peak-motifs MEgreenyellow_Up3

Motif discovery

Motif 1 oligos_6nt_test_vs_ctrl_m1

k-mer sig=21.24; evalue=5.8e-22

rbtCaGATCtGart

AYTCAGATCTGAVY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rbtCaGATCtGart

GATA4.DAP:M0287:AthalianaCistrome GATA4.DAP/M0287/AthalianaCistrome D 14 0.9333 0.882 0.824 NA NA

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome R 13 0.8667 0.899 0.779 NA NA

GATA11.DAP:M0284:AthalianaCistrome GATA11.DAP/M0284/AthalianaCistrome D 13 0.8125 0.915 0.744 NA NA

Total matches= 45 (42 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 81 (8.34%)
Max nb of predicted sites per peak: 8
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.94

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_test_vs_ctrl_m2

k-mer sig=21.24; evalue=5.8e-22

wytCAGATCtrarw

WYTYAGATCTGARW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wytCAGATCtrarw

GATA4.DAP:M0287:AthalianaCistrome GATA4.DAP/M0287/AthalianaCistrome R 14 0.9333 0.873 0.815 NA NA

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome R 13 0.8667 0.899 0.779 NA NA

GATA11.DAP:M0284:AthalianaCistrome GATA11.DAP/M0284/AthalianaCistrome R 13 0.8125 0.936 0.760 NA NA

Total matches= 54 (51 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 107 (11.02%)
Max nb of predicted sites per peak: 7
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.33

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_test_vs_ctrl_m3

k-mer sig=3.59; evalue=0.00026

kgCCaCGtGGsr

YSCCACGTGGCM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kgCCaCGtGGsr

O11:MA1816.1:JASPAR O11/MA1816.1/JASPAR R 12 1.0000 0.874 0.874 NA NA

ABF4:MA1659.1:JASPAR ABF4/MA1659.1/JASPAR R 12 1.0000 0.874 0.874 NA NA

HY5:MA0551.2:JASPAR HY5/MA0551.2/JASPAR D 12 1.0000 0.857 0.857 NA NA

Total matches= 236 (233 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 105 (10.81%)
Max nb of predicted sites per peak: 6
(gene-Lalb_Chr21g0309481)
Mean nb of predicted sites per peak: 2.06

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_test_vs_ctrl_m4

k-mer sig=2.10; evalue=0.0079

cmATCTCAty

RATGAGATKG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cmATCTCAty

fgenesh1_pg.C_Chr_07.0001000042:M0808_1.02:CISBP fgenesh1_pg.C_Chr_07.0001000042/M0808_1.02/CISBP D 10 1.0000 0.739 0.739 NA NA

TIFY2A:M0760_1.02:CISBP TIFY2A/M0760_1.02/CISBP R 7 0.7000 0.800 0.560 NA NA

ARR1:MA0945.2:JASPAR ARR1/MA0945.2/JASPAR D 6 0.6000 0.909 0.545 NA NA

Total matches= 40 (37 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 217 (22.35%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr25g0289571)
Mean nb of predicted sites per peak: 1.18

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_test_vs_ctrl_m5

k-mer sig=2.09; evalue=0.0081

rvACaGaGar

YTCTCTGTBY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rvACaGaGar

REF6:MA1415.1:JASPAR REF6/MA1415.1/JASPAR D 10 0.9091 0.913 0.830 NA NA

REF6:MA1415.2:JASPAR REF6/MA1415.2/JASPAR D 8 0.7273 0.930 0.676 NA NA

Lysine-specific:6jnm_A:3D-footprint Lysine-specific/6jnm_A/3D-footprint R 7 0.7000 0.886 0.620 NA NA

Total matches= 13 (10 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 191 (19.67%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr02g0146021)
Mean nb of predicted sites per peak: 1.17

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 oligos_6nt_test_vs_ctrl_m6

k-mer sig=21.24; evalue=5.8e-22

yytCaGATCCra

TYGGATCTGARR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yytCaGATCCra

GATA12.DAP:M0285:AthalianaCistrome GATA12.DAP/M0285/AthalianaCistrome D 12 0.9231 0.864 0.797 NA NA

GATA19:MA1323.1:JASPAR GATA19/MA1323.1/JASPAR R 11 0.9167 0.827 0.758 NA NA

GATA19.ampDAP:M0295:AthalianaCistrome GATA19.ampDAP/M0295/AthalianaCistrome R 11 0.9167 0.817 0.749 NA NA

