peak-motifs MEgreenyellow_Up3

Motif discovery

Motif 1 oligos_6nt_test_vs_ctrl_m1

k-mer sig=10.40; evalue=4e-11

attCaGATCtGarw

WYTCAGATCTGAAT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor attCaGATCtGarw

GATA4.DAP:M0287:AthalianaCistrome GATA4.DAP/M0287/AthalianaCistrome D 14 0.9333 0.882 0.823 NA NA

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome R 13 0.8667 0.894 0.775 NA NA

GATA11.DAP:M0284:AthalianaCistrome GATA11.DAP/M0284/AthalianaCistrome R 13 0.8125 0.912 0.741 NA NA

Total matches= 42 (39 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 21 (20.79%)
Max nb of predicted sites per peak: 8
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 2.52

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_test_vs_ctrl_m2

k-mer sig=3.42; evalue=0.00038

rmGtGTGAdk

MHTCACACKY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rmGtGTGAdk

AT3G46070:MA1381.2:JASPAR AT3G46070/MA1381.2/JASPAR R 7 0.7000 0.778 0.544 NA NA

AT3G46070:MA1381.1:JASPAR AT3G46070/MA1381.1/JASPAR R 10 0.6667 0.766 0.511 NA NA

BMY2:MA2375.1:JASPAR BMY2/MA2375.1/JASPAR D 8 0.6154 0.816 0.502 NA NA

Total matches= 37 (34 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 44 (43.56%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr23g0277901)
Mean nb of predicted sites per peak: 1.32

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_test_vs_ctrl_m3

k-mer sig=0.39; evalue=0.41

ccACGtCasy

RSTGACGTGG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ccACGtCasy

BZIP17:M0263_1.02:CISBP BZIP17/M0263_1.02/CISBP R 10 1.0000 0.917 0.917 NA NA

TGA6:MA1069.1:JASPAR TGA6/MA1069.1/JASPAR R 10 1.0000 0.902 0.902 NA NA

TGA6:M0265_1.02:CISBP TGA6/M0265_1.02/CISBP R 10 1.0000 0.901 0.901 NA NA

Total matches= 252 (249 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 18 (17.82%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr21g0309481)
Mean nb of predicted sites per peak: 1.11

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_test_vs_ctrl_m4

k-mer sig=0.37; evalue=0.43

tsaCaCGtgr

YCACGTGTSA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor tsaCaCGtgr

NFYB2:UN0689.1:JASPAR NFYB2/UN0689.1/JASPAR D 10 1.0000 0.975 0.975 NA NA

GLYMA-13G317000:UN0421.1:JASPAR GLYMA-13G317000/UN0421.1/JASPAR D 10 1.0000 0.974 0.974 NA NA

ABI5:M0261_1.02:CISBP ABI5/M0261_1.02/CISBP D 10 1.0000 0.914 0.914 NA NA

Total matches= 343 (340 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 27 (26.73%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr21g0309481)
Mean nb of predicted sites per peak: 1.89

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_test_vs_ctrl_m5

k-mer sig=0.24; evalue=0.58

hsaCGTGGma

TKCCACGTSD

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor hsaCGTGGma

bZIP11:bZIP9_1:EEAD0112:EEADannot bZIP11:bZIP9_1/EEAD0112/EEADannot D 10 1.0000 0.933 0.933 NA NA

GBF1:M0268_1.02:CISBP GBF1/M0268_1.02/CISBP D 10 1.0000 0.924 0.924 NA NA

bZIP44_1:EEAD0098:EEADannot bZIP44_1/EEAD0098/EEADannot R 10 1.0000 0.918 0.918 NA NA

Total matches= 325 (322 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 25 (24.75%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr21g0309481)
Mean nb of predicted sites per peak: 1.44

