrl_m7_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : oligos_8nt_test_vs_ctrl_m7' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m7/peak-motifs_oligos_8nt_test_vs_ctrl_m7_site_distrib.png


; 2025-05-26.083601
$RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m7/peak-motifs_oligos_8nt_test_vs_ctrl_m7_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m7/peak-motifs_oligos_8nt_test_vs_ctrl_m7_sites_per_peak.tab


; 2025-05-26.083601
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m7/peak-motifs_oligos_8nt_test_vs_ctrl_m7_sites_per_peak.tab -lines -xcol 1 -ycol 4  -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : oligos_8nt_test_vs_ctrl_m7' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m7/peak-motifs_oligos_8nt_test_vs_ctrl_m7_sites_per_peak.png


; 2025-05-26.083601
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m8/peak-motifs_oligos_8nt_test_vs_ctrl_m8_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m8/peak-motifs_oligos_8nt_test_vs_ctrl_m8.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt  -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score  -lth score 7.5 -origin center -offset 200 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m8/peak-motifs_oligos_8nt_test_vs_ctrl_m8_sites.tab


; 2025-05-26.083602
grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m8/peak-motifs_oligos_8nt_test_vs_ctrl_m8_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m8/peak-motifs_oligos_8nt_test_vs_ctrl_m8_site_distrib.tab


; 2025-05-26.083602
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m8/peak-motifs_oligos_8nt_test_vs_ctrl_m8_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : oligos_8nt_test_vs_ctrl_m8' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m8/peak-motifs_oligos_8nt_test_vs_ctrl_m8_site_distrib.png


; 2025-05-26.083602
$RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m8/peak-motifs_oligos_8nt_test_vs_ctrl_m8_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m8/peak-motifs_oligos_8nt_test_vs_ctrl_m8_sites_per_peak.tab


; 2025-05-26.083602
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m8/peak-motifs_oligos_8nt_test_vs_ctrl_m8_sites_per_peak.tab -lines -xcol 1 -ycol 4  -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : oligos_8nt_test_vs_ctrl_m8' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m8/peak-motifs_oligos_8nt_test_vs_ctrl_m8_sites_per_peak.png


; 2025-05-26.083603
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m9/peak-motifs_oligos_8nt_test_vs_ctrl_m9_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m9/peak-motifs_oligos_8nt_test_vs_ctrl_m9.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt  -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score  -lth score 7.5 -origin center -offset 200 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m9/peak-motifs_oligos_8nt_test_vs_ctrl_m9_sites.tab


; 2025-05-26.083603
grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m9/peak-motifs_oligos_8nt_test_vs_ctrl_m9_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m9/peak-motifs_oligos_8nt_test_vs_ctrl_m9_site_distrib.tab


; 2025-05-26.083604
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m9/peak-motifs_oligos_8nt_test_vs_ctrl_m9_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : oligos_8nt_test_vs_ctrl_m9' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m9/peak-motifs_oligos_8nt_test_vs_ctrl_m9_site_distrib.png


; 2025-05-26.083604
$RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m9/peak-motifs_oligos_8nt_test_vs_ctrl_m9_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m9/peak-motifs_oligos_8nt_test_vs_ctrl_m9_sites_per_peak.tab


; 2025-05-26.083604
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m9/peak-motifs_oligos_8nt_test_vs_ctrl_m9_sites_per_peak.tab -lines -xcol 1 -ycol 4  -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : oligos_8nt_test_vs_ctrl_m9' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m9/peak-motifs_oligos_8nt_test_vs_ctrl_m9_sites_per_peak.png


; 2025-05-26.083604
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m10/peak-motifs_oligos_8nt_test_vs_ctrl_m10_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m10/peak-motifs_oligos_8nt_test_vs_ctrl_m10.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt  -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score  -lth score 7.5 -origin center -offset 200 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m10/peak-motifs_oligos_8nt_test_vs_ctrl_m10_sites.tab


; 2025-05-26.083605
grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m10/peak-motifs_oligos_8nt_test_vs_ctrl_m10_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m10/peak-motifs_oligos_8nt_test_vs_ctrl_m10_site_distrib.tab


; 2025-05-26.083605
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m10/peak-motifs_oligos_8nt_test_vs_ctrl_m10_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : oligos_8nt_test_vs_ctrl_m10' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m10/peak-motifs_oligos_8nt_test_vs_ctrl_m10_site_distrib.png


; 2025-05-26.083605
$RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m10/peak-motifs_oligos_8nt_test_vs_ctrl_m10_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m10/peak-motifs_oligos_8nt_test_vs_ctrl_m10_sites_per_peak.tab


; 2025-05-26.083605
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m10/peak-motifs_oligos_8nt_test_vs_ctrl_m10_sites_per_peak.tab -lines -xcol 1 -ycol 4  -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : oligos_8nt_test_vs_ctrl_m10' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m10/peak-motifs_oligos_8nt_test_vs_ctrl_m10_sites_per_peak.png


; 2025-05-26.083606
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m1/peak-motifs_dyads_test_vs_ctrl_m1_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m1/peak-motifs_dyads_test_vs_ctrl_m1.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt  -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score  -lth score 7.5 -origin center -offset 200 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m1/peak-motifs_dyads_test_vs_ctrl_m1_sites.tab


; 2025-05-26.083606
grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m1/peak-motifs_dyads_test_vs_ctrl_m1_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m1/peak-motifs_dyads_test_vs_ctrl_m1_site_distrib.tab


; 2025-05-26.083607
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m1/peak-motifs_dyads_test_vs_ctrl_m1_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : dyads_test_vs_ctrl_m1' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m1/peak-motifs_dyads_test_vs_ctrl_m1_site_distrib.png


; 2025-05-26.083607
$RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m1/peak-motifs_dyads_test_vs_ctrl_m1_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m1/peak-motifs_dyads_test_vs_ctrl_m1_sites_per_peak.tab


; 2025-05-26.083607
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m1/peak-motifs_dyads_test_vs_ctrl_m1_sites_per_peak.tab -lines -xcol 1 -ycol 4  -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : dyads_test_vs_ctrl_m1' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m1/peak-motifs_dyads_test_vs_ctrl_m1_sites_per_peak.png


; 2025-05-26.083607
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt  -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score  -lth score 7.5 -origin center -offset 200 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2_sites.tab


; 2025-05-26.083608
grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2_site_distrib.tab


; 2025-05-26.083608
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : dyads_test_vs_ctrl_m2' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2_site_distrib.png


; 2025-05-26.083608
$RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2_sites_per_peak.tab


; 2025-05-26.083608
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2_sites_per_peak.tab -lines -xcol 1 -ycol 4  -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : dyads_test_vs_ctrl_m2' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2_sites_per_peak.png


; 2025-05-26.083608
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m3/peak-motifs_dyads_test_vs_ctrl_m3_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m3/peak-motifs_dyads_test_vs_ctrl_m3.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt  -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score  -lth score 7.5 -origin center -offset 200 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m3/peak-motifs_dyads_test_vs_ctrl_m3_sites.tab


; 2025-05-26.083609
grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m3/peak-motifs_dyads_test_vs_ctrl_m3_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m3/peak-motifs_dyads_test_vs_ctrl_m3_site_distrib.tab


; 2025-05-26.083609
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m3/peak-motifs_dyads_test_vs_ctrl_m3_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : dyads_test_vs_ctrl_m3' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m3/peak-motifs_dyads_test_vs_ctrl_m3_site_distrib.png


; 2025-05-26.083610
$RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m3/peak-motifs_dyads_test_vs_ctrl_m3_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m3/peak-motifs_dyads_test_vs_ctrl_m3_sites_per_peak.tab


; 2025-05-26.083610
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m3/peak-motifs_dyads_test_vs_ctrl_m3_sites_per_peak.tab -lines -xcol 1 -ycol 4  -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : dyads_test_vs_ctrl_m3' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m3/peak-motifs_dyads_test_vs_ctrl_m3_sites_per_peak.png


; 2025-05-26.083610
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt  -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score  -lth score 7.5 -origin center -offset 200 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4_sites.tab


; 2025-05-26.083611
grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4_site_distrib.tab


; 2025-05-26.083611
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : dyads_test_vs_ctrl_m4' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4_site_distrib.png


; 2025-05-26.083611
$RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4_sites_per_peak.tab


; 2025-05-26.083611
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4_sites_per_peak.tab -lines -xcol 1 -ycol 4  -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : dyads_test_vs_ctrl_m4' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4_sites_per_peak.png


; 2025-05-26.083611
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m5/peak-motifs_dyads_test_vs_ctrl_m5_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m5/peak-motifs_dyads_test_vs_ctrl_m5.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt  -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score  -lth score 7.5 -origin center -offset 200 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m5/peak-motifs_dyads_test_vs_ctrl_m5_sites.tab


; 2025-05-26.083612
grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m5/peak-motifs_dyads_test_vs_ctrl_m5_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m5/peak-motifs_dyads_test_vs_ctrl_m5_site_distrib.tab


; 2025-05-26.083612
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m5/peak-motifs_dyads_test_vs_ctrl_m5_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : dyads_test_vs_ctrl_m5' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m5/peak-motifs_dyads_test_vs_ctrl_m5_site_distrib.png


; 2025-05-26.083613
$RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m5/peak-motifs_dyads_test_vs_ctrl_m5_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m5/peak-motifs_dyads_test_vs_ctrl_m5_sites_per_peak.tab


; 2025-05-26.083613
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m5/peak-motifs_dyads_test_vs_ctrl_m5_sites_per_peak.tab -lines -xcol 1 -ycol 4  -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : dyads_test_vs_ctrl_m5' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m5/peak-motifs_dyads_test_vs_ctrl_m5_sites_per_peak.png


; 2025-05-26.083613
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m6/peak-motifs_dyads_test_vs_ctrl_m6_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m6/peak-motifs_dyads_test_vs_ctrl_m6.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt  -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score  -lth score 7.5 -origin center -offset 200 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m6/peak-motifs_dyads_test_vs_ctrl_m6_sites.tab


