peak-motifs MEsteelblue_Up3

Motif discovery

Motif 1 oligos_6nt_test_vs_ctrl_m1

k-mer sig=4.94; evalue=1.1e-05

rvaACGTGCaw

WTGCACGTTBY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rvaACGTGCaw

LOC_Os02g49560:M0327_1.02:CISBP LOC_Os02g49560/M0327_1.02/CISBP R 11 1.0000 0.737 0.737 NA NA

BEE2:M0161_1.02:CISBP BEE2/M0161_1.02/CISBP R 10 0.9091 0.805 0.732 NA NA

BEE2:MA0956.1:JASPAR BEE2/MA0956.1/JASPAR D 10 0.9091 0.804 0.731 NA NA

Total matches= 163 (160 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 44 (20.95%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr20g0113561)
Mean nb of predicted sites per peak: 1.16

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_test_vs_ctrl_m2

k-mer sig=1.64; evalue=0.023

wtwTATTAAsy

RSTTAATAWAW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wtwTATTAAsy

WOX11:UN0413.1:JASPAR WOX11/UN0413.1/JASPAR R 11 1.0000 0.721 0.721 NA NA

WOX11.DAP:M0422:AthalianaCistrome WOX11.DAP/M0422/AthalianaCistrome R 11 1.0000 0.721 0.721 NA NA

ATHB23.ampDAP:M0855:AthalianaCistrome ATHB23.ampDAP/M0855/AthalianaCistrome D 11 1.0000 0.704 0.704 NA NA

Total matches= 66 (63 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 6 (2.86%)
Max nb of predicted sites per peak: 1
(gene-Lalb_Chr20g0113061)
Mean nb of predicted sites per peak: 1.00

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_test_vs_ctrl_m3

k-mer sig=4.62; evalue=2.4e-05

rkGCaCGtSmy

RKSACGTGCMY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rkGCaCGtSmy

0300010311:M0363_1.02:CISBP 0300010311/M0363_1.02/CISBP R 11 1.0000 0.820 0.820 NA NA

BHLH49:MA1740.1:JASPAR BHLH49/MA1740.1/JASPAR R 10 0.9091 0.870 0.791 NA NA

HBI1:MA1025.1:JASPAR HBI1/MA1025.1/JASPAR D 11 0.9167 0.862 0.790 NA NA

Total matches= 255 (252 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 49 (23.33%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr20g0113561)
Mean nb of predicted sites per peak: 1.16

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_test_vs_ctrl_m4

k-mer sig=0.31; evalue=0.49

rrAGTTGArt

AYTCAACTYY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rrAGTTGArt

WRKY30:MA1083.1:JASPAR WRKY30/MA1083.1/JASPAR R 10 1.0000 0.733 0.733 NA NA

WRKY30:M1697_1.02:CISBP WRKY30/M1697_1.02/CISBP R 10 1.0000 0.732 0.732 NA NA

WRKY53:MA1805.1:JASPAR WRKY53/MA1805.1/JASPAR R 9 0.9000 0.739 0.665 NA NA

Total matches= 213 (210 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 69 (32.86%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr07g0177311)
Mean nb of predicted sites per peak: 1.23

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_test_vs_ctrl_m5

k-mer sig=0.08; evalue=0.83

mmaAGTCAahv

BDTTGACTTKK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor mmaAGTCAahv

WRKY50.ampDAP:M0824:AthalianaCistrome WRKY50.ampDAP/M0824/AthalianaCistrome D 11 1.0000 0.959 0.959 NA NA

WRKY71:MA1316.1:JASPAR WRKY71/MA1316.1/JASPAR D 11 1.0000 0.908 0.908 NA NA

WRKY45.ampDAP:M0821:AthalianaCistrome WRKY45.ampDAP/M0821/AthalianaCistrome D 11 1.0000 0.903 0.903 NA NA

Total matches= 208 (205 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 34 (16.19%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr12g0197841)
Mean nb of predicted sites per peak: 1.06

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 oligos_6nt_test_vs_ctrl_m6

k-mer sig=4.94; evalue=1.1e-05

rvaaCGtGsrr

YYSCACGTTBY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rvaaCGtGsrr

LOC_Os02g49560:M0327_1.02:CISBP LOC_Os02g49560/M0327_1.02/CISBP R 11 1.0000 0.849 0.849 NA NA

0300010311:M0363_1.02:CISBP 0300010311/M0363_1.02/CISBP D 11 1.0000 0.842 0.842 NA NA

bZIP11:bZIP10_1:EEAD0108:EEADannot bZIP11:bZIP10_1/EEAD0108/EEADannot R 11 1.0000 0.812 0.812 NA NA