Total matches= 66 (63 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 122 (12.56%)
Max nb of predicted sites per peak: 7
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.22

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 oligos_6nt_test_vs_ctrl_m7

k-mer sig=1.44; evalue=0.036

gsTtaATaAaAsg

CSTTTTATTAASC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gsTtaATaAaAsg

ATHB23.ampDAP:M0855:AthalianaCistrome ATHB23.ampDAP/M0855/AthalianaCistrome R 11 0.8462 0.732 0.619 NA NA

ZHD10:MA1807.1:JASPAR ZHD10/MA1807.1/JASPAR R 11 0.8462 0.732 0.619 NA NA

ATHB24:MA1330.1:JASPAR ATHB24/MA1330.1/JASPAR R 13 0.8667 0.700 0.607 NA NA

Total matches= 41 (38 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 29 (2.99%)
Max nb of predicted sites per peak: 1
(gene-Lalb_Chr23g0277901)
Mean nb of predicted sites per peak: 1.00

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_6nt_test_vs_ctrl_m8

k-mer sig=1.08; evalue=0.083

mrACACaGwg

CWCTGTGTYK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mrACACaGwg

Lysine-specific:6jnm_A:3D-footprint Lysine-specific/6jnm_A/3D-footprint R 7 0.7000 0.894 0.626 NA NA

REF6:MA1415.2:JASPAR REF6/MA1415.2/JASPAR D 8 0.7273 0.712 0.518 NA NA

REM1:REM1_2:ArabidopsisPBM REM1/REM1_2/ArabidopsisPBM R 8 0.6667 0.740 0.494 NA NA

Total matches= 13 (10 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 176 (18.13%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr02g0148861)
Mean nb of predicted sites per peak: 1.11

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 oligos_6nt_test_vs_ctrl_m9

k-mer sig=0.99; evalue=0.1

yyaTTCaCtCtcy

RGAGAGTGAATRR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yyaTTCaCtCtcy

AT3G46070:MA1381.1:JASPAR AT3G46070/MA1381.1/JASPAR D 13 0.8667 0.829 0.718 NA NA

AZF1:MA2372.1:JASPAR AZF1/MA2372.1/JASPAR D 9 0.6923 0.841 0.582 NA NA

At5g04390.DAP:M0308:AthalianaCistrome At5g04390.DAP/M0308/AthalianaCistrome R 10 0.7143 0.785 0.561 NA NA

Total matches= 14 (11 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 137 (14.11%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr22g0355851)
Mean nb of predicted sites per peak: 1.07

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_6nt_test_vs_ctrl_m10

k-mer sig=0.85; evalue=0.14

msCGtTAahr

YDTTAACGSK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor msCGtTAahr

OBP4:M0655_1.02:CISBP OBP4/M0655_1.02/CISBP R 10 1.0000 0.895 0.895 NA NA

DOF5.7:DOF5.7_2:ArabidopsisPBM DOF5.7/DOF5.7_2/ArabidopsisPBM D 10 1.0000 0.885 0.885 NA NA

MYB52:MYB52:ArabidopsisPBM MYB52/MYB52/ArabidopsisPBM R 10 1.0000 0.774 0.774 NA NA

Total matches= 72 (69 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 124 (12.77%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr24g0402841)
Mean nb of predicted sites per peak: 1.07

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_7nt_test_vs_ctrl_m1

k-mer sig=22.04; evalue=9.1e-23

rwtCaGATCtGart

AYTCAGATCTGAWY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rwtCaGATCtGart

GATA4.DAP:M0287:AthalianaCistrome GATA4.DAP/M0287/AthalianaCistrome D 14 0.9333 0.869 0.811 NA NA

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome R 13 0.8667 0.891 0.772 NA NA

GATA11.DAP:M0284:AthalianaCistrome GATA11.DAP/M0284/AthalianaCistrome D 13 0.8125 0.903 0.734 NA NA

Total matches= 41 (38 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 73 (7.52%)
Max nb of predicted sites per peak: 6
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.93

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_7nt_test_vs_ctrl_m2

k-mer sig=22.04; evalue=9.1e-23

wttCaGATCtrawts

SAWTYAGATCTGAAW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wttCaGATCtrawts

GATA4.DAP:M0287:AthalianaCistrome GATA4.DAP/M0287/AthalianaCistrome D 15 1.0000 0.843 0.843 NA NA