; 2025-05-26.083614
grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m6/peak-motifs_dyads_test_vs_ctrl_m6_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m6/peak-motifs_dyads_test_vs_ctrl_m6_site_distrib.tab


; 2025-05-26.083614
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m6/peak-motifs_dyads_test_vs_ctrl_m6_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : dyads_test_vs_ctrl_m6' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m6/peak-motifs_dyads_test_vs_ctrl_m6_site_distrib.png


; 2025-05-26.083614
$RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m6/peak-motifs_dyads_test_vs_ctrl_m6_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m6/peak-motifs_dyads_test_vs_ctrl_m6_sites_per_peak.tab


; 2025-05-26.083614
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m6/peak-motifs_dyads_test_vs_ctrl_m6_sites_per_peak.tab -lines -xcol 1 -ycol 4  -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : dyads_test_vs_ctrl_m6' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m6/peak-motifs_dyads_test_vs_ctrl_m6_sites_per_peak.png


; 2025-05-26.083614
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m7/peak-motifs_dyads_test_vs_ctrl_m7_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m7/peak-motifs_dyads_test_vs_ctrl_m7.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt  -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score  -lth score 7.5 -origin center -offset 200 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m7/peak-motifs_dyads_test_vs_ctrl_m7_sites.tab


; 2025-05-26.083615
grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m7/peak-motifs_dyads_test_vs_ctrl_m7_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m7/peak-motifs_dyads_test_vs_ctrl_m7_site_distrib.tab


; 2025-05-26.083615
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m7/peak-motifs_dyads_test_vs_ctrl_m7_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : dyads_test_vs_ctrl_m7' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m7/peak-motifs_dyads_test_vs_ctrl_m7_site_distrib.png


; 2025-05-26.083615
$RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m7/peak-motifs_dyads_test_vs_ctrl_m7_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m7/peak-motifs_dyads_test_vs_ctrl_m7_sites_per_peak.tab


; 2025-05-26.083615
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m7/peak-motifs_dyads_test_vs_ctrl_m7_sites_per_peak.tab -lines -xcol 1 -ycol 4  -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : dyads_test_vs_ctrl_m7' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m7/peak-motifs_dyads_test_vs_ctrl_m7_sites_per_peak.png


; 2025-05-26.083615
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m8/peak-motifs_dyads_test_vs_ctrl_m8_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m8/peak-motifs_dyads_test_vs_ctrl_m8.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt  -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score  -lth score 7.5 -origin center -offset 200 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m8/peak-motifs_dyads_test_vs_ctrl_m8_sites.tab


; 2025-05-26.083616
grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m8/peak-motifs_dyads_test_vs_ctrl_m8_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m8/peak-motifs_dyads_test_vs_ctrl_m8_site_distrib.tab


; 2025-05-26.083616
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m8/peak-motifs_dyads_test_vs_ctrl_m8_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : dyads_test_vs_ctrl_m8' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m8/peak-motifs_dyads_test_vs_ctrl_m8_site_distrib.png


; 2025-05-26.083617
$RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m8/peak-motifs_dyads_test_vs_ctrl_m8_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m8/peak-motifs_dyads_test_vs_ctrl_m8_sites_per_peak.tab


; 2025-05-26.083617
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m8/peak-motifs_dyads_test_vs_ctrl_m8_sites_per_peak.tab -lines -xcol 1 -ycol 4  -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : dyads_test_vs_ctrl_m8' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m8/peak-motifs_dyads_test_vs_ctrl_m8_sites_per_peak.png


; 2025-05-26.083617
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m9/peak-motifs_dyads_test_vs_ctrl_m9_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m9/peak-motifs_dyads_test_vs_ctrl_m9.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt  -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score  -lth score 7.5 -origin center -offset 200 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m9/peak-motifs_dyads_test_vs_ctrl_m9_sites.tab


; 2025-05-26.083618
grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m9/peak-motifs_dyads_test_vs_ctrl_m9_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m9/peak-motifs_dyads_test_vs_ctrl_m9_site_distrib.tab


; 2025-05-26.083618
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m9/peak-motifs_dyads_test_vs_ctrl_m9_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : dyads_test_vs_ctrl_m9' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m9/peak-motifs_dyads_test_vs_ctrl_m9_site_distrib.png


; 2025-05-26.083618
$RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m9/peak-motifs_dyads_test_vs_ctrl_m9_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m9/peak-motifs_dyads_test_vs_ctrl_m9_sites_per_peak.tab


; 2025-05-26.083618
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m9/peak-motifs_dyads_test_vs_ctrl_m9_sites_per_peak.tab -lines -xcol 1 -ycol 4  -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : dyads_test_vs_ctrl_m9' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m9/peak-motifs_dyads_test_vs_ctrl_m9_sites_per_peak.png


; 2025-05-26.083618
time -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m10/peak-motifs_dyads_test_vs_ctrl_m10_sites.tab_time.txt $RSAT/perl-scripts/matrix-scan -quick -v 1 -seq_format fasta -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test.fasta -matrix_format transfac -m $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m10/peak-motifs_dyads_test_vs_ctrl_m10.tf -bg_format inclusive -bgfile $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt  -pseudo 1 -2str -decimals 1 -bg_pseudo 0.01 -n score  -lth score 7.5 -origin center -offset 200 -return sites -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m10/peak-motifs_dyads_test_vs_ctrl_m10_sites.tab


; 2025-05-26.083619
grep -v '^;' $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m10/peak-motifs_dyads_test_vs_ctrl_m10_sites.tab | grep -v '^#' | awk '{print ($6+$5)/2}' | $RSAT/perl-scripts/classfreq -v 1 -ci 20 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m10/peak-motifs_dyads_test_vs_ctrl_m10_site_distrib.tab


; 2025-05-26.083619
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m10/peak-motifs_dyads_test_vs_ctrl_m10_site_distrib.tab -lines -xcol 3 -ycol 4 -ysize 250 -ycol 4 -yleg1 'Number of sites' -xsize 600 -xcol 3 -xleg1 'Position relative to sequence center' -xgstep2 20 -vline '#666666' 0 -title1 'Predicted sites : dyads_test_vs_ctrl_m10' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m10/peak-motifs_dyads_test_vs_ctrl_m10_site_distrib.png


; 2025-05-26.083619
$RSAT/perl-scripts/contingency-table -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m10/peak-motifs_dyads_test_vs_ctrl_m10_sites.tab | $RSAT/perl-scripts/classfreq -v 1 -ci 1 -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m10/peak-motifs_dyads_test_vs_ctrl_m10_sites_per_peak.tab


; 2025-05-26.083620
$RSAT/perl-scripts/XYgraph -format png -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m10/peak-motifs_dyads_test_vs_ctrl_m10_sites_per_peak.tab -lines -xcol 1 -ycol 4  -xsize 500 -xcol 1 -xleg1 'Number of sites' -ysize 250 -ycol 4,6 -yleg1 'Number of peaks' -legend -xgstep1 5 -xgstep2 1 -title1 'Nb predicted sites : dyads_test_vs_ctrl_m10' -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m10/peak-motifs_dyads_test_vs_ctrl_m10_sites_per_peak.png


; 2025-05-26.083620
cat $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m1/peak-motifs_oligos_6nt_test_vs_ctrl_m1_sites.tab $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m2/peak-motifs_oligos_6nt_test_vs_ctrl_m2_sites.tab $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m3/peak-motifs_oligos_6nt_test_vs_ctrl_m3_sites.tab $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m4/peak-motifs_oligos_6nt_test_vs_ctrl_m4_sites.tab $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m5/peak-motifs_oligos_6nt_test_vs_ctrl_m5_sites.tab $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m6/peak-motifs_oligos_6nt_test_vs_ctrl_m6_sites.tab $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m7/peak-motifs_oligos_6nt_test_vs_ctrl_m7_sites.tab $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m8/peak-motifs_oligos_6nt_test_vs_ctrl_m8_sites.tab $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m9/peak-motifs_oligos_6nt_test_vs_ctrl_m9_sites.tab $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m10/peak-motifs_oligos_6nt_test_vs_ctrl_m10_sites.tab $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m1/peak-motifs_oligos_7nt_test_vs_ctrl_m1_sites.tab $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m2/peak-motifs_oligos_7nt_test_vs_ctrl_m2_sites.tab $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m3/peak-motifs_oligos_7nt_test_vs_ctrl_m3_sites.tab $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m4/peak-motifs_oligos_7nt_test_vs_ctrl_m4_sites.tab $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m5/peak-motifs_oligos_7nt_test_vs_ctrl_m5_sites.tab $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m6/peak-motifs_oligos_7nt_test_vs_ctrl_m6_sites.tab $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m7/peak-motifs_oligos_7nt_test_vs_ctrl_m7_sites.tab $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m8/peak-motifs_oligos_7nt_test_vs_ctrl_m8_sites.tab $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m9/peak-motifs_oligos_7nt_test_vs_ctrl_m9_sites.tab $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m10/peak-motifs_oligos_7nt_test_vs_ctrl_m10_sites.tab 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$RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m1/peak-motifs_oligos_7nt_test_vs_ctrl_m1_sites.tab $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m2/peak-motifs_oligos_7nt_test_vs_ctrl_m2_sites.tab $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m3/peak-motifs_oligos_7nt_test_vs_ctrl_m3_sites.tab $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m4/peak-motifs_oligos_7nt_test_vs_ctrl_m4_sites.tab $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m5/peak-motifs_oligos_7nt_test_vs_ctrl_m5_sites.tab $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m6/peak-motifs_oligos_7nt_test_vs_ctrl_m6_sites.tab $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m7/peak-motifs_oligos_7nt_test_vs_ctrl_m7_sites.tab $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m8/peak-motifs_oligos_7nt_test_vs_ctrl_m8_sites.tab $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m9/peak-motifs_oligos_7nt_test_vs_ctrl_m9_sites.tab $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m10/peak-motifs_oligos_7nt_test_vs_ctrl_m10_sites.tab $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m1/peak-motifs_oligos_8nt_test_vs_ctrl_m1_sites.tab $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m2/peak-motifs_oligos_8nt_test_vs_ctrl_m2_sites.tab $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m3/peak-motifs_oligos_8nt_test_vs_ctrl_m3_sites.tab $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m4/peak-motifs_oligos_8nt_test_vs_ctrl_m4_sites.tab $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m5/peak-motifs_oligos_8nt_test_vs_ctrl_m5_sites.tab $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m6/peak-motifs_oligos_8nt_test_vs_ctrl_m6_sites.tab $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m7/peak-motifs_oligos_8nt_test_vs_ctrl_m7_sites.tab $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m8/peak-motifs_oligos_8nt_test_vs_ctrl_m8_sites.tab $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m9/peak-motifs_oligos_8nt_test_vs_ctrl_m9_sites.tab $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m10/peak-motifs_oligos_8nt_test_vs_ctrl_m10_sites.tab $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m1/peak-motifs_dyads_test_vs_ctrl_m1_sites.tab $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2_sites.tab $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m3/peak-motifs_dyads_test_vs_ctrl_m3_sites.tab $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4_sites.tab $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m5/peak-motifs_dyads_test_vs_ctrl_m5_sites.tab $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m6/peak-motifs_dyads_test_vs_ctrl_m6_sites.tab $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m7/peak-motifs_dyads_test_vs_ctrl_m7_sites.tab $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m8/peak-motifs_dyads_test_vs_ctrl_m8_sites.tab $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m9/peak-motifs_dyads_test_vs_ctrl_m9_sites.tab $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m10/peak-motifs_dyads_test_vs_ctrl_m10_sites.tab > $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/sites/peak-motifs_all_motifs_seqcoord.tab


