peak-motifs sertoli

Motif discovery

Motif 1 oligos_6nt_mkv3_m1

k-mer sig=39.68; evalue=2.1e-40

sccCCGCCCCGccc

GGGCGGGGCGGGGS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sccCCGCCCCGccc

ZBED4 MA2328.1 D 10 0.7143 0.971 0.694 NA NA

PATZ1 MA1961.2 R 11 0.7857 0.849 0.667 NA NA

SP2 MA0516.3 R 9 0.6429 0.978 0.629 NA NA

Total matches= 26 (23 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 290 (52.16%)
Max nb of predicted sites per peak: 8
(chr14:14345281-14348298)
Mean nb of predicted sites per peak: 1.89

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 2 oligos_6nt_mkv3_m2

k-mer sig=19.43; evalue=3.7e-20

rhaAgCCAATcAawr

YWTTGATTGGCTTDY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rhaAgCCAATcAawr

DUX4 MA0468.1 D 11 0.7333 0.728 0.534 NA NA

NFYA MA0060.4 D 8 0.5333 0.976 0.521 NA NA

NFYB MA0502.3 R 9 0.6000 0.798 0.479 NA NA

Total matches= 11 (8 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 184 (33.09%)
Max nb of predicted sites per peak: 5
(chr19:11965028-11966030)
Mean nb of predicted sites per peak: 1.25

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 3 oligos_6nt_mkv3_m3

k-mer sig=15.55; evalue=2.8e-16

rssCGGAGCys

SRGCTCCGSSY

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor rssCGGAGCys

ZNF331 MA1726.2 D 10 0.9091 0.718 0.653 NA NA

ZBED4 MA2328.1 R 9 0.7500 0.804 0.603 NA NA

ZNF610 MA1713.2 R 7 0.5000 0.855 0.427 NA NA

Total matches= 4 (1 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 288 (51.80%)
Max nb of predicted sites per peak: 5
(chr4:114907490-114909575)
Mean nb of predicted sites per peak: 1.49

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 4 oligos_6nt_mkv3_m4

k-mer sig=19.43; evalue=3.7e-20

whAAcCAATcAaar

YTTTGATTGGTTDW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor whAAcCAATcAaar

NFYA MA0060.4 D 8 0.5714 0.974 0.556 NA NA

DUX4 MA0468.1 D 11 0.7857 0.704 0.553 NA NA

PBX1 MA0070.2 D 9 0.6429 0.829 0.533 NA NA

Total matches= 12 (9 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 210 (37.77%)
Max nb of predicted sites per peak: 7
(chr16:62846541-62847445)
Mean nb of predicted sites per peak: 1.39

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 5 oligos_6nt_mkv3_m5

k-mer sig=8.29; evalue=5.1e-09

aaAAAcAAAaw

WTTTTGTTTTT

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor aaAAAcAAAaw

FOXD2 MA0847.4 D 11 1.0000 0.743 0.743 NA NA

Foxj3 MA0851.2 D 9 0.8182 0.825 0.675 NA NA

Sox6 MA0515.1 R 10 0.9091 0.738 0.671 NA NA

Total matches= 38 (35 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 217 (39.03%)
Max nb of predicted sites per peak: 16
(chr6:41604424-41605861)
Mean nb of predicted sites per peak: 2.42

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 6 positions_6nt_m1

k-mer sig=44.93; evalue=1.2e-45

cscgggccgccgcgcggcggccgs

SCGGCCGCCGCGCGGCGGCCCGSG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cscgggccgccgcgcggcggccgs

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 193 (34.71%)
Max nb of predicted sites per peak: 12
(chr3:133309838-133310958)
Mean nb of predicted sites per peak: 2.61

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 7 positions_6nt_m2

k-mer sig=44.93; evalue=1.2e-45

scgcccgCcgccccgcgCggcgcs

SGCGCCGCGCGGGGCGGCGGGCGS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor scgcccgCcgccccgcgCggcgcs

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 222 (39.93%)
Max nb of predicted sites per peak: 11
(chr10:11280507-11281906)
Mean nb of predicted sites per peak: 2.82

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 8 positions_6nt_m3

k-mer sig=44.93; evalue=1.2e-45

ssccggcggCgcggcccgccgCsk

MSGCGGCGGGCCGCGCCGCCGGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssccggcggCgcggcccgccgCsk

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 223 (40.11%)
Max nb of predicted sites per peak: 20
(chr16:67619789-67621476)
Mean nb of predicted sites per peak: 2.58

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 9 positions_6nt_m4

k-mer sig=44.93; evalue=1.2e-45

sgrggcgggGcgGcGgagcggcgs

SCGCCGCTCCGCCGCCCCGCCYCS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sgrggcgggGcgGcGgagcggcgs

PATZ1 MA1961.2 D 11 0.4583 0.892 0.409 NA NA

Total matches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 271 (48.74%)
Max nb of predicted sites per peak: 11
(chr6:124662498-124663618)
Mean nb of predicted sites per peak: 2.79