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 oligos_6nt_test_vs_ctrl_m6

k-mer sig=0.02; evalue=0.95

ywCaCTTCtc

GAGAAGTGWR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ywCaCTTCtc

LEC1-A:UN0423.1:JASPAR LEC1-A/UN0423.1/JASPAR R 10 1.0000 0.742 0.742 NA NA

CDF3:MA0974.2:JASPAR CDF3/MA0974.2/JASPAR R 10 0.8333 0.704 0.587 NA NA

AT2G31460:UN0390.2:JASPAR AT2G31460/UN0390.2/JASPAR R 8 0.8000 0.710 0.568 NA NA

Total matches= 22 (19 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 35 (34.65%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr23g0277901)
Mean nb of predicted sites per peak: 1.23

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 oligos_7nt_test_vs_ctrl_m1

k-mer sig=11.40; evalue=4e-12

gattCaGATCtGaakc

GMTTCAGATCTGAATC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gattCaGATCtGaakc

GATA4.DAP:M0287:AthalianaCistrome GATA4.DAP/M0287/AthalianaCistrome R 15 0.9375 0.865 0.811 NA NA

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome D 14 0.8750 0.878 0.768 NA NA

GATA11.DAP:M0284:AthalianaCistrome GATA11.DAP/M0284/AthalianaCistrome D 14 0.8235 0.896 0.738 NA NA

Total matches= 33 (30 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 22 (21.78%)
Max nb of predicted sites per peak: 8
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 2.27

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_7nt_test_vs_ctrl_m2

k-mer sig=11.40; evalue=4e-12

sattCAGATCtrrv

BYYAGATCTGAATS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sattCAGATCtrrv

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome D 14 1.0000 0.893 0.893 NA NA

GATA12.DAP:M0285:AthalianaCistrome GATA12.DAP/M0285/AthalianaCistrome D 13 0.9286 0.925 0.859 NA NA

GATA4.DAP:M0287:AthalianaCistrome GATA4.DAP/M0287/AthalianaCistrome R 14 0.9333 0.886 0.827 NA NA

Total matches= 48 (45 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 26 (25.74%)
Max nb of predicted sites per peak: 7
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.58

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 oligos_7nt_test_vs_ctrl_m3

k-mer sig=2.87; evalue=0.0013

kgaGtGtGAakd

HMTTCACACTCM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kgaGtGtGAakd

ZAT6:ZAT6:ArabidopsisPBM ZAT6/ZAT6/ArabidopsisPBM R 10 0.8333 0.749 0.624 NA NA

AT3G46070:MA1381.1:JASPAR AT3G46070/MA1381.1/JASPAR R 12 0.8000 0.742 0.594 NA NA

AZF2:M0372_1.02:CISBP AZF2/M0372_1.02/CISBP D 7 0.5833 0.778 0.454 NA NA

Total matches= 14 (11 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 35 (34.65%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr23g0277901)
Mean nb of predicted sites per peak: 1.40

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_7nt_test_vs_ctrl_m4

k-mer sig=11.40; evalue=4e-12

kattCAGATCysr

YSRGATCTGAATM

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor kattCAGATCysr

GATA12.DAP:M0285:AthalianaCistrome GATA12.DAP/M0285/AthalianaCistrome D 13 1.0000 0.905 0.905 NA NA

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome D 13 0.9286 0.852 0.791 NA NA

GATA4.DAP:M0287:AthalianaCistrome GATA4.DAP/M0287/AthalianaCistrome R 13 0.8667 0.877 0.760 NA NA

Total matches= 57 (54 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 26 (25.74%)
Max nb of predicted sites per peak: 7
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.65

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_7nt_test_vs_ctrl_m5

k-mer sig=0.49; evalue=0.32

mtCtGaatCas

STGATTCAGAK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mtCtGaatCas

LOC_Os02g22020:M1363_1.02:CISBP LOC_Os02g22020/M1363_1.02/CISBP R 10 0.9091 0.745 0.677 NA NA

AT1G25550:M1320_1.02:CISBP AT1G25550/M1320_1.02/CISBP R 10 0.9091 0.742 0.674 NA NA

AT1G68670:M1321_1.02:CISBP AT1G68670/M1321_1.02/CISBP D 10 0.9091 0.721 0.656 NA NA

Total matches= 33 (30 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 16 (15.84%)
Max nb of predicted sites per peak: 7
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.44