; 2025-05-26.083620
$RSAT/perl-scripts/text-to-html -font variable -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/reports/peak-motifs_timelog.txt -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/reports/peak-motifs_timelog.html

; peak-motifs  -v 1 -title MEblack_Up3_W3 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/peak-motifspeak_seq -ctrl $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/peak-motifscontrol_seq -markov auto -disco oligos,dyads,positions -nmotifs 10 -minol 6 -maxol 8 -no_merge_lengths -2str -origin center -offset 200 -motif_db footprintDB-plants tf $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv
; Program version       	1.256
; Parameter values
;	seq_format            	fasta
;	img_format            	png
;	ref_motifs_format     	transfac
;	purge_match_length    	40
;	purge_mismatches      	3
;	origin                	center
;	offset                	200
;	profiles_ci           	20
;	profiles_max_graphs   	20
;	profiles_strand       	-1str
;	composition_oligo_lengths	1,2
;	profiles_noov         	-ovlp
;	strand                	-2str
;	disco_noov            	-noov
;	oligo_min_len         	6
;	oligo_max_len         	8
;	patterns_max_rank     	100
;	min_ratio             	1
;	min_zscore            	6
;	min_sig               	0
;	oligo_min_mkv         	auto
;	oligo_max_mkv         	auto
;	under_represented     	0
;	positions_max_graphs  	20
;	asmb_toppat           	100
;	max_asmb_width        	20
;	matrix_nmotifs        	10
; Input files
;	ctrl_seq              	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/peak-motifscontrol_seq
;	motif_db_footprintDB-plants	/var/www/html/rsat/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf
;	test_seq              	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/peak-motifspeak_seq
; Directories
;	output                        	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/
;	oligos_6nt_test_vs_ctrl_m1    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m1/
;	oligos_6nt_test_vs_ctrl_m2    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m2/
;	oligos_6nt_test_vs_ctrl_m3    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m3/
;	oligos_6nt_test_vs_ctrl_m4    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m4/
;	oligos_6nt_test_vs_ctrl_m5    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m5/
;	oligos_6nt_test_vs_ctrl_m6    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m6/
;	oligos_6nt_test_vs_ctrl_m7    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m7/
;	oligos_6nt_test_vs_ctrl_m8    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m8/
;	oligos_6nt_test_vs_ctrl_m9    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m9/
;	oligos_6nt_test_vs_ctrl_m10   	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m10/
;	oligos_7nt_test_vs_ctrl_m1    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m1/
;	oligos_7nt_test_vs_ctrl_m2    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m2/
;	oligos_7nt_test_vs_ctrl_m3    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m3/
;	oligos_7nt_test_vs_ctrl_m4    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m4/
;	oligos_7nt_test_vs_ctrl_m5    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m5/
;	oligos_7nt_test_vs_ctrl_m6    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m6/
;	oligos_7nt_test_vs_ctrl_m7    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m7/
;	oligos_7nt_test_vs_ctrl_m8    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m8/
;	oligos_7nt_test_vs_ctrl_m9    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m9/
;	oligos_7nt_test_vs_ctrl_m10   	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m10/
;	oligos_8nt_test_vs_ctrl_m1    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m1/
;	oligos_8nt_test_vs_ctrl_m2    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m2/
;	oligos_8nt_test_vs_ctrl_m3    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m3/
;	oligos_8nt_test_vs_ctrl_m4    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m4/
;	oligos_8nt_test_vs_ctrl_m5    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m5/
;	oligos_8nt_test_vs_ctrl_m6    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m6/
;	oligos_8nt_test_vs_ctrl_m7    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m7/
;	oligos_8nt_test_vs_ctrl_m8    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m8/
;	oligos_8nt_test_vs_ctrl_m9    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m9/
;	oligos_8nt_test_vs_ctrl_m10   	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m10/
;	dyads_test_vs_ctrl_m1         	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m1/
;	dyads_test_vs_ctrl_m2         	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m2/
;	dyads_test_vs_ctrl_m3         	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m3/
;	dyads_test_vs_ctrl_m4         	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m4/
;	dyads_test_vs_ctrl_m5         	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m5/
;	dyads_test_vs_ctrl_m6         	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m6/
;	dyads_test_vs_ctrl_m7         	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m7/
;	dyads_test_vs_ctrl_m8         	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m8/
;	dyads_test_vs_ctrl_m9         	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m9/
;	dyads_test_vs_ctrl_m10        	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m10/
; Output files
;	1nt_ctrl_freq                 	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_freq-1str-ovlp_1nt.tab
;	1nt_ctrl_heatmap              	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_heatmap-1str-ovlp_1nt.png
;	1nt_ctrl_inclusive            	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_inclusive-1str-ovlp_1nt.txt
;	1nt_ctrl_profiles             	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_1nt_ci20.tab
;	1nt_ctrl_profiles_graph       	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_1nt_ci20.png
;	1nt_ctrl_profiles_index       	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_1nt_ci20_graph_index.html
;	1nt_ctrl_transitions          	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_transitions-1str-ovlp_1nt.tab
;	1nt_test_freq                 	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_freq-1str-ovlp_1nt.tab
;	1nt_test_heatmap              	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_heatmap-1str-ovlp_1nt.png
;	1nt_test_inclusive            	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_1nt.txt
;	1nt_test_profiles             	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab
;	1nt_test_profiles_graph       	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.png
;	1nt_test_profiles_index       	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20_graph_index.html
;	1nt_test_transitions          	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_transitions-1str-ovlp_1nt.tab
;	2nt_ctrl_freq                 	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_freq-1str-ovlp_2nt.tab
;	2nt_ctrl_heatmap              	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_heatmap-1str-ovlp_2nt.png
;	2nt_ctrl_inclusive            	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_inclusive-1str-ovlp_2nt.txt
;	2nt_ctrl_profiles             	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_2nt_ci20.tab
;	2nt_ctrl_profiles_graph       	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_2nt_ci20.png
;	2nt_ctrl_profiles_index       	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_2nt_ci20_graph_index.html
;	2nt_ctrl_transitions          	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_transitions-1str-ovlp_2nt.tab
;	2nt_test_freq                 	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_freq-1str-ovlp_2nt.tab
;	2nt_test_heatmap              	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_heatmap-1str-ovlp_2nt.png
;	2nt_test_inclusive            	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	2nt_test_profiles             	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
;	2nt_test_profiles_graph       	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.png
;	2nt_test_profiles_index       	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20_graph_index.html
;	2nt_test_transitions          	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_transitions-1str-ovlp_2nt.tab
;	archive                       	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/peak-motifs_archive.zip
;	ctrl_converted                	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_ctrl.fasta
;	ctrl_purged                   	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_ctrl_purged_ml40_mis3.fasta
;	ctrl_seqlen                   	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_ctrl_seqlen.tab
;	ctrl_seqlen_distrib           	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_ctrl_seqlen_distrib.tab
;	ctrl_seqlen_distrib_graph     	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_ctrl_seqlen_distrib.png
;	dyads_test_vs_ctrl            	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/dyads_test_vs_ctrl/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads.tab
;	dyads_test_vs_ctrl_2pssm      	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/dyads_test_vs_ctrl/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_log.txt