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 10 positions_6nt_m5

k-mer sig=44.93; evalue=1.2e-45

ssgcggcgggccgccgckgcgcss

SSGCGCMGCGGCGGCCCGCCGCSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssgcggcgggccgccgckgcgcss

ZNF93 MA1721.2 R 14 0.5833 0.704 0.411 NA NA

Total matches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 195 (35.07%)
Max nb of predicted sites per peak: 8
(chr2:19657266-19658956)
Mean nb of predicted sites per peak: 2.19

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 11 oligos_7nt_mkv4_m1

k-mer sig=24.25; evalue=5.6e-25

cmggCCCCGCCcccyc

GRGGGGGCGGGGCCKG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cmggCCCCGCCcccyc

PATZ1 MA1961.2 R 11 0.6875 0.926 0.636 NA NA

KLF16 MA0741.1 D 11 0.6875 0.874 0.601 NA NA

SP3 MA0746.3 D 11 0.6875 0.865 0.595 NA NA

Total matches= 31 (28 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 322 (57.91%)
Max nb of predicted sites per peak: 14
(chr14:14345281-14348298)
Mean nb of predicted sites per peak: 1.99

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 12 oligos_7nt_mkv4_m2

k-mer sig=13.98; evalue=1e-14

wayAgCCAATcAgmr

YKCTGATTGGCTRTW

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor wayAgCCAATcAgmr

NFYA MA0060.4 D 8 0.5333 0.993 0.530 NA NA

NFYB MA0502.3 R 9 0.6000 0.822 0.493 NA NA

NFYC MA1644.2 D 7 0.4667 0.998 0.466 NA NA

Total matches= 3

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 198 (35.61%)
Max nb of predicted sites per peak: 4
(chr19:11965028-11966030)
Mean nb of predicted sites per peak: 1.30

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 13 oligos_7nt_mkv4_m3

k-mer sig=11.79; evalue=1.6e-12

ssgCGGAGCCggss

SSCCGGCTCCGCSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssgCGGAGCCggss

ZBED4 MA2328.1 R 10 0.7143 0.804 0.574 NA NA

ZNF331 MA1726.2 D 10 0.7143 0.744 0.532 NA NA

ZNF610 MA1713.2 R 10 0.7143 0.727 0.520 NA NA

Total matches= 6 (3 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 193 (34.71%)
Max nb of predicted sites per peak: 6
(chr13:12105775-12107227)
Mean nb of predicted sites per peak: 1.35

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 14 oligos_7nt_mkv4_m4

k-mer sig=8.41; evalue=3.9e-09

ccCCCACCCccasc

GSTGGGGGTGGGGG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ccCCCACCCccasc

PATZ1 MA1961.2 R 11 0.7857 0.878 0.690 NA NA

KLF16 MA0741.1 D 11 0.7857 0.807 0.634 NA NA

KLF5 MA0599.1 D 10 0.7143 0.880 0.629 NA NA

Total matches= 32 (29 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 204 (36.69%)
Max nb of predicted sites per peak: 5
(chr9:8133818-8134723)
Mean nb of predicted sites per peak: 1.47

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 15 oligos_7nt_mkv4_m5

k-mer sig=6.95; evalue=1.1e-07

sbCCGGGCCgggss

SSCCCGGCCCGGVS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sbCCGGGCCgggss

ZNF213 MA2121.1 D 12 0.8571 0.701 0.601 NA NA

SP2 MA0516.3 D 9 0.6429 0.763 0.490 NA NA

SP1 MA0079.5 D 9 0.6429 0.759 0.488 NA NA

Total matches= 10 (7 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 140 (25.18%)
Max nb of predicted sites per peak: 4
(chr4:143161647-143162640)
Mean nb of predicted sites per peak: 1.34

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 16 positions_7nt_m1

k-mer sig=24.65; evalue=2.2e-25

sgscgscgccGCcgCgGCggcggc

GCCGCCGCCGCGGCGGCGSCGSCS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sgscgscgccGCcgCgGCggcggc

ZNF93 MA1721.2 D 14 0.5833 0.747 0.436 NA NA

Total matches= 1

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 198 (35.61%)
Max nb of predicted sites per peak: 45
(chr16:67619789-67621476)
Mean nb of predicted sites per peak: 5.50

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 17 positions_7nt_m2

k-mer sig=13.45; evalue=3.5e-14

cccgCcCCGCCccss

SSGGGGCGGGGCGGG

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cccgCcCCGCCccss

PATZ1 MA1961.2 R 11 0.7333 0.916 0.672 NA NA

ZBED4 MA2328.1 D 10 0.6667 0.954 0.636 NA NA

SP3 MA0746.3 D 11 0.7333 0.838 0.615 NA NA

Total matches= 26 (23 more)

[ match table: html text ]
[ alignments (logos): html text ]

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 305 (54.86%)
Max nb of predicted sites per peak: 11
(chr14:14345281-14348298)
Mean nb of predicted sites per peak: 1.96