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome R 14 0.9333 0.886 0.827 NA NA

GATA11.DAP:M0284:AthalianaCistrome GATA11.DAP/M0284/AthalianaCistrome R 14 0.8750 0.920 0.805 NA NA

Total matches= 42 (39 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 106 (10.92%)
Max nb of predicted sites per peak: 7
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.32

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 oligos_7nt_test_vs_ctrl_m3

k-mer sig=17.31; evalue=4.9e-18

byTCAGATCCrwa

TWYGGATCTGARV

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor byTCAGATCCrwa

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome D 13 0.9286 0.783 0.727 NA NA

GATA12.DAP:M0285:AthalianaCistrome GATA12.DAP/M0285/AthalianaCistrome D 12 0.8571 0.838 0.719 NA NA

GATA4.DAP:M0287:AthalianaCistrome GATA4.DAP/M0287/AthalianaCistrome R 13 0.8667 0.826 0.716 NA NA

Total matches= 57 (54 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 102 (10.50%)
Max nb of predicted sites per peak: 7
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.19

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 oligos_7nt_test_vs_ctrl_m4

k-mer sig=22.04; evalue=9.1e-23

dkwCaGATCtGard

HYTCAGATCTGWMH

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor dkwCaGATCtGard

GATA4.DAP:M0287:AthalianaCistrome GATA4.DAP/M0287/AthalianaCistrome D 14 0.9333 0.864 0.807 NA NA

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome R 13 0.8667 0.871 0.755 NA NA

GATA11.DAP:M0284:AthalianaCistrome GATA11.DAP/M0284/AthalianaCistrome D 13 0.8125 0.905 0.735 NA NA

Total matches= 48 (45 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 89 (9.17%)
Max nb of predicted sites per peak: 7
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.55

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 oligos_7nt_test_vs_ctrl_m5

k-mer sig=1.07; evalue=0.085

rrASAGAGArr

YYTCTCTSTYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrASAGAGArr

CURE3UTR1:EEAD0076:EEADannot CURE3UTR1/EEAD0076/EEADannot R 10 0.9091 0.784 0.713 NA NA

REF6:MA1415.1:JASPAR REF6/MA1415.1/JASPAR D 10 0.8333 0.834 0.695 NA NA

REF6:MA1415.2:JASPAR REF6/MA1415.2/JASPAR D 8 0.6667 0.921 0.614 NA NA

Total matches= 14 (11 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 260 (26.78%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr06g0169411)
Mean nb of predicted sites per peak: 1.52

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 16 oligos_7nt_test_vs_ctrl_m6

k-mer sig=1.05; evalue=0.089

atCtGAatCtr

YAGATTCAGAT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor atCtGAatCtr

AT1G25550:M1320_1.02:CISBP AT1G25550/M1320_1.02/CISBP R 10 0.9091 0.753 0.684 NA NA

LOC_Os02g22020:M1363_1.02:CISBP LOC_Os02g22020/M1363_1.02/CISBP R 10 0.9091 0.747 0.679 NA NA

AT1G68670:M1321_1.02:CISBP AT1G68670/M1321_1.02/CISBP D 10 0.9091 0.735 0.669 NA NA

Total matches= 43 (40 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 70 (7.21%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.13

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 17 oligos_7nt_test_vs_ctrl_m7

k-mer sig=0.86; evalue=0.14

ytAtCTCaThm

KDATGAGATAR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ytAtCTCaThm

TIFY2A:M0760_1.02:CISBP TIFY2A/M0760_1.02/CISBP R 7 0.6364 0.773 0.492 NA NA

ARR1:MA0945.2:JASPAR ARR1/MA0945.2/JASPAR D 6 0.5455 0.892 0.486 NA NA

ARR10:MA0121.2:JASPAR ARR10/MA0121.2/JASPAR R 6 0.5000 0.922 0.461 NA NA

Total matches= 19 (16 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 147 (15.14%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr02g0150121)
Mean nb of predicted sites per peak: 1.12

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 18 oligos_7nt_test_vs_ctrl_m8

k-mer sig=0.69; evalue=0.2

bsACGTGGCar

YTGCCACGTSV

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor bsACGTGGCar

bZIP44:bZIP63_1:EEAD0122:EEADannot bZIP44:bZIP63_1/EEAD0122/EEADannot D 10 0.9091 0.965 0.877 NA NA