;	dyads_test_vs_ctrl_asmb       	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/dyads_test_vs_ctrl/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm.asmb
;	dyads_test_vs_ctrl_bg_file    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/dyads_test_vs_ctrl/peak-motifs_dyads_bg_from_ctrl-2str-noov_3nt_sp0-20_bg_monads.tab
;	dyads_test_vs_ctrl_m10_logo   	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m10/peak-motifs_dyads_test_vs_ctrl_m10_logo.png
;	dyads_test_vs_ctrl_m10_logo_rc	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m10/peak-motifs_dyads_test_vs_ctrl_m10_logo_rc.png
;	dyads_test_vs_ctrl_m10_pssm_enrichment	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m10/peak-motifs_dyads_test_vs_ctrl_m10_scan_mkv1_enrichment.tab
;	dyads_test_vs_ctrl_m10_pssm_enrichment_png	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m10/peak-motifs_dyads_test_vs_ctrl_m10_scan_mkv1_enrichment.png
;	dyads_test_vs_ctrl_m10_pssm_site_distrib	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m10/peak-motifs_dyads_test_vs_ctrl_m10_site_distrib.tab
;	dyads_test_vs_ctrl_m10_pssm_site_distrib_graph	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m10/peak-motifs_dyads_test_vs_ctrl_m10_site_distrib.png
;	dyads_test_vs_ctrl_m10_pssm_sites	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m10/peak-motifs_dyads_test_vs_ctrl_m10_sites.tab
;	dyads_test_vs_ctrl_m10_pssm_sites_per_peak	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m10/peak-motifs_dyads_test_vs_ctrl_m10_sites_per_peak.tab
;	dyads_test_vs_ctrl_m10_pssm_sites_per_peak_graph	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m10/peak-motifs_dyads_test_vs_ctrl_m10_sites_per_peak.png
;	dyads_test_vs_ctrl_m10_tab    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m10/peak-motifs_dyads_test_vs_ctrl_m10.tab
;	dyads_test_vs_ctrl_m10_tf     	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m10/peak-motifs_dyads_test_vs_ctrl_m10.tf
;	dyads_test_vs_ctrl_m10_vs_db_footprintDB-plants	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m10/peak-motifs_dyads_test_vs_ctrl_m10_vs_db_footprintDB-plants.tab
;	dyads_test_vs_ctrl_m10_vs_db_footprintDB-plants_html	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m10/peak-motifs_dyads_test_vs_ctrl_m10_vs_db_footprintDB-plants.html
;	dyads_test_vs_ctrl_m10_vs_ref 	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m10/peak-motifs_dyads_test_vs_ctrl_m10_vs_ref.tab
;	dyads_test_vs_ctrl_m10_vs_ref_html	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m10/peak-motifs_dyads_test_vs_ctrl_m10_vs_ref.html
;	dyads_test_vs_ctrl_m1_logo    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m1/peak-motifs_dyads_test_vs_ctrl_m1_logo.png
;	dyads_test_vs_ctrl_m1_logo_rc 	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m1/peak-motifs_dyads_test_vs_ctrl_m1_logo_rc.png
;	dyads_test_vs_ctrl_m1_pssm_enrichment	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m1/peak-motifs_dyads_test_vs_ctrl_m1_scan_mkv1_enrichment.tab
;	dyads_test_vs_ctrl_m1_pssm_enrichment_png	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m1/peak-motifs_dyads_test_vs_ctrl_m1_scan_mkv1_enrichment.png
;	dyads_test_vs_ctrl_m1_pssm_site_distrib	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m1/peak-motifs_dyads_test_vs_ctrl_m1_site_distrib.tab
;	dyads_test_vs_ctrl_m1_pssm_site_distrib_graph	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m1/peak-motifs_dyads_test_vs_ctrl_m1_site_distrib.png
;	dyads_test_vs_ctrl_m1_pssm_sites	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m1/peak-motifs_dyads_test_vs_ctrl_m1_sites.tab
;	dyads_test_vs_ctrl_m1_pssm_sites_per_peak	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m1/peak-motifs_dyads_test_vs_ctrl_m1_sites_per_peak.tab
;	dyads_test_vs_ctrl_m1_pssm_sites_per_peak_graph	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m1/peak-motifs_dyads_test_vs_ctrl_m1_sites_per_peak.png
;	dyads_test_vs_ctrl_m1_tab     	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m1/peak-motifs_dyads_test_vs_ctrl_m1.tab
;	dyads_test_vs_ctrl_m1_tf      	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m1/peak-motifs_dyads_test_vs_ctrl_m1.tf
;	dyads_test_vs_ctrl_m1_vs_db_footprintDB-plants	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m1/peak-motifs_dyads_test_vs_ctrl_m1_vs_db_footprintDB-plants.tab
;	dyads_test_vs_ctrl_m1_vs_db_footprintDB-plants_html	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m1/peak-motifs_dyads_test_vs_ctrl_m1_vs_db_footprintDB-plants.html
;	dyads_test_vs_ctrl_m1_vs_ref  	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m1/peak-motifs_dyads_test_vs_ctrl_m1_vs_ref.tab
;	dyads_test_vs_ctrl_m1_vs_ref_html	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m1/peak-motifs_dyads_test_vs_ctrl_m1_vs_ref.html
;	dyads_test_vs_ctrl_m2_logo    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2_logo.png
;	dyads_test_vs_ctrl_m2_logo_rc 	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2_logo_rc.png
;	dyads_test_vs_ctrl_m2_pssm_enrichment	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2_scan_mkv1_enrichment.tab
;	dyads_test_vs_ctrl_m2_pssm_enrichment_png	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2_scan_mkv1_enrichment.png
;	dyads_test_vs_ctrl_m2_pssm_site_distrib	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2_site_distrib.tab
;	dyads_test_vs_ctrl_m2_pssm_site_distrib_graph	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2_site_distrib.png
;	dyads_test_vs_ctrl_m2_pssm_sites	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2_sites.tab
;	dyads_test_vs_ctrl_m2_pssm_sites_per_peak	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2_sites_per_peak.tab
;	dyads_test_vs_ctrl_m2_pssm_sites_per_peak_graph	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2_sites_per_peak.png
;	dyads_test_vs_ctrl_m2_tab     	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2.tab
;	dyads_test_vs_ctrl_m2_tf      	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2.tf
;	dyads_test_vs_ctrl_m2_vs_db_footprintDB-plants	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2_vs_db_footprintDB-plants.tab
;	dyads_test_vs_ctrl_m2_vs_db_footprintDB-plants_html	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2_vs_db_footprintDB-plants.html
;	dyads_test_vs_ctrl_m2_vs_ref  	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2_vs_ref.tab
;	dyads_test_vs_ctrl_m2_vs_ref_html	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2_vs_ref.html
;	dyads_test_vs_ctrl_m3_logo    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m3/peak-motifs_dyads_test_vs_ctrl_m3_logo.png
;	dyads_test_vs_ctrl_m3_logo_rc 	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m3/peak-motifs_dyads_test_vs_ctrl_m3_logo_rc.png
;	dyads_test_vs_ctrl_m3_pssm_enrichment	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m3/peak-motifs_dyads_test_vs_ctrl_m3_scan_mkv1_enrichment.tab
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;	dyads_test_vs_ctrl_m3_pssm_site_distrib	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m3/peak-motifs_dyads_test_vs_ctrl_m3_site_distrib.tab
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;	dyads_test_vs_ctrl_m3_pssm_sites	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m3/peak-motifs_dyads_test_vs_ctrl_m3_sites.tab
;	dyads_test_vs_ctrl_m3_pssm_sites_per_peak	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m3/peak-motifs_dyads_test_vs_ctrl_m3_sites_per_peak.tab
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;	dyads_test_vs_ctrl_m3_tab     	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m3/peak-motifs_dyads_test_vs_ctrl_m3.tab
;	dyads_test_vs_ctrl_m3_tf      	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m3/peak-motifs_dyads_test_vs_ctrl_m3.tf
;	dyads_test_vs_ctrl_m3_vs_db_footprintDB-plants	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m3/peak-motifs_dyads_test_vs_ctrl_m3_vs_db_footprintDB-plants.tab
;	dyads_test_vs_ctrl_m3_vs_db_footprintDB-plants_html	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m3/peak-motifs_dyads_test_vs_ctrl_m3_vs_db_footprintDB-plants.html
;	dyads_test_vs_ctrl_m3_vs_ref  	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m3/peak-motifs_dyads_test_vs_ctrl_m3_vs_ref.tab
;	dyads_test_vs_ctrl_m3_vs_ref_html	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m3/peak-motifs_dyads_test_vs_ctrl_m3_vs_ref.html
;	dyads_test_vs_ctrl_m4_logo    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4_logo.png
;	dyads_test_vs_ctrl_m4_logo_rc 	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4_logo_rc.png
;	dyads_test_vs_ctrl_m4_pssm_enrichment	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4_scan_mkv1_enrichment.tab
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;	dyads_test_vs_ctrl_m4_pssm_site_distrib	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4_site_distrib.tab
;	dyads_test_vs_ctrl_m4_pssm_site_distrib_graph	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4_site_distrib.png
;	dyads_test_vs_ctrl_m4_pssm_sites	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4_sites.tab
;	dyads_test_vs_ctrl_m4_pssm_sites_per_peak	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4_sites_per_peak.tab
;	dyads_test_vs_ctrl_m4_pssm_sites_per_peak_graph	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4_sites_per_peak.png
;	dyads_test_vs_ctrl_m4_tab     	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4.tab
;	dyads_test_vs_ctrl_m4_tf      	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4.tf
;	dyads_test_vs_ctrl_m4_vs_db_footprintDB-plants	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4_vs_db_footprintDB-plants.tab