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_8nt_test_vs_ctrl_m1

k-mer sig=9.31; evalue=4.9e-10

sstGaktSaGATCtGratCass

SSTGATYCAGATCTSAMTCASS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sstGaktSaGATCtGratCass

GATA12.ampDAP:M0289:AthalianaCistrome GATA12.ampDAP/M0289/AthalianaCistrome D 15 0.6818 0.895 0.610 NA NA

GATA11.DAP:M0284:AthalianaCistrome GATA11.DAP/M0284/AthalianaCistrome D 15 0.6818 0.879 0.600 NA NA

GATA4.DAP:M0287:AthalianaCistrome GATA4.DAP/M0287/AthalianaCistrome D 15 0.6818 0.866 0.590 NA NA

Total matches= 10 (7 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 16 (15.84%)
Max nb of predicted sites per peak: 8
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 2.31

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 oligos_8nt_test_vs_ctrl_m2

k-mer sig=9.31; evalue=4.9e-10

sstGaTtCAGATCtvrv

BYBAGATCTGAATCASS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sstGaTtCAGATCtvrv

GATA12.ampDAP:M0289:AthalianaCistrome GATA12.ampDAP/M0289/AthalianaCistrome R 15 0.8824 0.894 0.789 NA NA

GATA11.DAP:M0284:AthalianaCistrome GATA11.DAP/M0284/AthalianaCistrome D 15 0.8824 0.848 0.748 NA NA

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome D 14 0.8235 0.877 0.723 NA NA

Total matches= 40 (37 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 29 (28.71%)
Max nb of predicted sites per peak: 7
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.41

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 oligos_8nt_test_vs_ctrl_m3

k-mer sig=7.74; evalue=1.8e-08

tsRGATCTGAatcass

SSTGATTCAGATCYSA

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor tsRGATCTGAatcass

GATA12.ampDAP:M0289:AthalianaCistrome GATA12.ampDAP/M0289/AthalianaCistrome D 15 0.9375 0.889 0.833 NA NA

GATA12.DAP:M0285:AthalianaCistrome GATA12.DAP/M0285/AthalianaCistrome R 13 0.8125 0.902 0.733 NA NA

GATA11.DAP:M0284:AthalianaCistrome GATA11.DAP/M0284/AthalianaCistrome R 14 0.8235 0.817 0.673 NA NA

Total matches= 42 (39 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 27 (26.73%)
Max nb of predicted sites per peak: 7
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 1.44

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 oligos_8nt_test_vs_ctrl_m4

k-mer sig=0.63; evalue=0.23

ytCACTTCtCmc

GKGAGAAGTGAR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ytCACTTCtCmc

ATAF1:UP00573A_2:UniPROBE ATAF1/UP00573A_2/UniPROBE R 12 1.0000 0.715 0.715 NA NA

LEC1-A:UN0423.1:JASPAR LEC1-A/UN0423.1/JASPAR R 10 0.8333 0.707 0.589 NA NA

AT2G31460:UN0390.2:JASPAR AT2G31460/UN0390.2/JASPAR R 8 0.6667 0.741 0.494 NA NA

Total matches= 17 (14 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 27 (26.73%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr23g0277901)
Mean nb of predicted sites per peak: 1.30

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 16 oligos_8nt_test_vs_ctrl_m5

k-mer sig=0.35; evalue=0.45

wkATtaGGAArk

MYTTCCTAATMW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wkATtaGGAArk

AT3G49930:UN0355.1:JASPAR AT3G49930/UN0355.1/JASPAR R 11 0.9167 0.734 0.673 NA NA

PHE1SVP:EEAD0020:EEADannot PHE1SVP/EEAD0020/EEADannot R 10 0.8333 0.748 0.623 NA NA

MYB27:MA1292.1:JASPAR MYB27/MA1292.1/JASPAR D 12 0.8000 0.743 0.594 NA NA

Total matches= 24 (21 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 24 (23.76%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr04g0264811)
Mean nb of predicted sites per peak: 1.12