BZIP68:MA0968.3:JASPAR BZIP68/MA0968.3/JASPAR R 10 0.9091 0.964 0.877 NA NA

bZIP11:bZIP9_1:EEAD0112:EEADannot bZIP11:bZIP9_1/EEAD0112/EEADannot D 10 0.9091 0.964 0.877 NA NA

Total matches= 298 (295 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 158 (16.27%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr22g0360831)
Mean nb of predicted sites per peak: 1.32

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 19 oligos_7nt_test_vs_ctrl_m9

k-mer sig=0.64; evalue=0.23

rrGaGAGaGarr

YYTCTCTCTCYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrGaGAGaGarr

CURE3UTR1:EEAD0076:EEADannot CURE3UTR1/EEAD0076/EEADannot R 10 0.8333 0.947 0.789 NA NA

BPC1.ampDAP:M0149:AthalianaCistrome BPC1.ampDAP/M0149/AthalianaCistrome R 12 0.8000 0.920 0.736 NA NA

REF6:MA1415.2:JASPAR REF6/MA1415.2/JASPAR D 9 0.7500 0.707 0.530 NA NA

Total matches= 10 (7 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 286 (29.45%)
Max nb of predicted sites per peak: 14
(gene-Lalb_Chr19g0127331)
Mean nb of predicted sites per peak: 1.97

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 20 oligos_7nt_test_vs_ctrl_m10

k-mer sig=22.04; evalue=9.1e-23

aytCaGATCtamrt

AYKTAGATCTGART

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor aytCaGATCtamrt

GATA4.DAP:M0287:AthalianaCistrome GATA4.DAP/M0287/AthalianaCistrome R 14 0.9333 0.865 0.807 NA NA

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome D 13 0.8667 0.879 0.762 NA NA

GATA11.DAP:M0284:AthalianaCistrome GATA11.DAP/M0284/AthalianaCistrome R 13 0.8125 0.929 0.755 NA NA

Total matches= 49 (46 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 116 (11.95%)
Max nb of predicted sites per peak: 7
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.23

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 21 oligos_8nt_test_vs_ctrl_m1

k-mer sig=17.06; evalue=8.7e-18

rattCaGATCtGaawc

GWTTCAGATCTGAATY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rattCaGATCtGaawc

GATA4.DAP:M0287:AthalianaCistrome GATA4.DAP/M0287/AthalianaCistrome R 15 0.9375 0.863 0.809 NA NA

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome D 14 0.8750 0.884 0.773 NA NA

GATA11.DAP:M0284:AthalianaCistrome GATA11.DAP/M0284/AthalianaCistrome D 14 0.8235 0.896 0.738 NA NA

Total matches= 34 (31 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 73 (7.52%)
Max nb of predicted sites per peak: 8
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.95

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 22 oligos_8nt_test_vs_ctrl_m2

k-mer sig=17.06; evalue=8.7e-18

kwtTCaGATCtaaaw

WTTTAGATCTGAAWM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kwtTCaGATCtaaaw

GATA4.DAP:M0287:AthalianaCistrome GATA4.DAP/M0287/AthalianaCistrome R 15 1.0000 0.826 0.826 NA NA

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome D 14 0.9333 0.847 0.791 NA NA

GATA12.DAP:M0285:AthalianaCistrome GATA12.DAP/M0285/AthalianaCistrome D 13 0.8667 0.887 0.769 NA NA

Total matches= 40 (37 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 93 (9.58%)
Max nb of predicted sites per peak: 7
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.32

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 23 oligos_8nt_test_vs_ctrl_m3

k-mer sig=5.62; evalue=2.4e-06

kgttCaGAtCCaaah

DTTTGGATCTGAACM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kgttCaGAtCCaaah

GATA4.DAP:M0287:AthalianaCistrome GATA4.DAP/M0287/AthalianaCistrome R 15 1.0000 0.799 0.799 NA NA

GATA12.DAP:M0285:AthalianaCistrome GATA12.DAP/M0285/AthalianaCistrome D 13 0.8667 0.843 0.731 NA NA

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome D 14 0.9333 0.761 0.710 NA NA

Total matches= 38 (35 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 102 (10.50%)
Max nb of predicted sites per peak: 7
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.14

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 24 oligos_8nt_test_vs_ctrl_m4

k-mer sig=4.65; evalue=2.2e-05

rrttaGatCtaakt

AMTTAGATCTAAYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrttaGatCtaakt

GATA4.DAP:M0287:AthalianaCistrome GATA4.DAP/M0287/AthalianaCistrome R 14 0.9333 0.792 0.740 NA NA