;	dyads_test_vs_ctrl_m4_vs_db_footprintDB-plants_html	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4_vs_db_footprintDB-plants.html
;	dyads_test_vs_ctrl_m4_vs_ref  	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4_vs_ref.tab
;	dyads_test_vs_ctrl_m4_vs_ref_html	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4_vs_ref.html
;	dyads_test_vs_ctrl_m5_logo    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m5/peak-motifs_dyads_test_vs_ctrl_m5_logo.png
;	dyads_test_vs_ctrl_m5_logo_rc 	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m5/peak-motifs_dyads_test_vs_ctrl_m5_logo_rc.png
;	dyads_test_vs_ctrl_m5_pssm_enrichment	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m5/peak-motifs_dyads_test_vs_ctrl_m5_scan_mkv1_enrichment.tab
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;	dyads_test_vs_ctrl_m5_pssm_site_distrib	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m5/peak-motifs_dyads_test_vs_ctrl_m5_site_distrib.tab
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;	dyads_test_vs_ctrl_m5_pssm_sites	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m5/peak-motifs_dyads_test_vs_ctrl_m5_sites.tab
;	dyads_test_vs_ctrl_m5_pssm_sites_per_peak	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m5/peak-motifs_dyads_test_vs_ctrl_m5_sites_per_peak.tab
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;	dyads_test_vs_ctrl_m5_tf      	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m5/peak-motifs_dyads_test_vs_ctrl_m5.tf
;	dyads_test_vs_ctrl_m5_vs_db_footprintDB-plants	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m5/peak-motifs_dyads_test_vs_ctrl_m5_vs_db_footprintDB-plants.tab
;	dyads_test_vs_ctrl_m5_vs_db_footprintDB-plants_html	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m5/peak-motifs_dyads_test_vs_ctrl_m5_vs_db_footprintDB-plants.html
;	dyads_test_vs_ctrl_m5_vs_ref  	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m5/peak-motifs_dyads_test_vs_ctrl_m5_vs_ref.tab
;	dyads_test_vs_ctrl_m5_vs_ref_html	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m5/peak-motifs_dyads_test_vs_ctrl_m5_vs_ref.html
;	dyads_test_vs_ctrl_m6_logo    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m6/peak-motifs_dyads_test_vs_ctrl_m6_logo.png
;	dyads_test_vs_ctrl_m6_logo_rc 	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m6/peak-motifs_dyads_test_vs_ctrl_m6_logo_rc.png
;	dyads_test_vs_ctrl_m6_pssm_enrichment	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m6/peak-motifs_dyads_test_vs_ctrl_m6_scan_mkv1_enrichment.tab
;	dyads_test_vs_ctrl_m6_pssm_enrichment_png	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m6/peak-motifs_dyads_test_vs_ctrl_m6_scan_mkv1_enrichment.png
;	dyads_test_vs_ctrl_m6_pssm_site_distrib	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m6/peak-motifs_dyads_test_vs_ctrl_m6_site_distrib.tab
;	dyads_test_vs_ctrl_m6_pssm_site_distrib_graph	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m6/peak-motifs_dyads_test_vs_ctrl_m6_site_distrib.png
;	dyads_test_vs_ctrl_m6_pssm_sites	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m6/peak-motifs_dyads_test_vs_ctrl_m6_sites.tab
;	dyads_test_vs_ctrl_m6_pssm_sites_per_peak	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m6/peak-motifs_dyads_test_vs_ctrl_m6_sites_per_peak.tab
;	dyads_test_vs_ctrl_m6_pssm_sites_per_peak_graph	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m6/peak-motifs_dyads_test_vs_ctrl_m6_sites_per_peak.png
;	dyads_test_vs_ctrl_m6_tab     	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m6/peak-motifs_dyads_test_vs_ctrl_m6.tab
;	dyads_test_vs_ctrl_m6_tf      	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m6/peak-motifs_dyads_test_vs_ctrl_m6.tf
;	dyads_test_vs_ctrl_m6_vs_db_footprintDB-plants	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m6/peak-motifs_dyads_test_vs_ctrl_m6_vs_db_footprintDB-plants.tab
;	dyads_test_vs_ctrl_m6_vs_db_footprintDB-plants_html	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m6/peak-motifs_dyads_test_vs_ctrl_m6_vs_db_footprintDB-plants.html
;	dyads_test_vs_ctrl_m6_vs_ref  	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m6/peak-motifs_dyads_test_vs_ctrl_m6_vs_ref.tab
;	dyads_test_vs_ctrl_m6_vs_ref_html	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m6/peak-motifs_dyads_test_vs_ctrl_m6_vs_ref.html
;	dyads_test_vs_ctrl_m7_logo    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m7/peak-motifs_dyads_test_vs_ctrl_m7_logo.png
;	dyads_test_vs_ctrl_m7_logo_rc 	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m7/peak-motifs_dyads_test_vs_ctrl_m7_logo_rc.png
;	dyads_test_vs_ctrl_m7_pssm_enrichment	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m7/peak-motifs_dyads_test_vs_ctrl_m7_scan_mkv1_enrichment.tab
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;	dyads_test_vs_ctrl_m7_pssm_site_distrib	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m7/peak-motifs_dyads_test_vs_ctrl_m7_site_distrib.tab
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;	dyads_test_vs_ctrl_m7_pssm_sites	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m7/peak-motifs_dyads_test_vs_ctrl_m7_sites.tab
;	dyads_test_vs_ctrl_m7_pssm_sites_per_peak	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m7/peak-motifs_dyads_test_vs_ctrl_m7_sites_per_peak.tab
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;	dyads_test_vs_ctrl_m7_tab     	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m7/peak-motifs_dyads_test_vs_ctrl_m7.tab
;	dyads_test_vs_ctrl_m7_tf      	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m7/peak-motifs_dyads_test_vs_ctrl_m7.tf
;	dyads_test_vs_ctrl_m7_vs_db_footprintDB-plants	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m7/peak-motifs_dyads_test_vs_ctrl_m7_vs_db_footprintDB-plants.tab
;	dyads_test_vs_ctrl_m7_vs_db_footprintDB-plants_html	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m7/peak-motifs_dyads_test_vs_ctrl_m7_vs_db_footprintDB-plants.html
;	dyads_test_vs_ctrl_m7_vs_ref  	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m7/peak-motifs_dyads_test_vs_ctrl_m7_vs_ref.tab
;	dyads_test_vs_ctrl_m7_vs_ref_html	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m7/peak-motifs_dyads_test_vs_ctrl_m7_vs_ref.html
;	dyads_test_vs_ctrl_m8_logo    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m8/peak-motifs_dyads_test_vs_ctrl_m8_logo.png
;	dyads_test_vs_ctrl_m8_logo_rc 	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m8/peak-motifs_dyads_test_vs_ctrl_m8_logo_rc.png
;	dyads_test_vs_ctrl_m8_pssm_enrichment	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m8/peak-motifs_dyads_test_vs_ctrl_m8_scan_mkv1_enrichment.tab
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;	dyads_test_vs_ctrl_m8_pssm_site_distrib	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m8/peak-motifs_dyads_test_vs_ctrl_m8_site_distrib.tab
;	dyads_test_vs_ctrl_m8_pssm_site_distrib_graph	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m8/peak-motifs_dyads_test_vs_ctrl_m8_site_distrib.png
;	dyads_test_vs_ctrl_m8_pssm_sites	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m8/peak-motifs_dyads_test_vs_ctrl_m8_sites.tab
;	dyads_test_vs_ctrl_m8_pssm_sites_per_peak	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m8/peak-motifs_dyads_test_vs_ctrl_m8_sites_per_peak.tab
;	dyads_test_vs_ctrl_m8_pssm_sites_per_peak_graph	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m8/peak-motifs_dyads_test_vs_ctrl_m8_sites_per_peak.png
;	dyads_test_vs_ctrl_m8_tab     	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m8/peak-motifs_dyads_test_vs_ctrl_m8.tab
;	dyads_test_vs_ctrl_m8_tf      	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m8/peak-motifs_dyads_test_vs_ctrl_m8.tf
;	dyads_test_vs_ctrl_m8_vs_db_footprintDB-plants	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m8/peak-motifs_dyads_test_vs_ctrl_m8_vs_db_footprintDB-plants.tab
;	dyads_test_vs_ctrl_m8_vs_db_footprintDB-plants_html	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m8/peak-motifs_dyads_test_vs_ctrl_m8_vs_db_footprintDB-plants.html
;	dyads_test_vs_ctrl_m8_vs_ref  	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m8/peak-motifs_dyads_test_vs_ctrl_m8_vs_ref.tab
;	dyads_test_vs_ctrl_m8_vs_ref_html	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m8/peak-motifs_dyads_test_vs_ctrl_m8_vs_ref.html
;	dyads_test_vs_ctrl_m9_logo    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m9/peak-motifs_dyads_test_vs_ctrl_m9_logo.png
;	dyads_test_vs_ctrl_m9_logo_rc 	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m9/peak-motifs_dyads_test_vs_ctrl_m9_logo_rc.png
;	dyads_test_vs_ctrl_m9_pssm_enrichment	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m9/peak-motifs_dyads_test_vs_ctrl_m9_scan_mkv1_enrichment.tab
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;	dyads_test_vs_ctrl_m9_pssm_site_distrib	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m9/peak-motifs_dyads_test_vs_ctrl_m9_site_distrib.tab
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;	dyads_test_vs_ctrl_m9_pssm_sites	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m9/peak-motifs_dyads_test_vs_ctrl_m9_sites.tab
;	dyads_test_vs_ctrl_m9_pssm_sites_per_peak	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m9/peak-motifs_dyads_test_vs_ctrl_m9_sites_per_peak.tab
;	dyads_test_vs_ctrl_m9_pssm_sites_per_peak_graph	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m9/peak-motifs_dyads_test_vs_ctrl_m9_sites_per_peak.png
;	dyads_test_vs_ctrl_m9_tab     	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m9/peak-motifs_dyads_test_vs_ctrl_m9.tab