Total matches= 291 (288 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 62 (29.52%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr13g0301171)
Mean nb of predicted sites per peak: 1.29

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 oligos_7nt_test_vs_ctrl_m1

k-mer sig=2.47; evalue=0.0034

grkGaCGTGCrr

YYGCACGTCMYC

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor grkGaCGTGCrr

HYH:MA1425.1:JASPAR HYH/MA1425.1/JASPAR D 12 1.0000 0.817 0.817 NA NA

ABF4:MA1659.1:JASPAR ABF4/MA1659.1/JASPAR R 12 1.0000 0.796 0.796 NA NA

O11:MA1816.1:JASPAR O11/MA1816.1/JASPAR R 12 1.0000 0.770 0.770 NA NA

Total matches= 202 (199 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 44 (20.95%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr05g0211281)
Mean nb of predicted sites per peak: 1.18

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 oligos_7nt_test_vs_ctrl_m2

k-mer sig=1.00; evalue=0.1

yrtGTtTAAbr

YVTTAAACAYR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor yrtGTtTAAbr

AT2G20110:M0588_1.02:CISBP AT2G20110/M0588_1.02/CISBP D 8 0.7273 0.776 0.565 NA NA

GT-1:MA1020.1:JASPAR GT-1/MA1020.1/JASPAR R 8 0.7273 0.749 0.545 NA NA

GT-1:M1276_1.02:CISBP GT-1/M1276_1.02/CISBP R 8 0.7273 0.748 0.544 NA NA

Total matches= 23 (20 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 39 (18.57%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr23g0269331)
Mean nb of predicted sites per peak: 1.10

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 oligos_7nt_test_vs_ctrl_m3

k-mer sig=0.98; evalue=0.1

rvAACGTGGkr

YMCCACGTTBY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rvAACGTGGkr

LOC_Os02g49560:M0327_1.02:CISBP LOC_Os02g49560/M0327_1.02/CISBP R 11 1.0000 0.792 0.792 NA NA

0300010311:M0363_1.02:CISBP 0300010311/M0363_1.02/CISBP D 11 1.0000 0.774 0.774 NA NA

bZIP11:bZIP10_1:EEAD0108:EEADannot bZIP11:bZIP10_1/EEAD0108/EEADannot R 11 1.0000 0.752 0.752 NA NA

Total matches= 161 (158 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 37 (17.62%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr19g0140321)
Mean nb of predicted sites per peak: 1.11

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 oligos_7nt_test_vs_ctrl_m4

k-mer sig=0.38; evalue=0.42

rvaACGTGCaw

WTGCACGTTBY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rvaACGTGCaw

LOC_Os02g49560:M0327_1.02:CISBP LOC_Os02g49560/M0327_1.02/CISBP R 11 1.0000 0.737 0.737 NA NA

BEE2:M0161_1.02:CISBP BEE2/M0161_1.02/CISBP R 10 0.9091 0.805 0.732 NA NA

BEE2:MA0956.1:JASPAR BEE2/MA0956.1/JASPAR D 10 0.9091 0.804 0.731 NA NA

Total matches= 163 (160 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 44 (20.95%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr20g0113561)
Mean nb of predicted sites per peak: 1.16

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_8nt_test_vs_ctrl_m1

k-mer sig=1.53; evalue=0.03

wraGaCGtGCdv

BHGCACGTCTYW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wraGaCGtGCdv

HYH:MA1425.1:JASPAR HYH/MA1425.1/JASPAR D 12 1.0000 0.748 0.748 NA NA

ABF4:MA1659.1:JASPAR ABF4/MA1659.1/JASPAR R 12 1.0000 0.733 0.733 NA NA

O11:MA1816.1:JASPAR O11/MA1816.1/JASPAR R 12 1.0000 0.709 0.709 NA NA

Total matches= 127 (124 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 46 (21.90%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr05g0226481)
Mean nb of predicted sites per peak: 1.07

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_8nt_test_vs_ctrl_m2

k-mer sig=0.73; evalue=0.19

rvaACGTGGtgs

SCACCACGTTBY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rvaACGTGGtgs

LOC_Os02g49560:M0327_1.02:CISBP LOC_Os02g49560/M0327_1.02/CISBP R 11 0.9167 0.745 0.683 NA NA

0300010311:M0363_1.02:CISBP 0300010311/M0363_1.02/CISBP D 11 0.9167 0.729 0.668 NA NA

ABF4:MA1659.1:JASPAR ABF4/MA1659.1/JASPAR R 11 0.8462 0.769 0.650 NA NA

Total matches= 88 (85 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 42 (20.00%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr01g0002131)
Mean nb of predicted sites per peak: 1.36