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome R 13 0.8667 0.840 0.728 NA NA

GATA14:MA1325.1:JASPAR GATA14/MA1325.1/JASPAR R 13 0.8125 0.862 0.700 NA NA

Total matches= 34 (31 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 47 (4.84%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr23g0267771)
Mean nb of predicted sites per peak: 1.72

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 25 oligos_8nt_test_vs_ctrl_m5

k-mer sig=17.06; evalue=8.7e-18

rdctCaGATCtGaawc

GWTTCAGATCTGAGHY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rdctCaGATCtGaawc

GATA4.DAP:M0287:AthalianaCistrome GATA4.DAP/M0287/AthalianaCistrome D 15 0.9375 0.854 0.801 NA NA

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome R 14 0.8750 0.874 0.765 NA NA

GATA11.DAP:M0284:AthalianaCistrome GATA11.DAP/M0284/AthalianaCistrome R 14 0.8235 0.905 0.746 NA NA

Total matches= 33 (30 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 82 (8.44%)
Max nb of predicted sites per peak: 8
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.65

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 26 oligos_8nt_test_vs_ctrl_m6

k-mer sig=17.06; evalue=8.7e-18

gdcaCaGATCTGaady

RHTTCAGATCTGTGHC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gdcaCaGATCTGaady

GATA4.DAP:M0287:AthalianaCistrome GATA4.DAP/M0287/AthalianaCistrome D 15 0.9375 0.851 0.798 NA NA

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome R 14 0.8750 0.862 0.754 NA NA

GATA11.DAP:M0284:AthalianaCistrome GATA11.DAP/M0284/AthalianaCistrome D 14 0.8235 0.879 0.724 NA NA

Total matches= 38 (35 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 93 (9.58%)
Max nb of predicted sites per peak: 7
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.35

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 27 oligos_8nt_test_vs_ctrl_m7

k-mer sig=17.06; evalue=8.7e-18

gattCAGATCtrraw

WTYYAGATCTGAATC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gattCAGATCtrraw

GATA4.DAP:M0287:AthalianaCistrome GATA4.DAP/M0287/AthalianaCistrome R 15 1.0000 0.864 0.864 NA NA

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome D 14 0.9333 0.878 0.820 NA NA

GATA12.DAP:M0285:AthalianaCistrome GATA12.DAP/M0285/AthalianaCistrome D 13 0.8667 0.900 0.780 NA NA

Total matches= 41 (38 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 97 (9.99%)
Max nb of predicted sites per peak: 7
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.31

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 28 oligos_8nt_test_vs_ctrl_m8

k-mer sig=17.06; evalue=8.7e-18

rmtTCaGATCTsrm

KYSAGATCTGAAKY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rmtTCaGATCTsrm

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome D 14 1.0000 0.857 0.857 NA NA

GATA12.DAP:M0285:AthalianaCistrome GATA12.DAP/M0285/AthalianaCistrome D 13 0.9286 0.874 0.812 NA NA

GATA4.DAP:M0287:AthalianaCistrome GATA4.DAP/M0287/AthalianaCistrome R 14 0.9333 0.843 0.786 NA NA

Total matches= 53 (50 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 94 (9.68%)
Max nb of predicted sites per peak: 8
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.27

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 29 oligos_8nt_test_vs_ctrl_m9

k-mer sig=17.06; evalue=8.7e-18

gdttCaGATCtGaadc

GHTTCAGATCTGAAHC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gdttCaGATCtGaadc

GATA4.DAP:M0287:AthalianaCistrome GATA4.DAP/M0287/AthalianaCistrome D 15 0.9375 0.848 0.795 NA NA

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome D 14 0.8750 0.870 0.761 NA NA

GATA11.DAP:M0284:AthalianaCistrome GATA11.DAP/M0284/AthalianaCistrome R 14 0.8235 0.895 0.737 NA NA

Total matches= 33 (30 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 92 (9.47%)
Max nb of predicted sites per peak: 7
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.58

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 30 oligos_8nt_test_vs_ctrl_m10

k-mer sig=17.06; evalue=8.7e-18

rwttCAGaTCtGrrw

WYYCAGATCTGAAWY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rwttCAGaTCtGrrw

GATA4.DAP:M0287:AthalianaCistrome GATA4.DAP/M0287/AthalianaCistrome R 15 1.0000 0.871 0.871 NA NA