;	dyads_test_vs_ctrl_m9_tf      	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m9/peak-motifs_dyads_test_vs_ctrl_m9.tf
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;	oligos_8nt_test_vs_ctrl_m8_pssm_sites_per_peak	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m8/peak-motifs_oligos_8nt_test_vs_ctrl_m8_sites_per_peak.tab
;	oligos_8nt_test_vs_ctrl_m8_pssm_sites_per_peak_graph	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m8/peak-motifs_oligos_8nt_test_vs_ctrl_m8_sites_per_peak.png
;	oligos_8nt_test_vs_ctrl_m8_tab	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m8/peak-motifs_oligos_8nt_test_vs_ctrl_m8.tab
;	oligos_8nt_test_vs_ctrl_m8_tf 	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m8/peak-motifs_oligos_8nt_test_vs_ctrl_m8.tf
;	oligos_8nt_test_vs_ctrl_m8_vs_db_footprintDB-plants	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m8/peak-motifs_oligos_8nt_test_vs_ctrl_m8_vs_db_footprintDB-plants.tab
;	oligos_8nt_test_vs_ctrl_m8_vs_db_footprintDB-plants_html	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m8/peak-motifs_oligos_8nt_test_vs_ctrl_m8_vs_db_footprintDB-plants.html
;	oligos_8nt_test_vs_ctrl_m8_vs_ref	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m8/peak-motifs_oligos_8nt_test_vs_ctrl_m8_vs_ref.tab
;	oligos_8nt_test_vs_ctrl_m8_vs_ref_html	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m8/peak-motifs_oligos_8nt_test_vs_ctrl_m8_vs_ref.html
;	oligos_8nt_test_vs_ctrl_m9_logo	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m9/peak-motifs_oligos_8nt_test_vs_ctrl_m9_logo.png
;	oligos_8nt_test_vs_ctrl_m9_logo_rc	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m9/peak-motifs_oligos_8nt_test_vs_ctrl_m9_logo_rc.png
;	oligos_8nt_test_vs_ctrl_m9_pssm_enrichment	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m9/peak-motifs_oligos_8nt_test_vs_ctrl_m9_scan_mkv1_enrichment.tab
;	oligos_8nt_test_vs_ctrl_m9_pssm_enrichment_png	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m9/peak-motifs_oligos_8nt_test_vs_ctrl_m9_scan_mkv1_enrichment.png
;	oligos_8nt_test_vs_ctrl_m9_pssm_site_distrib	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m9/peak-motifs_oligos_8nt_test_vs_ctrl_m9_site_distrib.tab
;	oligos_8nt_test_vs_ctrl_m9_pssm_site_distrib_graph	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m9/peak-motifs_oligos_8nt_test_vs_ctrl_m9_site_distrib.png
;	oligos_8nt_test_vs_ctrl_m9_pssm_sites	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m9/peak-motifs_oligos_8nt_test_vs_ctrl_m9_sites.tab
;	oligos_8nt_test_vs_ctrl_m9_pssm_sites_per_peak	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m9/peak-motifs_oligos_8nt_test_vs_ctrl_m9_sites_per_peak.tab
;	oligos_8nt_test_vs_ctrl_m9_pssm_sites_per_peak_graph	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m9/peak-motifs_oligos_8nt_test_vs_ctrl_m9_sites_per_peak.png
;	oligos_8nt_test_vs_ctrl_m9_tab	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m9/peak-motifs_oligos_8nt_test_vs_ctrl_m9.tab
;	oligos_8nt_test_vs_ctrl_m9_tf 	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m9/peak-motifs_oligos_8nt_test_vs_ctrl_m9.tf
;	oligos_8nt_test_vs_ctrl_m9_vs_db_footprintDB-plants	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m9/peak-motifs_oligos_8nt_test_vs_ctrl_m9_vs_db_footprintDB-plants.tab
;	oligos_8nt_test_vs_ctrl_m9_vs_db_footprintDB-plants_html	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m9/peak-motifs_oligos_8nt_test_vs_ctrl_m9_vs_db_footprintDB-plants.html
;	oligos_8nt_test_vs_ctrl_m9_vs_ref	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m9/peak-motifs_oligos_8nt_test_vs_ctrl_m9_vs_ref.tab
;	oligos_8nt_test_vs_ctrl_m9_vs_ref_html	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m9/peak-motifs_oligos_8nt_test_vs_ctrl_m9_vs_ref.html
;	oligos_8nt_test_vs_ctrl_pssm_counts	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_8nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_8nt_test_vs_ctrl_pssm_count_matrices.txt
;	oligos_8nt_test_vs_ctrl_pssm_logo1	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_8nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_8nt_test_vs_ctrl_pssm_count_matrices_logo_m1.png
;	oligos_8nt_test_vs_ctrl_pssm_logo10	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_8nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_8nt_test_vs_ctrl_pssm_count_matrices_logo_m10.png
;	oligos_8nt_test_vs_ctrl_pssm_logo2	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_8nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_8nt_test_vs_ctrl_pssm_count_matrices_logo_m2.png
;	oligos_8nt_test_vs_ctrl_pssm_logo3	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_8nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_8nt_test_vs_ctrl_pssm_count_matrices_logo_m3.png
;	oligos_8nt_test_vs_ctrl_pssm_logo4	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_8nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_8nt_test_vs_ctrl_pssm_count_matrices_logo_m4.png
;	oligos_8nt_test_vs_ctrl_pssm_logo5	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_8nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_8nt_test_vs_ctrl_pssm_count_matrices_logo_m5.png
;	oligos_8nt_test_vs_ctrl_pssm_logo6	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_8nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_8nt_test_vs_ctrl_pssm_count_matrices_logo_m6.png
;	oligos_8nt_test_vs_ctrl_pssm_logo7	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_8nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_8nt_test_vs_ctrl_pssm_count_matrices_logo_m7.png
;	oligos_8nt_test_vs_ctrl_pssm_logo8	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_8nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_8nt_test_vs_ctrl_pssm_count_matrices_logo_m8.png
;	oligos_8nt_test_vs_ctrl_pssm_logo9	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_8nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_8nt_test_vs_ctrl_pssm_count_matrices_logo_m9.png
;	oligos_8nt_test_vs_ctrl_pssm_logo_rc1	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_8nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_8nt_test_vs_ctrl_pssm_count_matrices_logo_m1_rc.png
;	oligos_8nt_test_vs_ctrl_pssm_logo_rc10	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_8nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_8nt_test_vs_ctrl_pssm_count_matrices_logo_m10_rc.png
;	oligos_8nt_test_vs_ctrl_pssm_logo_rc2	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_8nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_8nt_test_vs_ctrl_pssm_count_matrices_logo_m2_rc.png
;	oligos_8nt_test_vs_ctrl_pssm_logo_rc3	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_8nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_8nt_test_vs_ctrl_pssm_count_matrices_logo_m3_rc.png
;	oligos_8nt_test_vs_ctrl_pssm_logo_rc4	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_8nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_8nt_test_vs_ctrl_pssm_count_matrices_logo_m4_rc.png
;	oligos_8nt_test_vs_ctrl_pssm_logo_rc5	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_8nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_8nt_test_vs_ctrl_pssm_count_matrices_logo_m5_rc.png
;	oligos_8nt_test_vs_ctrl_pssm_logo_rc6	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_8nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_8nt_test_vs_ctrl_pssm_count_matrices_logo_m6_rc.png
;	oligos_8nt_test_vs_ctrl_pssm_logo_rc7	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_8nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_8nt_test_vs_ctrl_pssm_count_matrices_logo_m7_rc.png
;	oligos_8nt_test_vs_ctrl_pssm_logo_rc8	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_8nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_8nt_test_vs_ctrl_pssm_count_matrices_logo_m8_rc.png
;	oligos_8nt_test_vs_ctrl_pssm_logo_rc9	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_8nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_8nt_test_vs_ctrl_pssm_count_matrices_logo_m9_rc.png
;	oligos_8nt_test_vs_ctrl_pssm_sig	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_8nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_8nt_test_vs_ctrl_pssm_sig_matrices.tf
;	oligos_8nt_test_vs_ctrl_pssm_tf	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_8nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_8nt_test_vs_ctrl_pssm_count_matrices.tf
;	small_summary                 	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/peak-motifs_small_summary.html
;	small_summary_txt             	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/reports/peak-motifs_small_summary.txt
;	synthesis                     	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/peak-motifs_synthesis.html
;	test_converted                	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test.fasta
;	test_purged                   	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test_purged_ml40_mis3.fasta
;	test_seqlen                   	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test_seqlen.tab
;	test_seqlen_distrib           	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test_seqlen_distrib.tab
;	test_seqlen_distrib_graph     	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test_seqlen_distrib.png
;	timelog                       	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/reports/peak-motifs_timelog.txt
;	timelog_html                  	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/reports/peak-motifs_timelog.html
;	timetable                     	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/reports/peak-motifs_timetable.txt