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 17 oligos_8nt_test_vs_ctrl_m6

k-mer sig=0.06; evalue=0.87

ddtAGATCTahw

WDTAGATCTAHH

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ddtAGATCTahw

GATA9:M0768_1.02:CISBP GATA9/M0768_1.02/CISBP D 11 0.9167 0.908 0.832 NA NA

GATA9:MA1018.1:JASPAR GATA9/MA1018.1/JASPAR D 11 0.9167 0.908 0.832 NA NA

AGP1:AGP1:Athamap AGP1/AGP1/Athamap R 10 0.8333 0.923 0.769 NA NA

Total matches= 42 (39 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 13 (12.87%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr24g0403121)
Mean nb of predicted sites per peak: 1.92

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 18 dyads_test_vs_ctrl_m1

k-mer sig=9.66; evalue=2.2e-10

gwttCaGATCtGradc

GHTYCAGATCTGAAWC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor gwttCaGATCtGradc

GATA4.DAP:M0287:AthalianaCistrome GATA4.DAP/M0287/AthalianaCistrome D 15 0.9375 0.877 0.822 NA NA

GATA1.ampDAP:M0286:AthalianaCistrome GATA1.ampDAP/M0286/AthalianaCistrome R 14 0.8750 0.888 0.777 NA NA

GATA11.DAP:M0284:AthalianaCistrome GATA11.DAP/M0284/AthalianaCistrome R 14 0.8235 0.908 0.748 NA NA

Total matches= 36 (33 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 22 (21.78%)
Max nb of predicted sites per peak: 8
(gene-Lalb_Chr25g0278631)
Mean nb of predicted sites per peak: 2.41

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 19 dyads_test_vs_ctrl_m2

k-mer sig=2.50; evalue=0.0032

rmGtGTGAdk

MHTCACACKY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rmGtGTGAdk

AT3G46070:MA1381.2:JASPAR AT3G46070/MA1381.2/JASPAR R 7 0.7000 0.778 0.544 NA NA

AT3G46070:MA1381.1:JASPAR AT3G46070/MA1381.1/JASPAR R 10 0.6667 0.766 0.511 NA NA

BMY2:MA2375.1:JASPAR BMY2/MA2375.1/JASPAR D 8 0.6154 0.816 0.502 NA NA

Total matches= 37 (34 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 44 (43.56%)
Max nb of predicted sites per peak: 5
(gene-Lalb_Chr23g0277901)
Mean nb of predicted sites per peak: 1.32

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 20 dyads_test_vs_ctrl_m3

k-mer sig=9.66; evalue=2.2e-10

srGCGmGvwsyrGmsvcGsktamss

SSKTAMSCGBSKCYRSWBCKCGCYS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor srGCGmGvwsyrGmsvcGsktamss

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 21 (20.79%)
Max nb of predicted sites per peak: 6
(gene-Lalb_Chr11g0061751)
Mean nb of predicted sites per peak: 1.67

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 21 dyads_test_vs_ctrl_m4

k-mer sig=9.66; evalue=2.2e-10

ssvAtSGGsSsGGbsmsrrkwggSscb

VGSSCCWMYYSKSVCCSSSCCSATBSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssvAtSGGsSsGGbsmsrrkwggSscb

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 19 (18.81%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr11g0061751)
Mean nb of predicted sites per peak: 1.42

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]
Discovered motifs versus transcription factor databases
Motifs versus footprintDB-plants database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: MEgreenyellow_Up3_W3 (26/05/2025 08:44)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor srGCGmGvwsyrGmsvcGsktamss

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssvAtSGGsSsGGbsmsrrkwggSscb

Total matches= 0

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

RSAT - peak-motifs result

Analysis: MEgreenyellow_Up3_W3 (26/05/2025 08:44)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor srGCGmGvwsyrGmsvcGsktamss Total matches= 0

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor ssvAtSGGsSsGGbsmsrrkwggSscb Total matches= 0

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor srGCGmGvwsyrGmsvcGsktamss

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssvAtSGGsSsGGbsmsrrkwggSscb

Total matches= 0