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome D 14 0.9333 0.882 0.824 NA NA

GATA11.DAP:M0284:AthalianaCistrome GATA11.DAP/M0284/AthalianaCistrome D 14 0.8750 0.892 0.780 NA NA

Total matches= 46 (43 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 95 (9.78%)
Max nb of predicted sites per peak: 7
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.47

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 31 dyads_test_vs_ctrl_m1

k-mer sig=21.17; evalue=6.8e-22

rbtCaGATCtGart

AYTCAGATCTGAVY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rbtCaGATCtGart

GATA4.DAP:M0287:AthalianaCistrome GATA4.DAP/M0287/AthalianaCistrome D 14 0.9333 0.882 0.823 NA NA

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome R 13 0.8667 0.899 0.779 NA NA

GATA11.DAP:M0284:AthalianaCistrome GATA11.DAP/M0284/AthalianaCistrome D 13 0.8125 0.915 0.744 NA NA

Total matches= 46 (43 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 80 (8.24%)
Max nb of predicted sites per peak: 8
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.94

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 32 dyads_test_vs_ctrl_m2

k-mer sig=21.17; evalue=6.8e-22

wytCAGATCtrarw

WYTYAGATCTGARW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wytCAGATCtrarw

GATA4.DAP:M0287:AthalianaCistrome GATA4.DAP/M0287/AthalianaCistrome R 14 0.9333 0.873 0.815 NA NA

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome R 13 0.8667 0.900 0.780 NA NA

GATA14:MA1325.1:JASPAR GATA14/MA1325.1/JASPAR R 13 0.8125 0.939 0.763 NA NA

Total matches= 55 (52 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 105 (10.81%)
Max nb of predicted sites per peak: 7
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.34

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 33 dyads_test_vs_ctrl_m3

k-mer sig=21.17; evalue=6.8e-22

ssaatsRGmysKsgssaCGtsg

CSACGTSSCSMSRKCYSATTSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssaatsRGmysKsgssaCGtsg

ABF2:MA0941.1:JASPAR ABF2/MA0941.1/JASPAR D 12 0.5217 0.767 0.400 NA NA

Total matches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 94 (9.68%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr21g0314291)
Mean nb of predicted sites per peak: 1.29

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 34 dyads_test_vs_ctrl_m4

k-mer sig=21.17; evalue=6.8e-22

svCGtsGGcCsGsgssrsvss

SSBSYSSCSCSGGCCSACGBS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor svCGtsGGcCsGsgssrsvss

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 110 (11.33%)
Max nb of predicted sites per peak: 9
(gene-Lalb_Chr02g0142891)
Mean nb of predicted sites per peak: 2.07

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 35 dyads_test_vs_ctrl_m5

k-mer sig=21.17; evalue=6.8e-22

cgCCaGakCkGsgsskgsaCGkg

CMCGTSCMSSCSCMGMTCTGGCG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cgCCaGakCkGsgsskgsaCGkg

GATA11.DAP:M0284:AthalianaCistrome GATA11.DAP/M0284/AthalianaCistrome R 15 0.6522 0.779 0.508 NA NA

GATA12.ampDAP:M0289:AthalianaCistrome GATA12.ampDAP/M0289/AthalianaCistrome D 15 0.6522 0.728 0.475 NA NA

GATA14:MA1325.1:JASPAR GATA14/MA1325.1/JASPAR D 15 0.6522 0.714 0.466 NA NA

Total matches= 7 (4 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 88 (9.06%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr21g0314291)
Mean nb of predicted sites per peak: 1.27

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 36 dyads_test_vs_ctrl_m6

k-mer sig=21.17; evalue=6.8e-22

gscaCGRdyYgSsssggsmyyGsbvss

SSBVSCRRKSCCSSSSCRRHYCGTGSC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gscaCGRdyYgSsssggsmyyGsbvss

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 103 (10.61%)
Max nb of predicted sites per peak: 12
(gene-Lalb_Chr07g0194391)
Mean nb of predicted sites per peak: 2.05

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 37 dyads_test_vs_ctrl_m7

k-mer sig=21.17; evalue=6.8e-22

grckCGRdyYgGsssgGsmmcGtsrss

SSYSACGKKSCCSSSCCRRHYCGMGYC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor grckCGRdyYgGsssgGsmmcGtsrss