; 2025-05-26.083620
(cd $RSAT/public_html/tmp/www-data/2025/05/26 ;  zip -ryq peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/peak-motifs_archive.zip peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv -x peak-motifs_archive.zip)


; 2025-05-26.083637
rsync -ruptl $RSAT/perl-scripts/lib/images/arrow*.gif $RSAT/perl-scripts/lib/images/UCSC_icon.jpg  $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/images_html

; peak-motifs  -v 1 -title MEblack_Up3_W3 -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/peak-motifspeak_seq -ctrl $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/peak-motifscontrol_seq -markov auto -disco oligos,dyads,positions -nmotifs 10 -minol 6 -maxol 8 -no_merge_lengths -2str -origin center -offset 200 -motif_db footprintDB-plants tf $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -scan_markov 1 -task purge,seqlen,composition,disco,merge_motifs,split_motifs,motifs_vs_motifs,timelog,archive,synthesis,small_summary,motifs_vs_db,scan -prefix peak-motifs -noov -img_format png -outdir $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv
; Program version       	1.256
; Parameter values
;	seq_format            	fasta
;	img_format            	png
;	ref_motifs_format     	transfac
;	purge_match_length    	40
;	purge_mismatches      	3
;	origin                	center
;	offset                	200
;	profiles_ci           	20
;	profiles_max_graphs   	20
;	profiles_strand       	-1str
;	composition_oligo_lengths	1,2
;	profiles_noov         	-ovlp
;	strand                	-2str
;	disco_noov            	-noov
;	oligo_min_len         	6
;	oligo_max_len         	8
;	patterns_max_rank     	100
;	min_ratio             	1
;	min_zscore            	6
;	min_sig               	0
;	oligo_min_mkv         	auto
;	oligo_max_mkv         	auto
;	under_represented     	0
;	positions_max_graphs  	20
;	asmb_toppat           	100
;	max_asmb_width        	20
;	matrix_nmotifs        	10
; Input files
;	ctrl_seq              	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/peak-motifscontrol_seq
;	motif_db_footprintDB-plants	/var/www/html/rsat/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf
;	test_seq              	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/peak-motifspeak_seq
; Directories
;	output                        	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/
;	oligos_6nt_test_vs_ctrl_m1    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m1/
;	oligos_6nt_test_vs_ctrl_m2    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m2/
;	oligos_6nt_test_vs_ctrl_m3    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m3/
;	oligos_6nt_test_vs_ctrl_m4    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m4/
;	oligos_6nt_test_vs_ctrl_m5    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m5/
;	oligos_6nt_test_vs_ctrl_m6    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m6/
;	oligos_6nt_test_vs_ctrl_m7    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m7/
;	oligos_6nt_test_vs_ctrl_m8    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m8/
;	oligos_6nt_test_vs_ctrl_m9    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m9/
;	oligos_6nt_test_vs_ctrl_m10   	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_6nt_test_vs_ctrl_m10/
;	oligos_7nt_test_vs_ctrl_m1    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m1/
;	oligos_7nt_test_vs_ctrl_m2    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m2/
;	oligos_7nt_test_vs_ctrl_m3    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m3/
;	oligos_7nt_test_vs_ctrl_m4    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m4/
;	oligos_7nt_test_vs_ctrl_m5    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m5/
;	oligos_7nt_test_vs_ctrl_m6    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m6/
;	oligos_7nt_test_vs_ctrl_m7    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m7/
;	oligos_7nt_test_vs_ctrl_m8    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m8/
;	oligos_7nt_test_vs_ctrl_m9    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m9/
;	oligos_7nt_test_vs_ctrl_m10   	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_7nt_test_vs_ctrl_m10/
;	oligos_8nt_test_vs_ctrl_m1    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m1/
;	oligos_8nt_test_vs_ctrl_m2    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m2/
;	oligos_8nt_test_vs_ctrl_m3    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m3/
;	oligos_8nt_test_vs_ctrl_m4    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m4/
;	oligos_8nt_test_vs_ctrl_m5    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m5/
;	oligos_8nt_test_vs_ctrl_m6    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m6/
;	oligos_8nt_test_vs_ctrl_m7    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m7/
;	oligos_8nt_test_vs_ctrl_m8    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m8/
;	oligos_8nt_test_vs_ctrl_m9    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m9/
;	oligos_8nt_test_vs_ctrl_m10   	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/oligos_8nt_test_vs_ctrl_m10/
;	dyads_test_vs_ctrl_m1         	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m1/
;	dyads_test_vs_ctrl_m2         	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m2/
;	dyads_test_vs_ctrl_m3         	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m3/
;	dyads_test_vs_ctrl_m4         	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m4/
;	dyads_test_vs_ctrl_m5         	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m5/
;	dyads_test_vs_ctrl_m6         	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m6/
;	dyads_test_vs_ctrl_m7         	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m7/
;	dyads_test_vs_ctrl_m8         	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m8/
;	dyads_test_vs_ctrl_m9         	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m9/
;	dyads_test_vs_ctrl_m10        	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m10/
; Output files
;	1nt_ctrl_freq                 	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_freq-1str-ovlp_1nt.tab
;	1nt_ctrl_heatmap              	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_heatmap-1str-ovlp_1nt.png
;	1nt_ctrl_inclusive            	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_inclusive-1str-ovlp_1nt.txt
;	1nt_ctrl_profiles             	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_1nt_ci20.tab
;	1nt_ctrl_profiles_graph       	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_1nt_ci20.png
;	1nt_ctrl_profiles_index       	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_1nt_ci20_graph_index.html
;	1nt_ctrl_transitions          	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_transitions-1str-ovlp_1nt.tab
;	1nt_test_freq                 	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_freq-1str-ovlp_1nt.tab
;	1nt_test_heatmap              	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_heatmap-1str-ovlp_1nt.png
;	1nt_test_inclusive            	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_1nt.txt
;	1nt_test_profiles             	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.tab
;	1nt_test_profiles_graph       	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20.png
;	1nt_test_profiles_index       	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_profiles-1str-ovlp_1nt_ci20_graph_index.html
;	1nt_test_transitions          	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_transitions-1str-ovlp_1nt.tab
;	2nt_ctrl_freq                 	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_freq-1str-ovlp_2nt.tab
;	2nt_ctrl_heatmap              	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_heatmap-1str-ovlp_2nt.png
;	2nt_ctrl_inclusive            	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_inclusive-1str-ovlp_2nt.txt
;	2nt_ctrl_profiles             	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_2nt_ci20.tab
;	2nt_ctrl_profiles_graph       	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_2nt_ci20.png
;	2nt_ctrl_profiles_index       	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_profiles-1str-ovlp_2nt_ci20_graph_index.html
;	2nt_ctrl_transitions          	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_ctrl_transitions-1str-ovlp_2nt.tab
;	2nt_test_freq                 	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_freq-1str-ovlp_2nt.tab
;	2nt_test_heatmap              	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_heatmap-1str-ovlp_2nt.png
;	2nt_test_inclusive            	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_inclusive-1str-ovlp_2nt.txt
;	2nt_test_profiles             	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.tab
;	2nt_test_profiles_graph       	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20.png
;	2nt_test_profiles_index       	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_profiles-1str-ovlp_2nt_ci20_graph_index.html
;	2nt_test_transitions          	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/composition/peak-motifs_test_transitions-1str-ovlp_2nt.tab
;	archive                       	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/peak-motifs_archive.zip
;	ctrl_converted                	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_ctrl.fasta
;	ctrl_purged                   	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_ctrl_purged_ml40_mis3.fasta
;	ctrl_seqlen                   	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_ctrl_seqlen.tab
;	ctrl_seqlen_distrib           	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_ctrl_seqlen_distrib.tab
;	ctrl_seqlen_distrib_graph     	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_ctrl_seqlen_distrib.png
;	dyads_test_vs_ctrl            	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/dyads_test_vs_ctrl/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads.tab
;	dyads_test_vs_ctrl_2pssm      	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/dyads_test_vs_ctrl/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm_log.txt
;	dyads_test_vs_ctrl_asmb       	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/dyads_test_vs_ctrl/peak-motifs_dyads-2str-noov_3nt_sp0-20_bg_monads_pssm.asmb
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;	dyads_test_vs_ctrl_m10_logo_rc	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m10/peak-motifs_dyads_test_vs_ctrl_m10_logo_rc.png
;	dyads_test_vs_ctrl_m10_pssm_enrichment	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m10/peak-motifs_dyads_test_vs_ctrl_m10_scan_mkv1_enrichment.tab
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;	dyads_test_vs_ctrl_m10_pssm_site_distrib	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m10/peak-motifs_dyads_test_vs_ctrl_m10_site_distrib.tab
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;	dyads_test_vs_ctrl_m10_pssm_sites	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m10/peak-motifs_dyads_test_vs_ctrl_m10_sites.tab
;	dyads_test_vs_ctrl_m10_pssm_sites_per_peak	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m10/peak-motifs_dyads_test_vs_ctrl_m10_sites_per_peak.tab
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;	dyads_test_vs_ctrl_m10_vs_db_footprintDB-plants	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m10/peak-motifs_dyads_test_vs_ctrl_m10_vs_db_footprintDB-plants.tab
;	dyads_test_vs_ctrl_m10_vs_db_footprintDB-plants_html	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m10/peak-motifs_dyads_test_vs_ctrl_m10_vs_db_footprintDB-plants.html
;	dyads_test_vs_ctrl_m10_vs_ref 	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m10/peak-motifs_dyads_test_vs_ctrl_m10_vs_ref.tab
;	dyads_test_vs_ctrl_m10_vs_ref_html	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m10/peak-motifs_dyads_test_vs_ctrl_m10_vs_ref.html
;	dyads_test_vs_ctrl_m1_logo    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m1/peak-motifs_dyads_test_vs_ctrl_m1_logo.png
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;	dyads_test_vs_ctrl_m1_pssm_enrichment	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m1/peak-motifs_dyads_test_vs_ctrl_m1_scan_mkv1_enrichment.tab
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;	dyads_test_vs_ctrl_m1_vs_ref_html	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m1/peak-motifs_dyads_test_vs_ctrl_m1_vs_ref.html
;	dyads_test_vs_ctrl_m2_logo    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2_logo.png
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;	dyads_test_vs_ctrl_m2_tab     	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2.tab
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;	dyads_test_vs_ctrl_m2_vs_db_footprintDB-plants_html	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2_vs_db_footprintDB-plants.html