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 18 positions_7nt_m3

k-mer sig=24.65; evalue=2.2e-25

ssggcgccgccgcgcggcggcgss

SSCGCCGCCGCGCGGCGGCGCCSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssggcgccgccgcgcggcggcgss

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 165 (29.68%)
Max nb of predicted sites per peak: 12
(chr1:21960428-21962446)
Mean nb of predicted sites per peak: 3.07

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 19 positions_7nt_m4

k-mer sig=13.45; evalue=3.5e-14

sscTccgccccgcccgcgcggccs

SGGCCGCGCGGGCGGGGCGGAGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sscTccgccccgcccgcgcggccs

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 271 (48.74%)
Max nb of predicted sites per peak: 13
(chr6:124662498-124663618)
Mean nb of predicted sites per peak: 2.59

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Motif 20 positions_7nt_m5

k-mer sig=24.65; evalue=2.2e-25

sscgccgccgcgcgcggcggcgss

SSCGCCGCCGCGCGCGGCGGCGSS

[ k-mers: statistics assemblies ]
[ matrix: tab_format transfac_format ]

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sscgccgccgcgcgcggcggcgss

Total matches= 0

No match

Predicted sites on test peaks

Distribution of sites

Nb of predicted sites per peak

Nb peaks with at least one predicted site: 181 (32.55%)
Max nb of predicted sites per peak: 31
(chr16:67619789-67621476)
Mean nb of predicted sites per peak: 4.27

[ view in genome browser :

]
[ sites: text BED (UCSC track) ]
[ distribution: text ]
[ sites per peak: text ]
[ enrichment: text graph ]

Word significance table
Word comparisons		[tab] [html] [heatmap]
Comparisons between discovered motifs
Discovered motifs versus discovered motifs		[ Discovered motif(s): tf ] [ table: html txt ] [ alignments (logo): html text ] [ clustering: html ] [ graph: gml (for CytoScape) ]
Discovered motifs versus transcription factor databases
Motifs versus JASPAR2024_CORE_vertebrates_non-redundant database		[ table: html txt ] [ alignments (logo): html text ] [ graph: gml (for CytoScape) ]

Log files
Parameters and files		[txt] [html]
Time log		[time table] [time log] [html]

RSAT - peak-motifs result

Analysis: sertoli_comun (26/05/2025 19:46)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cscgggccgccgcgcggcggccgs

Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor scgcccgCcgccccgcgCggcgcs

Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssccggcggCgcggcccgccgCsk

Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sgrggcgggGcgGcGgagcggcgs

PATZ1 MA1961.2 D 11 0.4583 0.892 0.409 NA NA

Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssgcggcgggccgccgckgcgcss

ZNF93 MA1721.2 R 14 0.5833 0.704 0.411 NA NA

Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sgscgscgccGCcgCgGCggcggc

ZNF93 MA1721.2 D 14 0.5833 0.747 0.436 NA NA

Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssggcgccgccgcgcggcggcgss

Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sscTccgccccgcccgcgcggccs

Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sscgccgccgcgcgcggcggcgss

Total matches= 0

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

RSAT - peak-motifs result

Analysis: sertoli_comun (26/05/2025 19:46)

Command

Sequence composition

Discovered motifs (by algorithm)

Discovered motifs (with motif comparison)

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor cscgggccgccgcgcggcggccgs Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor scgcccgCcgccccgcgCggcgcs Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor ssccggcggCgcggcccgccgCsk Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor sgrggcgggGcgGcGgagcggcgs PATZ1 MA1961.2 D 11 0.4583 0.892 0.409 NA NA Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor ssgcggcgggccgccgckgcgcss ZNF93 MA1721.2 R 14 0.5833 0.704 0.411 NA NA Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor sgscgscgccGCcgCgGCggcggc ZNF93 MA1721.2 D 14 0.5833 0.747 0.436 NA NA Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor ssggcgccgccgcgcggcggcgss Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor sscTccgccccgcccgcgcggccs Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match columns aligned correlation cor sscgccgccgcgcgcggcggcgss Total matches= 0

Motif locations (sites)

Motif comparisons

Logs and parameter files

Publications

Results

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor cscgggccgccgcgcggcggccgs

Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor scgcccgCcgccccgcgCggcgcs

Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssccggcggCgcggcccgccgCsk

Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sgrggcgggGcgGcGgagcggcgs

PATZ1 MA1961.2 D 11 0.4583 0.892 0.409 NA NA

Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssgcggcgggccgccgckgcgcss

ZNF93 MA1721.2 R 14 0.5833 0.704 0.411 NA NA

Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sgscgscgccGCcgCgGCggcggc

ZNF93 MA1721.2 D 14 0.5833 0.747 0.436 NA NA

Total matches= 1

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor ssggcgccgccgcgcggcggcgss

Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sscTccgccccgcccgcgcggccs

Total matches= 0

JASPAR2024_CORE_vertebrates_non-redundant

name id strand Nb overlap % Pearson Normalized aligned col. motif aligned col. match

columns aligned correlation cor sscgccgccgcgcgcggcggcgss

Total matches= 0