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 89 (9.17%)
Max nb of predicted sites per peak: 11
(gene-Lalb_Chr07g0194391)
Mean nb of predicted sites per peak: 1.76

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 38 dyads_test_vs_ctrl_m8

k-mer sig=21.17; evalue=6.8e-22

msaCaGakCtGsgsgkgsamkksrsss

SSSYSMMKTSCMCSCSCAGMTCTGTSK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor msaCaGakCtGsgsgkgsamkksrsss

GATA11.DAP:M0284:AthalianaCistrome GATA11.DAP/M0284/AthalianaCistrome R 15 0.5556 0.775 0.431 NA NA

Total matches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 83 (8.55%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr21g0314291)
Mean nb of predicted sites per peak: 1.11

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 39 dyads_test_vs_ctrl_m9

k-mer sig=21.17; evalue=6.8e-22

gscaCGRdyYGSsssggsacrsvsb

VSBSYGTSCCSSSSCRRHYCGTGSC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gscaCGRdyYGSsssggsacrsvsb

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 95 (9.78%)
Max nb of predicted sites per peak: 12
(gene-Lalb_Chr07g0194391)
Mean nb of predicted sites per peak: 1.84

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 40 dyads_test_vs_ctrl_m10

k-mer sig=1.37; evalue=0.043

rrGaAYAGAGarr

YYTCTCTRTTCYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrGaAYAGAGarr

REF6:MA1415.1:JASPAR REF6/MA1415.1/JASPAR D 11 0.8462 0.810 0.686 NA NA

REF6:MA1415.2:JASPAR REF6/MA1415.2/JASPAR D 9 0.6923 0.870 0.602 NA NA

Lysine-specific:6jnm_A:3D-footprint Lysine-specific/6jnm_A/3D-footprint R 7 0.5385 0.885 0.476 NA NA

Total matches= 7 (4 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 156 (16.07%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr21g0309751)
Mean nb of predicted sites per peak: 1.14

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]
Discovered motifs versus transcription factor databases
Motifs versus footprintDB-plants database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: MEgreenyellow_Up3_W1 (26/05/2025 08:40)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssaatsRGmysKsgssaCGtsg

ABF2:MA0941.1:JASPAR ABF2/MA0941.1/JASPAR D 12 0.5217 0.767 0.400 NA NA

Total matches= 1

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor svCGtsGGcCsGsgssrsvss

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gscaCGRdyYgSsssggsmyyGsbvss

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor grckCGRdyYgGsssgGsmmcGtsrss

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor msaCaGakCtGsgsgkgsamkksrsss

GATA11.DAP:M0284:AthalianaCistrome GATA11.DAP/M0284/AthalianaCistrome R 15 0.5556 0.775 0.431 NA NA

Total matches= 1

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gscaCGRdyYGSsssggsacrsvsb

Total matches= 0

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

RSAT - peak-motifs result

Analysis: MEgreenyellow_Up3_W1 (26/05/2025 08:40)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor ssaatsRGmysKsgssaCGtsg ABF2:MA0941.1:JASPAR ABF2/MA0941.1/JASPAR D 12 0.5217 0.767 0.400 NA NA Total matches= 1

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor svCGtsGGcCsGsgssrsvss Total matches= 0

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor gscaCGRdyYgSsssggsmyyGsbvss Total matches= 0

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor grckCGRdyYgGsssgGsmmcGtsrss Total matches= 0

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor msaCaGakCtGsgsgkgsamkksrsss GATA11.DAP:M0284:AthalianaCistrome GATA11.DAP/M0284/AthalianaCistrome R 15 0.5556 0.775 0.431 NA NA Total matches= 1

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor gscaCGRdyYGSsssggsacrsvsb Total matches= 0

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssaatsRGmysKsgssaCGtsg

ABF2:MA0941.1:JASPAR ABF2/MA0941.1/JASPAR D 12 0.5217 0.767 0.400 NA NA

Total matches= 1

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor svCGtsGGcCsGsgssrsvss

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gscaCGRdyYgSsssggsmyyGsbvss

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor grckCGRdyYgGsssgGsmmcGtsrss

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor msaCaGakCtGsgsgkgsamkksrsss

GATA11.DAP:M0284:AthalianaCistrome GATA11.DAP/M0284/AthalianaCistrome R 15 0.5556 0.775 0.431 NA NA

Total matches= 1

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gscaCGRdyYGSsssggsacrsvsb

Total matches= 0