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 dyads_test_vs_ctrl_m1

k-mer sig=4.18; evalue=6.6e-05

rvaACGTGCaw

WTGCACGTTBY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rvaACGTGCaw

LOC_Os02g49560:M0327_1.02:CISBP LOC_Os02g49560/M0327_1.02/CISBP R 11 1.0000 0.737 0.737 NA NA

BEE2:M0161_1.02:CISBP BEE2/M0161_1.02/CISBP R 10 0.9091 0.805 0.732 NA NA

BEE2:MA0956.1:JASPAR BEE2/MA0956.1/JASPAR D 10 0.9091 0.804 0.731 NA NA

Total matches= 163 (160 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 44 (20.95%)
Max nb of predicted sites per peak: 2
(gene-Lalb_Chr20g0113561)
Mean nb of predicted sites per peak: 1.16

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 dyads_test_vs_ctrl_m2

k-mer sig=4.18; evalue=6.6e-05

sgtaASshSbtaabw

WVTTAVSDSSTTACS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sgtaASshSbtaabw

Os02g0706600:M1116_1.02:CISBP Os02g0706600/M1116_1.02/CISBP D 10 0.6667 0.712 0.475 NA NA

AtMYB74_II:AtMYB74_II:AthaMYB AtMYB74_II/AtMYB74_II/AthaMYB R 8 0.5333 0.832 0.444 NA NA

AtMYB52_II:AtMYB52_II:AthaMYB AtMYB52_II/AtMYB52_II/AthaMYB R 8 0.5333 0.807 0.430 NA NA

Total matches= 12 (9 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 13 (6.19%)
Max nb of predicted sites per peak: 1
(gene-Lalb_Chr25g0289171)
Mean nb of predicted sites per peak: 1.00

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 dyads_test_vs_ctrl_m3

k-mer sig=4.18; evalue=6.6e-05

sytaAsvysbtaaytamwmmtaarr

YYTTAKKWKTARTTAVSRBSTTARS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sytaAsvysbtaaytamwmmtaarr

ATHB24.ampDAP:M0858:AthalianaCistrome ATHB24.ampDAP/M0858/AthalianaCistrome R 15 0.6000 0.756 0.454 NA NA

ATHB24:MA1330.1:JASPAR ATHB24/MA1330.1/JASPAR R 15 0.6000 0.746 0.448 NA NA

ATHB25:MA1329.1:JASPAR ATHB25/MA1329.1/JASPAR D 15 0.6000 0.722 0.433 NA NA

Total matches= 7 (4 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 19 (9.05%)
Max nb of predicted sites per peak: 1
(gene-Lalb_Chr23g0265461)
Mean nb of predicted sites per peak: 1.00

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 16 dyads_test_vs_ctrl_m4

k-mer sig=4.18; evalue=6.6e-05

ymrCassksStcsbwacdwmwkwGtCkc

GMGACWMWKWHGTWVSGASSMSSTGYKR

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ymrCassksStcsbwacdwmwkwGtCkc

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 17 (8.10%)
Max nb of predicted sites per peak: 4
(gene-Lalb_Chr14g0367881)
Mean nb of predicted sites per peak: 1.35

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 17 dyads_test_vs_ctrl_m5

k-mer sig=4.18; evalue=6.6e-05

myratSMSsGssydakawmamrdsk

MSHYKTKWTMTHRSSCSSKSATYRK

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor myratSMSsGssydakawmamrdsk

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 21 (10.00%)
Max nb of predicted sites per peak: 3
(gene-Lalb_Chr13g0295961)
Mean nb of predicted sites per peak: 1.24

[ sites: text ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]
Discovered motifs versus transcription factor databases
Motifs versus footprintDB-plants database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: MEsteelblue_Up3_W1 (26/05/2025 08:55)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ymrCassksStcsbwacdwmwkwGtCkc

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor myratSMSsGssydakawmamrdsk

Total matches= 0

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

RSAT - peak-motifs result

Analysis: MEsteelblue_Up3_W1 (26/05/2025 08:55)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor ymrCassksStcsbwacdwmwkwGtCkc Total matches= 0

footprintDB-plants name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor myratSMSsGssydakawmamrdsk Total matches= 0

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ymrCassksStcsbwacdwmwkwGtCkc

Total matches= 0

footprintDB-plants

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor myratSMSsGssydakawmamrdsk

Total matches= 0