;	dyads_test_vs_ctrl_m2_vs_ref  	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2_vs_ref.tab
;	dyads_test_vs_ctrl_m2_vs_ref_html	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m2/peak-motifs_dyads_test_vs_ctrl_m2_vs_ref.html
;	dyads_test_vs_ctrl_m3_logo    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m3/peak-motifs_dyads_test_vs_ctrl_m3_logo.png
;	dyads_test_vs_ctrl_m3_logo_rc 	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m3/peak-motifs_dyads_test_vs_ctrl_m3_logo_rc.png
;	dyads_test_vs_ctrl_m3_pssm_enrichment	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m3/peak-motifs_dyads_test_vs_ctrl_m3_scan_mkv1_enrichment.tab
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;	dyads_test_vs_ctrl_m3_vs_ref_html	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m3/peak-motifs_dyads_test_vs_ctrl_m3_vs_ref.html
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;	dyads_test_vs_ctrl_m4_pssm_enrichment	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4_scan_mkv1_enrichment.tab
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;	dyads_test_vs_ctrl_m4_pssm_site_distrib	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4_site_distrib.tab
;	dyads_test_vs_ctrl_m4_pssm_site_distrib_graph	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4_site_distrib.png
;	dyads_test_vs_ctrl_m4_pssm_sites	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4_sites.tab
;	dyads_test_vs_ctrl_m4_pssm_sites_per_peak	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4_sites_per_peak.tab
;	dyads_test_vs_ctrl_m4_pssm_sites_per_peak_graph	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4_sites_per_peak.png
;	dyads_test_vs_ctrl_m4_tab     	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4.tab
;	dyads_test_vs_ctrl_m4_tf      	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4.tf
;	dyads_test_vs_ctrl_m4_vs_db_footprintDB-plants	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4_vs_db_footprintDB-plants.tab
;	dyads_test_vs_ctrl_m4_vs_db_footprintDB-plants_html	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4_vs_db_footprintDB-plants.html
;	dyads_test_vs_ctrl_m4_vs_ref  	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4_vs_ref.tab
;	dyads_test_vs_ctrl_m4_vs_ref_html	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m4/peak-motifs_dyads_test_vs_ctrl_m4_vs_ref.html
;	dyads_test_vs_ctrl_m5_logo    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m5/peak-motifs_dyads_test_vs_ctrl_m5_logo.png
;	dyads_test_vs_ctrl_m5_logo_rc 	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m5/peak-motifs_dyads_test_vs_ctrl_m5_logo_rc.png
;	dyads_test_vs_ctrl_m5_pssm_enrichment	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m5/peak-motifs_dyads_test_vs_ctrl_m5_scan_mkv1_enrichment.tab
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;	dyads_test_vs_ctrl_m5_pssm_site_distrib	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m5/peak-motifs_dyads_test_vs_ctrl_m5_site_distrib.tab
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;	dyads_test_vs_ctrl_m5_pssm_sites	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m5/peak-motifs_dyads_test_vs_ctrl_m5_sites.tab
;	dyads_test_vs_ctrl_m5_pssm_sites_per_peak	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m5/peak-motifs_dyads_test_vs_ctrl_m5_sites_per_peak.tab
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;	dyads_test_vs_ctrl_m5_tab     	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m5/peak-motifs_dyads_test_vs_ctrl_m5.tab
;	dyads_test_vs_ctrl_m5_tf      	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m5/peak-motifs_dyads_test_vs_ctrl_m5.tf
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;	dyads_test_vs_ctrl_m5_vs_db_footprintDB-plants_html	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m5/peak-motifs_dyads_test_vs_ctrl_m5_vs_db_footprintDB-plants.html
;	dyads_test_vs_ctrl_m5_vs_ref  	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m5/peak-motifs_dyads_test_vs_ctrl_m5_vs_ref.tab
;	dyads_test_vs_ctrl_m5_vs_ref_html	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m5/peak-motifs_dyads_test_vs_ctrl_m5_vs_ref.html
;	dyads_test_vs_ctrl_m6_logo    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m6/peak-motifs_dyads_test_vs_ctrl_m6_logo.png
;	dyads_test_vs_ctrl_m6_logo_rc 	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m6/peak-motifs_dyads_test_vs_ctrl_m6_logo_rc.png
;	dyads_test_vs_ctrl_m6_pssm_enrichment	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m6/peak-motifs_dyads_test_vs_ctrl_m6_scan_mkv1_enrichment.tab
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;	dyads_test_vs_ctrl_m6_pssm_site_distrib	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m6/peak-motifs_dyads_test_vs_ctrl_m6_site_distrib.tab
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;	dyads_test_vs_ctrl_m6_pssm_sites	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m6/peak-motifs_dyads_test_vs_ctrl_m6_sites.tab
;	dyads_test_vs_ctrl_m6_pssm_sites_per_peak	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m6/peak-motifs_dyads_test_vs_ctrl_m6_sites_per_peak.tab
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;	dyads_test_vs_ctrl_m6_tab     	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m6/peak-motifs_dyads_test_vs_ctrl_m6.tab
;	dyads_test_vs_ctrl_m6_tf      	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m6/peak-motifs_dyads_test_vs_ctrl_m6.tf
;	dyads_test_vs_ctrl_m6_vs_db_footprintDB-plants	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m6/peak-motifs_dyads_test_vs_ctrl_m6_vs_db_footprintDB-plants.tab
;	dyads_test_vs_ctrl_m6_vs_db_footprintDB-plants_html	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m6/peak-motifs_dyads_test_vs_ctrl_m6_vs_db_footprintDB-plants.html
;	dyads_test_vs_ctrl_m6_vs_ref  	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m6/peak-motifs_dyads_test_vs_ctrl_m6_vs_ref.tab
;	dyads_test_vs_ctrl_m6_vs_ref_html	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m6/peak-motifs_dyads_test_vs_ctrl_m6_vs_ref.html
;	dyads_test_vs_ctrl_m7_logo    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m7/peak-motifs_dyads_test_vs_ctrl_m7_logo.png
;	dyads_test_vs_ctrl_m7_logo_rc 	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m7/peak-motifs_dyads_test_vs_ctrl_m7_logo_rc.png
;	dyads_test_vs_ctrl_m7_pssm_enrichment	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m7/peak-motifs_dyads_test_vs_ctrl_m7_scan_mkv1_enrichment.tab
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;	dyads_test_vs_ctrl_m7_pssm_site_distrib	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m7/peak-motifs_dyads_test_vs_ctrl_m7_site_distrib.tab
;	dyads_test_vs_ctrl_m7_pssm_site_distrib_graph	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m7/peak-motifs_dyads_test_vs_ctrl_m7_site_distrib.png
;	dyads_test_vs_ctrl_m7_pssm_sites	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m7/peak-motifs_dyads_test_vs_ctrl_m7_sites.tab
;	dyads_test_vs_ctrl_m7_pssm_sites_per_peak	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m7/peak-motifs_dyads_test_vs_ctrl_m7_sites_per_peak.tab
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;	dyads_test_vs_ctrl_m7_tab     	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m7/peak-motifs_dyads_test_vs_ctrl_m7.tab
;	dyads_test_vs_ctrl_m7_tf      	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m7/peak-motifs_dyads_test_vs_ctrl_m7.tf
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;	dyads_test_vs_ctrl_m7_vs_db_footprintDB-plants_html	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m7/peak-motifs_dyads_test_vs_ctrl_m7_vs_db_footprintDB-plants.html
;	dyads_test_vs_ctrl_m7_vs_ref  	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m7/peak-motifs_dyads_test_vs_ctrl_m7_vs_ref.tab
;	dyads_test_vs_ctrl_m7_vs_ref_html	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m7/peak-motifs_dyads_test_vs_ctrl_m7_vs_ref.html
;	dyads_test_vs_ctrl_m8_logo    	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m8/peak-motifs_dyads_test_vs_ctrl_m8_logo.png
;	dyads_test_vs_ctrl_m8_logo_rc 	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m8/peak-motifs_dyads_test_vs_ctrl_m8_logo_rc.png
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;	dyads_test_vs_ctrl_m8_vs_ref_html	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/discovered_motifs/dyads_test_vs_ctrl_m8/peak-motifs_dyads_test_vs_ctrl_m8_vs_ref.html
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;	oligos_8nt_test_vs_ctrl_pssm_logo_rc2	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_8nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_8nt_test_vs_ctrl_pssm_count_matrices_logo_m2_rc.png
;	oligos_8nt_test_vs_ctrl_pssm_logo_rc3	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_8nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_8nt_test_vs_ctrl_pssm_count_matrices_logo_m3_rc.png
;	oligos_8nt_test_vs_ctrl_pssm_logo_rc4	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_8nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_8nt_test_vs_ctrl_pssm_count_matrices_logo_m4_rc.png
;	oligos_8nt_test_vs_ctrl_pssm_logo_rc5	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_8nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_8nt_test_vs_ctrl_pssm_count_matrices_logo_m5_rc.png
;	oligos_8nt_test_vs_ctrl_pssm_logo_rc6	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_8nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_8nt_test_vs_ctrl_pssm_count_matrices_logo_m6_rc.png
;	oligos_8nt_test_vs_ctrl_pssm_logo_rc7	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_8nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_8nt_test_vs_ctrl_pssm_count_matrices_logo_m7_rc.png
;	oligos_8nt_test_vs_ctrl_pssm_logo_rc8	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_8nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_8nt_test_vs_ctrl_pssm_count_matrices_logo_m8_rc.png
;	oligos_8nt_test_vs_ctrl_pssm_logo_rc9	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_8nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_8nt_test_vs_ctrl_pssm_count_matrices_logo_m9_rc.png
;	oligos_8nt_test_vs_ctrl_pssm_sig	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_8nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_8nt_test_vs_ctrl_pssm_sig_matrices.tf
;	oligos_8nt_test_vs_ctrl_pssm_tf	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/results/oligos_8nt_test_vs_ctrl/peak-motifs_oligos-2str-noov_8nt_test_vs_ctrl_pssm_count_matrices.tf
;	small_summary                 	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/peak-motifs_small_summary.html
;	small_summary_txt             	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/reports/peak-motifs_small_summary.txt
;	synthesis                     	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/peak-motifs_synthesis.html
;	test_converted                	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test.fasta
;	test_purged                   	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test_purged_ml40_mis3.fasta
;	test_seqlen                   	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test_seqlen.tab
;	test_seqlen_distrib           	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test_seqlen_distrib.tab
;	test_seqlen_distrib_graph     	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/data/sequences/peak-motifs_test_seqlen_distrib.png
;	timelog                       	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/reports/peak-motifs_timelog.txt
;	timelog_html                  	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/reports/peak-motifs_timelog.html
;	timetable                     	/var/www/html/rsat/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/reports/peak-motifs_timetable.txt

; 2025-05-26.083638
(cd $RSAT/public_html/tmp/www-data/2025/05/26 ;  zip -ryq peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/peak-motifs_archive.zip peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/peak-motifs_synthesis.html -x peak-motifs_archive.zip)


; 2025-05-26.083638
$RSAT/perl-scripts/text-to-html -i $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/reports/peak-motifs_small_summary.txt -no_sort  -o $RSAT/public_html/tmp/www-data/2025/05/26/peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/peak-motifs_small_summary.html


; 2025-05-26.083638
(cd $RSAT/public_html/tmp/www-data/2025/05/26 ;  zip -ryq peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/peak-motifs_archive.zip peak-motifs.2025-05-26.081610_2025-05-26.081610_0u0IUv/peak-motifs_small_summary.html -x peak-motifs_archive.zip)

; Host name	rsat
; Job started	2025-05-26.081611
; Job done	2025-05-26.083638
; Seconds	1.02
;	user	1.02
;	system	0.96
;	cuser	1196.57
;	csystem	37.45